CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ZNF470 (CAeditome ID:388566)

Gene summary for ZNF470

check button Gene summary
Gene informationGene symbol

ZNF470

Gene ID

388566

Gene namezinc finger protein 470
SynonymsCZF-1
Cytomap

19q13.43

Type of geneprotein-coding
Descriptionzinc finger protein 470chondrogenesis zinc finger protein 1
Modification date20210518
UniProtAcc

Q6ECI4

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ZNF470

GO:0005654

Zinc finger protein 470

0000052

ZNF470

GO:0016604

Zinc finger protein 470

0000052


Top

RNA A-to-I events for ZNF470

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000197016.10
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1392036(56572502, +), CAediting_1392037(56579189, +), CAediting_1392038(56579197, +), CAediting_1392039(56579279, +), CAediting_1392040(56579301, +), CAediting_1392041(56579315, +), CAediting_1392042(56579318, +), CAediting_1392043(56580754, +), CAediting_1392044(56585306, +), CAediting_1392045(56585323, +), CAediting_1392046(56585324, +),

Top

RNA editing positional annotations for ZNF470 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1392036chr19_56572502_+ncRNA_intronic
CAediting_1392037chr19_56579189_+ncRNA_intronic
CAediting_1392038chr19_56579197_+ncRNA_intronic
CAediting_1392039chr19_56579279_+ncRNA_intronic
CAediting_1392040chr19_56579301_+ncRNA_intronic
CAediting_1392041chr19_56579315_+ncRNA_intronic
CAediting_1392042chr19_56579318_+ncRNA_intronic
CAediting_1392043chr19_56580754_+ncRNA_intronic
CAediting_1392044chr19_56585306_+ncRNA_intronic
CAediting_1392045chr19_56585323_+ncRNA_intronic
CAediting_1392046chr19_56585324_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1392036chr19_56572502_+SINEAluAluSx
CAediting_1392037chr19_56579189_+SINEAluAluJb
CAediting_1392038chr19_56579197_+SINEAluAluJb
CAediting_1392039chr19_56579279_+SINEAluAluJb
CAediting_1392040chr19_56579301_+SINEAluAluJb
CAediting_1392041chr19_56579315_+SINEAluAluJb
CAediting_1392042chr19_56579318_+SINEAluAluJb
CAediting_1392043chr19_56580754_+LINEL2L2
CAediting_1392044chr19_56585306_+SINEAluAluY
CAediting_1392045chr19_56585323_+SINEAluAluY
CAediting_1392046chr19_56585324_+SINEAluAluY

Top

RNA A-to-I editing events in the alternative splicing sites for ZNF470

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000197016.10.ZNF470.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000197016.10.ZNF470.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF470

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
TGCT.CAediting_1392043.ENSG00000197016.ZNF470.png
Soverview

Top

Protein coding region RNA A-to-I editings for ZNF470

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for ZNF470

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1392043chr19_56580754_+ENSG00000197016.10ENST00000330619hsa-miR-2115-5p56580752565807598mer-1a5658073856580759147.00-12.94
CAediting_1392043chr19_56580754_+ENSG00000197016.10ENST00000391709hsa-miR-2115-5p56580752565807598mer-1a5658073856580759147.00-12.94
CAediting_1392037chr19_56579189_+ENSG00000197016.10ENST00000330619hsa-miR-191356579187565791937mer-m85657916756579194149.00-27.64
CAediting_1392037chr19_56579189_+ENSG00000197016.10ENST00000330619hsa-miR-6849-3p56579182565791887mer-m85657916856579189140.00-18.02
CAediting_1392037chr19_56579189_+ENSG00000197016.10ENST00000391709hsa-miR-191356579187565791937mer-m85657916756579194149.00-27.64
CAediting_1392037chr19_56579189_+ENSG00000197016.10ENST00000391709hsa-miR-6849-3p56579182565791887mer-m85657916856579189140.00-18.02
CAediting_1392038chr19_56579197_+ENSG00000197016.10ENST00000330619hsa-miR-4485-5p56579191565791988mer-1a5657918256579198157.00-26.74
CAediting_1392038chr19_56579197_+ENSG00000197016.10ENST00000391709hsa-miR-4485-5p56579191565791988mer-1a5657918256579198157.00-26.74
CAediting_1392040chr19_56579301_+ENSG00000197016.10ENST00000330619hsa-miR-140-3p56579296565793027mer-m85657928356579303164.00-24.95
CAediting_1392040chr19_56579301_+ENSG00000197016.10ENST00000391709hsa-miR-140-3p56579296565793027mer-m85657928356579303164.00-24.95
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-125a-5p56579311565793177mer-m85657929556579318142.00-17.14
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-125b-5p56579311565793177mer-m85657929556579318148.00-17.80
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-125b-5p56579311565793177mer-m85657929556579318148.00-17.80
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-394356579315565793217mer-m85657930156579322147.00-21.97
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-431356579314565793207mer-m85657930256579321146.00-21.10
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-431956579311565793177mer-m85657930256579318142.00-17.68
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-125a-5p56579311565793177mer-m85657929556579318142.00-17.14
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-125b-5p56579311565793177mer-m85657929556579318148.00-17.80
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-125b-5p56579311565793177mer-m85657929556579318148.00-17.80
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-394356579315565793217mer-m85657930156579322147.00-21.97
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-431356579314565793207mer-m85657930256579321146.00-21.10
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-431956579311565793177mer-m85657930256579318142.00-17.68

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1392041chr19_56579315_+ENSG00000197016.10ENST00000330619hsa-miR-120056579311565793177mer-m85657929756579318141-17.35
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-120056579311565793177mer-m85657929756579318141-17.35
CAediting_1392040chr19_56579301_+ENSG00000197016.10ENST00000330619hsa-miR-316956579300565793067mer-1a5657928456579306141-20.75
CAediting_1392040chr19_56579301_+ENSG00000197016.10ENST00000330619hsa-miR-475956579299565793068mer-1a5657928556579306152-15.01
CAediting_1392039chr19_56579279_+ENSG00000197016.10ENST00000330619hsa-miR-479456579273565792797mer-m85657925856579280143-16.56
CAediting_1392038chr19_56579197_+ENSG00000197016.10ENST00000330619hsa-miR-5001-3p56579192565791987mer-m85657917856579199149-21.23
CAediting_1392039chr19_56579279_+ENSG00000197016.10ENST00000330619hsa-miR-6504-5p56579274565792796mer5657925856579280140-19.95
CAediting_1392039chr19_56579279_+ENSG00000197016.10ENST00000330619hsa-miR-664a-5p56579273565792797mer-m85657925756579280141-14.2
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-6791-3p56579314565793207mer-m85657930156579321150-17.21
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-6829-3p56579314565793207mer-m85657930256579321155-20.58
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000330619hsa-miR-6829-3p56579314565793207mer-m85657931456579334141-22.37
CAediting_1392041chr19_56579315_+ENSG00000197016.10ENST00000330619hsa-miR-6869-5p56579308565793147mer-m85657929256579315148-16.95
CAediting_1392041chr19_56579315_+ENSG00000197016.10ENST00000391709hsa-miR-120056579311565793177mer-m85657929756579318141-17.35
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-120056579311565793177mer-m85657929756579318141-17.35
CAediting_1392040chr19_56579301_+ENSG00000197016.10ENST00000391709hsa-miR-316956579300565793067mer-1a5657928456579306141-20.75
CAediting_1392040chr19_56579301_+ENSG00000197016.10ENST00000391709hsa-miR-475956579299565793068mer-1a5657928556579306152-15.01
CAediting_1392039chr19_56579279_+ENSG00000197016.10ENST00000391709hsa-miR-479456579273565792797mer-m85657925856579280143-16.56
CAediting_1392038chr19_56579197_+ENSG00000197016.10ENST00000391709hsa-miR-5001-3p56579192565791987mer-m85657917856579199149-21.23
CAediting_1392039chr19_56579279_+ENSG00000197016.10ENST00000391709hsa-miR-6504-5p56579274565792796mer5657925856579280140-19.95
CAediting_1392039chr19_56579279_+ENSG00000197016.10ENST00000391709hsa-miR-664a-5p56579273565792797mer-m85657925756579280141-14.2
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-6791-3p56579314565793207mer-m85657930156579321150-17.21
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-6829-3p56579314565793207mer-m85657930256579321155-20.58
CAediting_1392042chr19_56579318_+ENSG00000197016.10ENST00000391709hsa-miR-6829-3p56579314565793207mer-m85657931456579334141-22.37
CAediting_1392041chr19_56579315_+ENSG00000197016.10ENST00000391709hsa-miR-6869-5p56579308565793147mer-m85657929256579315148-16.95

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000197016.10ENST00000330619hsa-miR-624-3p56579245565792517mer-m85657923256579252152-13.11
CAediting_688080chr9_63819626_+ENSG00000197016.10ENST00000330619hsa-miR-4477b56581949565819568mer-1a5658193656581956149-12.34
CAediting_688081chr9_63819627_+ENSG00000197016.10ENST00000330619hsa-miR-4477b56579801565798088mer-1a5657978756579808152-10.54
CAediting_688081chr9_63819627_+ENSG00000197016.10ENST00000330619hsa-miR-4477b56581871565818788mer-1a5658185956581878157-16.02
CAediting_980496chr14_31014685_-ENSG00000197016.10ENST00000391709hsa-miR-624-3p56579245565792517mer-m85657923256579252152-13.11
CAediting_688080chr9_63819626_+ENSG00000197016.10ENST00000391709hsa-miR-4477b56581949565819568mer-1a5658193656581956149-12.34
CAediting_688081chr9_63819627_+ENSG00000197016.10ENST00000391709hsa-miR-4477b56579801565798088mer-1a5657978756579808152-10.54
CAediting_688081chr9_63819627_+ENSG00000197016.10ENST00000391709hsa-miR-4477b56581871565818788mer-1a5658185956581878157-16.02
CAediting_1229415chr17_67471547_+ENSG00000197016.10ENST00000330619hsa-miR-548aa56580477565804837mer-m85658046356580484155-12.35
CAediting_1399425chr20_1392958_-ENSG00000197016.10ENST00000330619hsa-miR-6869-5p56581957565819637mer-m85658194356581964145-19.23
CAediting_573001chr7_92204086_-ENSG00000197016.10ENST00000330619hsa-miR-1285-5p56580192565801998mer-1a5658018156580199150-20.86
CAediting_86358chr1_109598906_+ENSG00000197016.10ENST00000601902hsa-miR-197-5p56588543565885497mer-m85658852756588550153-29.07
CAediting_414656chr5_72878640_+ENSG00000197016.10ENST00000601902hsa-miR-4804-3p56588834565888418mer-1a5658882156588841143-13.08
CAediting_1229415chr17_67471547_+ENSG00000197016.10ENST00000391709hsa-miR-548aa56580477565804837mer-m85658046356580484155-12.35
CAediting_1399425chr20_1392958_-ENSG00000197016.10ENST00000391709hsa-miR-6869-5p56581957565819637mer-m85658194356581964145-19.23
CAediting_573001chr7_92204086_-ENSG00000197016.10ENST00000391709hsa-miR-1285-5p56580192565801998mer-1a5658018156580199150-20.86

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000197016.10ENST00000330619hsa-miR-195-3p56580241565802466mer5658022656580247144-9.79
CAediting_393chr1_1167164_+ENSG00000197016.10ENST00000330619hsa-miR-200b-3p56581334565813407mer-m85658132056581341152-10.27
CAediting_1306324chr19_13836464_-ENSG00000197016.10ENST00000330619hsa-miR-27a-3p56580189565801957mer-m85658017456580196153-19.38
CAediting_1306323chr19_13836462_-ENSG00000197016.10ENST00000330619hsa-miR-27a-3p56580189565801957mer-m85658017456580196153-19.38
CAediting_1306324chr19_13836464_-ENSG00000197016.10ENST00000330619hsa-miR-27a-3p56582860565828667mer-m85658284756582867140-12.18
CAediting_1306323chr19_13836462_-ENSG00000197016.10ENST00000330619hsa-miR-27a-3p56582860565828667mer-m85658284756582867140-12.18
CAediting_1229413chr17_67471544_+ENSG00000197016.10ENST00000330619hsa-miR-548aa56581921565819277mer-m85658190456581928140-9.43
CAediting_1229415chr17_67471547_+ENSG00000197016.10ENST00000330619hsa-miR-548aa56581921565819277mer-m85658190456581928140-9.43
CAediting_117844chr1_162342605_+ENSG00000197016.10ENST00000330619hsa-miR-556-3p56581510565815178mer-1a5658149556581517147-8.72
CAediting_1351755chr19_40282625_-ENSG00000197016.10ENST00000330619hsa-miR-64156582383565823908mer-1a5658236456582390143-12.13
CAediting_1399425chr20_1392958_-ENSG00000197016.10ENST00000330619hsa-miR-6869-5p56579308565793147mer-m85657929256579315148-16.95
CAediting_1160181chr17_7017644_-ENSG00000197016.10ENST00000391709hsa-miR-195-3p56580241565802466mer5658022656580247144-9.79
CAediting_393chr1_1167164_+ENSG00000197016.10ENST00000391709hsa-miR-200b-3p56581334565813407mer-m85658132056581341152-10.27
CAediting_1306324chr19_13836464_-ENSG00000197016.10ENST00000391709hsa-miR-27a-3p56580189565801957mer-m85658017456580196153-19.38
CAediting_1306323chr19_13836462_-ENSG00000197016.10ENST00000391709hsa-miR-27a-3p56580189565801957mer-m85658017456580196153-19.38
CAediting_1306324chr19_13836464_-ENSG00000197016.10ENST00000391709hsa-miR-27a-3p56582860565828667mer-m85658284756582867140-12.18
CAediting_1306323chr19_13836462_-ENSG00000197016.10ENST00000391709hsa-miR-27a-3p56582860565828667mer-m85658284756582867140-12.18
CAediting_1229413chr17_67471544_+ENSG00000197016.10ENST00000391709hsa-miR-548aa56581921565819277mer-m85658190456581928140-9.43
CAediting_1229415chr17_67471547_+ENSG00000197016.10ENST00000391709hsa-miR-548aa56581921565819277mer-m85658190456581928140-9.43
CAediting_117844chr1_162342605_+ENSG00000197016.10ENST00000391709hsa-miR-556-3p56581510565815178mer-1a5658149556581517147-8.72
CAediting_1351755chr19_40282625_-ENSG00000197016.10ENST00000391709hsa-miR-64156582383565823908mer-1a5658236456582390143-12.13
CAediting_1399425chr20_1392958_-ENSG00000197016.10ENST00000391709hsa-miR-6869-5p56579308565793147mer-m85657929256579315148-16.95

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZNF470

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for ZNF470

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_1392043chr19_56580754_+1.19353741135963e-060.267173740271758....
BRCACAediting_1392043chr19_56580754_+1.91541439723496e-160.401286191792473....
LUADCAediting_1392043chr19_56580754_+0.0004168086414692570.394793949414482....
GBMCAediting_1392043chr19_56580754_+4.23629931023511e-060.414015168759168....
PRADCAediting_1392043chr19_56580754_+6.44216504337129e-100.437728089629943....
THCACAediting_1392043chr19_56580754_+1.55389961305287e-060.25858204975465....
KIRCCAediting_1392043chr19_56580754_+0.03548307855591310.145203880963653....
SKCMCAediting_1392043chr19_56580754_+0.0001403465841758050.45822635048032....
TGCTCAediting_1392043chr19_56580754_+7.67387485864526e-150.684628342341343....

Top

Relation with cancer stages for ZNF470

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for ZNF470

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for ZNF470

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for ZNF470

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource