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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: KIFC1 (CAeditome ID:3833) |
Gene summary for KIFC1 |
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Gene information | Gene symbol | KIFC1 | Gene ID | 3833 |
Gene name | kinesin family member C1 | |
Synonyms | HSET|KNSL2 | |
Cytomap | 6p21.32 | |
Type of gene | protein-coding | |
Description | kinesin-like protein KIFC1kinesin-like 2kinesin-like protein 2kinesin-related protein HSET | |
Modification date | 20210524 | |
UniProtAcc | Q9BW19 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for KIFC1 |
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CAediting_469845(33398557, +), CAediting_469846(33398563, +), CAediting_469847(33398564, +), CAediting_469848(33398565, +), CAediting_469849(33398576, +), CAediting_469850(33398603, +), CAediting_469851(33398649, +), CAediting_469852(33398651, +), CAediting_469853(33398688, +), CAediting_469854(33398727, +), CAediting_469855(33399116, +), CAediting_469856(33399163, +), CAediting_469857(33399268, +), CAediting_469858(33399307, +), CAediting_469859(33399310, +), CAediting_469860(33399314, +), CAediting_469861(33400045, +), CAediting_469862(33401912, +), CAediting_469863(33402802, +), CAediting_469864(33408728, +), CAediting_469865(33408756, +), CAediting_469866(33408769, +), CAediting_469867(33408918, +), |
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RNA editing positional annotations for KIFC1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_469845 | chr6_33398557_+ | intronic |
CAediting_469846 | chr6_33398563_+ | intronic |
CAediting_469847 | chr6_33398564_+ | intronic |
CAediting_469848 | chr6_33398565_+ | intronic |
CAediting_469849 | chr6_33398576_+ | intronic |
CAediting_469850 | chr6_33398603_+ | intronic |
CAediting_469851 | chr6_33398649_+ | intronic |
CAediting_469852 | chr6_33398651_+ | intronic |
CAediting_469853 | chr6_33398688_+ | intronic |
CAediting_469854 | chr6_33398727_+ | intronic |
CAediting_469855 | chr6_33399116_+ | intronic |
CAediting_469856 | chr6_33399163_+ | intronic |
CAediting_469857 | chr6_33399268_+ | intronic |
CAediting_469858 | chr6_33399307_+ | intronic |
CAediting_469859 | chr6_33399310_+ | intronic |
CAediting_469860 | chr6_33399314_+ | intronic |
CAediting_469861 | chr6_33400045_+ | intronic |
CAediting_469862 | chr6_33401912_+ | ncRNA_intronic |
CAediting_469863 | chr6_33402802_+ | ncRNA_intronic |
CAediting_469864 | chr6_33408728_+ | intronic |
CAediting_469865 | chr6_33408756_+ | intronic |
CAediting_469866 | chr6_33408769_+ | intronic |
CAediting_469867 | chr6_33408918_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_469845 | chr6_33398557_+ | SINE | Alu | AluSx1 |
CAediting_469846 | chr6_33398563_+ | SINE | Alu | AluSx1 |
CAediting_469847 | chr6_33398564_+ | SINE | Alu | AluSx1 |
CAediting_469848 | chr6_33398565_+ | SINE | Alu | AluSx1 |
CAediting_469849 | chr6_33398576_+ | SINE | Alu | AluSx1 |
CAediting_469850 | chr6_33398603_+ | SINE | Alu | AluSx1 |
CAediting_469851 | chr6_33398649_+ | SINE | Alu | AluSx1 |
CAediting_469852 | chr6_33398651_+ | SINE | Alu | AluSx1 |
CAediting_469853 | chr6_33398688_+ | SINE | Alu | AluSx1 |
CAediting_469854 | chr6_33398727_+ | SINE | Alu | AluSx1 |
CAediting_469855 | chr6_33399116_+ | SINE | Alu | AluSx |
CAediting_469856 | chr6_33399163_+ | SINE | Alu | AluSx |
CAediting_469857 | chr6_33399268_+ | SINE | Alu | AluSx |
CAediting_469858 | chr6_33399307_+ | SINE | Alu | AluSx |
CAediting_469859 | chr6_33399310_+ | SINE | Alu | AluSx |
CAediting_469860 | chr6_33399314_+ | SINE | Alu | AluSx |
CAediting_469862 | chr6_33401912_+ | SINE | Alu | AluY |
CAediting_469863 | chr6_33402802_+ | SINE | Alu | AluSp |
CAediting_469864 | chr6_33408728_+ | SINE | Alu | FLAM_C |
CAediting_469865 | chr6_33408756_+ | SINE | Alu | FLAM_C |
CAediting_469866 | chr6_33408769_+ | SINE | Alu | FLAM_C |
CAediting_469867 | chr6_33408918_+ | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for KIFC1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for KIFC1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for KIFC1 |
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The effects of the RNA editing to the miRNA binding sites for KIFC1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for KIFC1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for KIFC1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BLCA | CAediting_469864 | chr6_33408728_+ | 0.00105118584569016 | 0.35749673065188 | . | . | . | . |
BRCA | CAediting_469864 | chr6_33408728_+ | 6.88431737966333e-13 | 0.40143789814866 | . | . | . | . |
LUAD | CAediting_469864 | chr6_33408728_+ | 0.043999333681509 | 0.260983526857721 | . | . | . | . |
LUSC | CAediting_469864 | chr6_33408728_+ | 0.00242024591682535 | 0.319386775785704 | . | . | . | . |
UCEC | CAediting_469864 | chr6_33408728_+ | 6.84409848360643e-06 | 0.561117334664049 | . | . | . | . |
ESCA | CAediting_469864 | chr6_33408728_+ | 0.0417037925589343 | 0.253370554148409 | . | . | . | . |
TGCT | CAediting_469864 | chr6_33408728_+ | 0.00144711154233329 | 0.430430578597999 | . | . | . | . |
BRCA | CAediting_469865 | chr6_33408756_+ | 1.56994478370562e-06 | 0.293222869195313 | . | . | . | . |
CESC | CAediting_469865 | chr6_33408756_+ | 0.0269947694737811 | 0.157988059274788 | . | . | . | . |
LUSC | CAediting_469865 | chr6_33408756_+ | 0.00852769104975759 | 0.230708962754641 | . | . | . | . |
OV | CAediting_469865 | chr6_33408756_+ | 0.00238799995918381 | 0.188669651878282 | . | . | . | . |
SKCM | CAediting_469865 | chr6_33408756_+ | 0.0021754775271456 | 0.248412940056319 | . | . | . | . |
SARC | CAediting_469865 | chr6_33408756_+ | 0.0397173372886033 | 0.242988644884253 | . | . | . | . |
TGCT | CAediting_469865 | chr6_33408756_+ | 5.10982759014064e-05 | 0.426992548349623 | . | . | . | . |
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Relation with cancer stages for KIFC1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BLCA | pathologic_stage | CAediting_469865 | chr6_33408756_+ | 0.0419164843812021 | 0.195226803922554 |
ESCA | clinical_stage | CAediting_469865 | chr6_33408756_+ | 0.00109303956179275 | -0.503228922369817 |
ESCA | pathologic_stage | CAediting_469864 | chr6_33408728_+ | 0.0443940497276255 | 0.258355843663509 |
LUAD | pathologic_stage | CAediting_469864 | chr6_33408728_+ | 0.0323554819505776 | 0.276673921689746 |
OV | clinical_stage | CAediting_469864 | chr6_33408728_+ | 0.00830958253998879 | 0.206082226837982 |
TGCT | pathologic_stage | CAediting_469865 | chr6_33408756_+ | 0.0437085124999251 | -0.302093868670697 |
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Relation with survival for KIFC1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for KIFC1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KIFC1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
KIFC1 | C2239176 | Liver carcinoma | 1 | CTD_human |