CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: KCNMA1 (CAeditome ID:3778)

Gene summary for KCNMA1

check button Gene summary
Gene informationGene symbol

KCNMA1

Gene ID

3778

Gene namepotassium calcium-activated channel subfamily M alpha 1
SynonymsBKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1
Cytomap

10q22.3

Type of geneprotein-coding
Descriptioncalcium-activated potassium channel subunit alpha-1uncharacterized protein LOC3778BK channel alpha subunitBKCA alpha subunitbig potassium channel alpha subunitcalcium-activated potassium channel, subfamily M subunit alpha-1k(VCA)alphamaxi-K channel
Modification date20210518
UniProtAcc

Q12791

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
KCNMA1

GO:0003779

Calcium-activated potassium channel subunit alpha-1

15703204

KCNMA1

GO:0005249

Calcium-activated potassium channel subunit alpha-1

12388065

KCNMA1

GO:0005249

Calcium-activated potassium channel subunit alpha-1

7877450

KCNMA1

GO:0015269

Calcium-activated potassium channel subunit alpha-1

11245614

KCNMA1

GO:0015269

Calcium-activated potassium channel subunit alpha-1

17706472

KCNMA1

GO:0015269

Calcium-activated potassium channel subunit alpha-1

18458941

KCNMA1

GO:0015269

Calcium-activated potassium channel subunit alpha-1

7573516

KCNMA1

GO:0015269

Calcium-activated potassium channel subunit alpha-1

7877450

KCNMA1

GO:0060072

Calcium-activated potassium channel subunit alpha-1

7993625

KCNMA1

GO:0001666

Calcium-activated potassium channel subunit alpha-1

15528406

KCNMA1

GO:0006813

Calcium-activated potassium channel subunit alpha-1

11245614

KCNMA1

GO:0006813

Calcium-activated potassium channel subunit alpha-1

12388065

KCNMA1

GO:0006813

Calcium-activated potassium channel subunit alpha-1

17706472

KCNMA1

GO:0006813

Calcium-activated potassium channel subunit alpha-1

18458941

KCNMA1

GO:0006813

Calcium-activated potassium channel subunit alpha-1

7573516

KCNMA1

GO:0006813

Calcium-activated potassium channel subunit alpha-1

7877450

KCNMA1

GO:0006970

Calcium-activated potassium channel subunit alpha-1

10840032

KCNMA1

GO:0006970

Calcium-activated potassium channel subunit alpha-1

12388065

KCNMA1

GO:0030007

Calcium-activated potassium channel subunit alpha-1

11245614

KCNMA1

GO:0034465

Calcium-activated potassium channel subunit alpha-1

15528406

KCNMA1

GO:0042391

Calcium-activated potassium channel subunit alpha-1

7877450

KCNMA1

GO:0042391

Calcium-activated potassium channel subunit alpha-1

7993625

KCNMA1

GO:0045794

Calcium-activated potassium channel subunit alpha-1

12388065

KCNMA1

GO:0051592

Calcium-activated potassium channel subunit alpha-1

12388065

KCNMA1

GO:0051592

Calcium-activated potassium channel subunit alpha-1

18458941

KCNMA1

GO:0060073

Calcium-activated potassium channel subunit alpha-1

11641143

KCNMA1

GO:0060083

Calcium-activated potassium channel subunit alpha-1

11641143

KCNMA1

GO:0005901

Calcium-activated potassium channel subunit alpha-1

15703204

KCNMA1

GO:0016021

Calcium-activated potassium channel subunit alpha-1

7573516

KCNMA1

GO:0016021

Calcium-activated potassium channel subunit alpha-1

7877450

KCNMA1

GO:0016324

Calcium-activated potassium channel subunit alpha-1

10840032

KCNMA1

GO:0008076

Calcium-activated potassium channel subunit alpha-1

7573516

KCNMA1

GO:0008076

Calcium-activated potassium channel subunit alpha-1

7877450


Top

RNA A-to-I events for KCNMA1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000156113.19
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_765544(76983664, -), CAediting_765545(76983675, -), CAediting_765546(76984268, -), CAediting_765547(76984270, -), CAediting_765548(76984275, -), CAediting_765549(76984323, -), CAediting_765550(77040015, -), CAediting_765551(77040079, -), CAediting_765552(77040099, -), CAediting_765553(77082096, -), CAediting_765554(77082150, -), CAediting_765555(77082153, -), CAediting_765556(77082166, -), CAediting_765557(77082256, -), CAediting_765558(77082299, -), CAediting_765559(77151218, -), CAediting_765560(77151235, -), CAediting_765561(77151237, -), CAediting_765562(77151319, -), CAediting_765563(77167938, -), CAediting_765564(77169468, -), CAediting_765565(77169557, -), CAediting_765566(77169593, -), CAediting_765567(77169652, -), CAediting_765568(77169943, -), CAediting_765569(77169947, -), CAediting_765570(77177517, -), CAediting_765571(77178462, -), CAediting_765572(77178472, -), CAediting_765573(77230100, -), CAediting_765574(77230120, -), CAediting_765575(77230125, -), CAediting_765576(77230131, -), CAediting_765577(77232071, -), CAediting_765578(77232098, -), CAediting_765579(77232103, -), CAediting_765580(77232122, -), CAediting_765581(77232123, -), CAediting_765582(77232125, -), CAediting_765583(77232183, -), CAediting_765584(77232186, -), CAediting_765585(77257033, -), CAediting_765586(77265999, -), CAediting_765587(77270607, -), CAediting_765588(77333283, -), CAediting_765589(77346480, -), CAediting_765590(77347069, -), CAediting_765591(77347070, -), CAediting_765592(77382699, -), CAediting_765593(77383799, -), CAediting_765594(77383805, -), CAediting_765595(77383821, -), CAediting_765596(77383824, -), CAediting_765597(77383831, -), CAediting_765598(77383844, -), CAediting_765599(77387640, -), CAediting_765600(77387647, -), CAediting_765601(77387664, -), CAediting_765602(77387720, -), CAediting_765603(77387811, -), CAediting_765604(77387812, -), CAediting_765605(77387837, -), CAediting_765606(77387864, -), CAediting_765607(77387891, -), CAediting_765608(77387899, -), CAediting_765609(77394981, -), CAediting_765610(77398757, -), CAediting_765611(77398766, -), CAediting_765612(77398768, -), CAediting_765613(77398769, -), CAediting_765614(77438105, -), CAediting_765615(77438150, -), CAediting_765616(77443720, -), CAediting_765617(77443724, -), CAediting_765618(77443735, -), CAediting_765619(77443736, -), CAediting_765620(77443763, -), CAediting_765621(77468146, -), CAediting_765622(77489305, -), CAediting_765623(77489487, -), CAediting_765624(77503087, -), CAediting_765625(77504712, -), CAediting_765626(77505325, -), CAediting_765627(77508252, -), CAediting_765628(77508290, -), CAediting_765629(77508299, -), CAediting_765630(77508313, -), CAediting_765631(77508373, -), CAediting_765632(77508378, -), CAediting_765633(77508380, -), CAediting_765634(77508401, -), CAediting_765635(77508402, -), CAediting_765636(77508431, -), CAediting_765637(77509188, -), CAediting_765638(77509217, -), CAediting_765639(77509256, -), CAediting_765640(77509257, -), CAediting_765641(77509279, -), CAediting_765642(77509298, -), CAediting_765643(77509312, -), CAediting_765644(77509322, -), CAediting_765645(77509376, -), CAediting_765646(77509576, -), CAediting_765647(77509598, -), CAediting_765648(77509653, -), CAediting_765649(77509657, -), CAediting_765650(77509659, -), CAediting_765651(77509948, -), CAediting_765652(77509955, -), CAediting_765653(77509956, -), CAediting_765654(77510242, -), CAediting_765655(77510252, -), CAediting_765656(77510263, -), CAediting_765657(77510280, -), CAediting_765658(77551105, -), CAediting_765659(77556313, -), CAediting_765660(77556339, -), CAediting_765661(77556342, -), CAediting_765662(77556357, -), CAediting_765663(77556377, -), CAediting_765664(77556383, -), CAediting_765665(77557745, -), CAediting_765666(77557765, -), CAediting_765667(77557787, -), CAediting_765668(77557788, -), CAediting_765669(77557794, -), CAediting_765670(77557814, -), CAediting_765671(77557826, -), CAediting_765672(77557827, -), CAediting_765673(77557828, -), CAediting_765674(77557829, -), CAediting_765675(77557832, -), CAediting_765676(77557843, -), CAediting_765677(77557844, -), CAediting_765678(77557863, -), CAediting_765679(77557869, -), CAediting_765680(77570862, -), CAediting_765681(77570869, -), CAediting_765682(77572720, -), CAediting_765683(77572749, -), CAediting_765684(77573890, -), CAediting_765685(77573905, -), CAediting_765686(77573940, -), CAediting_765687(77573943, -), CAediting_765688(77573946, -), CAediting_765689(77573969, -), CAediting_765690(77574000, -), CAediting_765691(77574029, -), CAediting_765692(77574039, -), CAediting_765693(77574054, -), CAediting_765694(77577179, -), CAediting_765695(77577185, -), CAediting_765696(77577211, -), CAediting_765697(77580192, -), CAediting_765698(77581387, -), CAediting_765699(77595089, -), CAediting_765700(77595101, -), CAediting_765701(77595161, -), CAediting_765702(77606488, -), CAediting_765703(77606494, -), CAediting_765704(77606501, -), CAediting_765705(77606502, -), CAediting_765706(77606510, -), CAediting_765707(77606527, -), CAediting_765708(77606579, -), CAediting_765709(77608240, -), CAediting_765710(77608356, -), CAediting_765711(77608459, -), CAediting_765712(77623672, -), CAediting_765713(77637540, -), CAediting_765714(77638372, -),

Top

RNA editing positional annotations for KCNMA1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000286627.8c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000286628.11c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000372440.4c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000372443.4c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000404771.6c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000457953.4c.A25Gp.S9GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000480683.1c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000481070.1c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000618048.1c.A103Gp.S35GDBN
CAediting_765713chr10_77637540_-nonsynonymous SNVENST00000626620.1c.A103Gp.S35GDBN

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_765544chr10_76983664_-ncRNA_intronic
CAediting_765545chr10_76983675_-ncRNA_intronic
CAediting_765546chr10_76984268_-ncRNA_intronic
CAediting_765547chr10_76984270_-ncRNA_intronic
CAediting_765548chr10_76984275_-ncRNA_intronic
CAediting_765549chr10_76984323_-ncRNA_intronic
CAediting_765550chr10_77040015_-intronic
CAediting_765551chr10_77040079_-intronic
CAediting_765552chr10_77040099_-intronic
CAediting_765553chr10_77082096_-ncRNA_intronic
CAediting_765554chr10_77082150_-ncRNA_intronic
CAediting_765555chr10_77082153_-ncRNA_intronic
CAediting_765556chr10_77082166_-ncRNA_intronic
CAediting_765557chr10_77082256_-ncRNA_intronic
CAediting_765558chr10_77082299_-ncRNA_intronic
CAediting_765559chr10_77151218_-intronic
CAediting_765560chr10_77151235_-intronic
CAediting_765561chr10_77151237_-intronic
CAediting_765562chr10_77151319_-intronic
CAediting_765563chr10_77167938_-intronic
CAediting_765564chr10_77169468_-intronic
CAediting_765565chr10_77169557_-intronic
CAediting_765566chr10_77169593_-intronic
CAediting_765567chr10_77169652_-intronic
CAediting_765568chr10_77169943_-intronic
CAediting_765569chr10_77169947_-intronic
CAediting_765570chr10_77177517_-intronic
CAediting_765571chr10_77178462_-intronic
CAediting_765572chr10_77178472_-intronic
CAediting_765573chr10_77230100_-intronic
CAediting_765574chr10_77230120_-intronic
CAediting_765575chr10_77230125_-intronic
CAediting_765576chr10_77230131_-intronic
CAediting_765577chr10_77232071_-intronic
CAediting_765578chr10_77232098_-intronic
CAediting_765579chr10_77232103_-intronic
CAediting_765580chr10_77232122_-intronic
CAediting_765581chr10_77232123_-intronic
CAediting_765582chr10_77232125_-intronic
CAediting_765583chr10_77232183_-intronic
CAediting_765584chr10_77232186_-intronic
CAediting_765585chr10_77257033_-intronic
CAediting_765586chr10_77265999_-intronic
CAediting_765587chr10_77270607_-intronic
CAediting_765588chr10_77333283_-intronic
CAediting_765589chr10_77346480_-intronic
CAediting_765590chr10_77347069_-intronic
CAediting_765591chr10_77347070_-intronic
CAediting_765592chr10_77382699_-intronic
CAediting_765593chr10_77383799_-intronic
CAediting_765594chr10_77383805_-intronic
CAediting_765595chr10_77383821_-intronic
CAediting_765596chr10_77383824_-intronic
CAediting_765597chr10_77383831_-intronic
CAediting_765598chr10_77383844_-intronic
CAediting_765599chr10_77387640_-intronic
CAediting_765600chr10_77387647_-intronic
CAediting_765601chr10_77387664_-intronic
CAediting_765602chr10_77387720_-intronic
CAediting_765603chr10_77387811_-intronic
CAediting_765604chr10_77387812_-intronic
CAediting_765605chr10_77387837_-intronic
CAediting_765606chr10_77387864_-intronic
CAediting_765607chr10_77387891_-intronic
CAediting_765608chr10_77387899_-intronic
CAediting_765609chr10_77394981_-intronic
CAediting_765610chr10_77398757_-intronic
CAediting_765611chr10_77398766_-intronic
CAediting_765612chr10_77398768_-intronic
CAediting_765613chr10_77398769_-intronic
CAediting_765614chr10_77438105_-intronic
CAediting_765615chr10_77438150_-intronic
CAediting_765616chr10_77443720_-intronic
CAediting_765617chr10_77443724_-intronic
CAediting_765618chr10_77443735_-intronic
CAediting_765619chr10_77443736_-intronic
CAediting_765620chr10_77443763_-intronic
CAediting_765621chr10_77468146_-intronic
CAediting_765622chr10_77489305_-intronic
CAediting_765623chr10_77489487_-intronic
CAediting_765624chr10_77503087_-intronic
CAediting_765625chr10_77504712_-intronic
CAediting_765626chr10_77505325_-intronic
CAediting_765627chr10_77508252_-intronic
CAediting_765628chr10_77508290_-intronic
CAediting_765629chr10_77508299_-intronic
CAediting_765630chr10_77508313_-intronic
CAediting_765631chr10_77508373_-intronic
CAediting_765632chr10_77508378_-intronic
CAediting_765633chr10_77508380_-intronic
CAediting_765634chr10_77508401_-intronic
CAediting_765635chr10_77508402_-intronic
CAediting_765636chr10_77508431_-intronic
CAediting_765637chr10_77509188_-intronic
CAediting_765638chr10_77509217_-intronic
CAediting_765639chr10_77509256_-intronic
CAediting_765640chr10_77509257_-intronic
CAediting_765641chr10_77509279_-intronic
CAediting_765642chr10_77509298_-intronic
CAediting_765643chr10_77509312_-intronic
CAediting_765644chr10_77509322_-intronic
CAediting_765645chr10_77509376_-intronic
CAediting_765646chr10_77509576_-intronic
CAediting_765647chr10_77509598_-intronic
CAediting_765648chr10_77509653_-intronic
CAediting_765649chr10_77509657_-intronic
CAediting_765650chr10_77509659_-intronic
CAediting_765651chr10_77509948_-intronic
CAediting_765652chr10_77509955_-intronic
CAediting_765653chr10_77509956_-intronic
CAediting_765654chr10_77510242_-intronic
CAediting_765655chr10_77510252_-intronic
CAediting_765656chr10_77510263_-intronic
CAediting_765657chr10_77510280_-intronic
CAediting_765658chr10_77551105_-intronic
CAediting_765659chr10_77556313_-intronic
CAediting_765660chr10_77556339_-intronic
CAediting_765661chr10_77556342_-intronic
CAediting_765662chr10_77556357_-intronic
CAediting_765663chr10_77556377_-intronic
CAediting_765664chr10_77556383_-intronic
CAediting_765665chr10_77557745_-intronic
CAediting_765666chr10_77557765_-intronic
CAediting_765667chr10_77557787_-intronic
CAediting_765668chr10_77557788_-intronic
CAediting_765669chr10_77557794_-intronic
CAediting_765670chr10_77557814_-intronic
CAediting_765671chr10_77557826_-intronic
CAediting_765672chr10_77557827_-intronic
CAediting_765673chr10_77557828_-intronic
CAediting_765674chr10_77557829_-intronic
CAediting_765675chr10_77557832_-intronic
CAediting_765676chr10_77557843_-intronic
CAediting_765677chr10_77557844_-intronic
CAediting_765678chr10_77557863_-intronic
CAediting_765679chr10_77557869_-intronic
CAediting_765680chr10_77570862_-intronic
CAediting_765681chr10_77570869_-intronic
CAediting_765682chr10_77572720_-intronic
CAediting_765683chr10_77572749_-intronic
CAediting_765684chr10_77573890_-intronic
CAediting_765685chr10_77573905_-intronic
CAediting_765686chr10_77573940_-intronic
CAediting_765687chr10_77573943_-intronic
CAediting_765688chr10_77573946_-intronic
CAediting_765689chr10_77573969_-intronic
CAediting_765690chr10_77574000_-intronic
CAediting_765691chr10_77574029_-intronic
CAediting_765692chr10_77574039_-intronic
CAediting_765693chr10_77574054_-intronic
CAediting_765694chr10_77577179_-intronic
CAediting_765695chr10_77577185_-intronic
CAediting_765696chr10_77577211_-intronic
CAediting_765697chr10_77580192_-intronic
CAediting_765698chr10_77581387_-intronic
CAediting_765699chr10_77595089_-intronic
CAediting_765700chr10_77595101_-intronic
CAediting_765701chr10_77595161_-intronic
CAediting_765702chr10_77606488_-intronic
CAediting_765703chr10_77606494_-intronic
CAediting_765704chr10_77606501_-intronic
CAediting_765705chr10_77606502_-intronic
CAediting_765706chr10_77606510_-intronic
CAediting_765707chr10_77606527_-intronic
CAediting_765708chr10_77606579_-intronic
CAediting_765709chr10_77608240_-intronic
CAediting_765710chr10_77608356_-intronic
CAediting_765711chr10_77608459_-intronic
CAediting_765712chr10_77623672_-intronic
CAediting_765713chr10_77637540_-exonic
CAediting_765714chr10_77638372_-UTR5

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_765544chr10_76983664_-SINEAluAluSz6
CAediting_765545chr10_76983675_-SINEAluAluSz6
CAediting_765546chr10_76984268_-SINEAluAluSx1
CAediting_765547chr10_76984270_-SINEAluAluSx1
CAediting_765548chr10_76984275_-SINEAluAluSx1
CAediting_765549chr10_76984323_-SINEAluAluSx1
CAediting_765550chr10_77040015_-SINEAluAluJr
CAediting_765551chr10_77040079_-SINEAluAluJr
CAediting_765552chr10_77040099_-SINEAluAluJr
CAediting_765553chr10_77082096_-SINEAluAluSg
CAediting_765554chr10_77082150_-SINEAluAluSg
CAediting_765555chr10_77082153_-SINEAluAluSg
CAediting_765556chr10_77082166_-SINEAluAluSg
CAediting_765557chr10_77082256_-SINEAluAluSg
CAediting_765558chr10_77082299_-SINEAluAluSg
CAediting_765559chr10_77151218_-SINEAluAluSc
CAediting_765560chr10_77151235_-SINEAluAluSc
CAediting_765561chr10_77151237_-SINEAluAluSc
CAediting_765562chr10_77151319_-SINEAluAluSc
CAediting_765563chr10_77167938_-SINEAluAluJb
CAediting_765564chr10_77169468_-SINEAluAluJr
CAediting_765565chr10_77169557_-SINEAluAluJr
CAediting_765566chr10_77169593_-SINEAluAluJr
CAediting_765567chr10_77169652_-SINEAluAluJr
CAediting_765568chr10_77169943_-SINEAluAluSx1
CAediting_765569chr10_77169947_-SINEAluAluSx1
CAediting_765570chr10_77177517_-Simple_repeatSimple_repeat(TTTCT)n
CAediting_765571chr10_77178462_-SINEAluAluSq
CAediting_765572chr10_77178472_-SINEAluAluSq
CAediting_765573chr10_77230100_-LINEL1L1MB5
CAediting_765574chr10_77230120_-LINEL1L1MB5
CAediting_765575chr10_77230125_-LINEL1L1MB5
CAediting_765576chr10_77230131_-LINEL1L1MB5
CAediting_765577chr10_77232071_-LINEL1L1MB8
CAediting_765578chr10_77232098_-LINEL1L1MB8
CAediting_765579chr10_77232103_-LINEL1L1MB8
CAediting_765580chr10_77232122_-LINEL1L1MB8
CAediting_765581chr10_77232123_-LINEL1L1MB8
CAediting_765582chr10_77232125_-LINEL1L1MB8
CAediting_765583chr10_77232183_-LINEL1L1MB8
CAediting_765584chr10_77232186_-LINEL1L1MB8
CAediting_765585chr10_77257033_-SINEAluAluJo
CAediting_765586chr10_77265999_-SINEAluAluSq
CAediting_765587chr10_77270607_-SINEAluAluSx3
CAediting_765588chr10_77333283_-SINEAluFLAM_C
CAediting_765590chr10_77347069_-SINEMIRMIRb
CAediting_765591chr10_77347070_-SINEMIRMIRb
CAediting_765592chr10_77382699_-SINEAluAluSq2
CAediting_765593chr10_77383799_-SINEAluAluJo
CAediting_765594chr10_77383805_-SINEAluAluJo
CAediting_765595chr10_77383821_-SINEAluAluJo
CAediting_765596chr10_77383824_-SINEAluAluJo
CAediting_765597chr10_77383831_-SINEAluAluJo
CAediting_765598chr10_77383844_-SINEAluAluJo
CAediting_765599chr10_77387640_-SINEAluAluSx1
CAediting_765600chr10_77387647_-SINEAluAluSx1
CAediting_765601chr10_77387664_-SINEAluAluSx1
CAediting_765602chr10_77387720_-SINEAluAluSx1
CAediting_765603chr10_77387811_-SINEAluAluSx1
CAediting_765604chr10_77387812_-SINEAluAluSx1
CAediting_765605chr10_77387837_-SINEAluAluSx1
CAediting_765606chr10_77387864_-SINEAluAluSx1
CAediting_765607chr10_77387891_-SINEAluAluSx1
CAediting_765608chr10_77387899_-SINEAluAluSx1
CAediting_765609chr10_77394981_-DNAhAT-CharlieMER58B
CAediting_765610chr10_77398757_-DNAhAT-CharlieMER58A
CAediting_765611chr10_77398766_-DNAhAT-CharlieMER58A
CAediting_765612chr10_77398768_-DNAhAT-CharlieMER58A
CAediting_765613chr10_77398769_-DNAhAT-CharlieMER58A
CAediting_765614chr10_77438105_-SINEAluFRAM
CAediting_765615chr10_77438150_-SINEAluFRAM
CAediting_765616chr10_77443720_-SINEMIRMIRb
CAediting_765617chr10_77443724_-SINEMIRMIRb
CAediting_765621chr10_77468146_-SINEAluAluSx4
CAediting_765623chr10_77489487_-SINEAluAluSq2
CAediting_765624chr10_77503087_-SINEAluFLAM_A
CAediting_765625chr10_77504712_-SINEAluAluJo
CAediting_765626chr10_77505325_-LINEL2L2b
CAediting_765627chr10_77508252_-SINEAluAluJb
CAediting_765628chr10_77508290_-SINEAluAluJb
CAediting_765629chr10_77508299_-SINEAluAluJb
CAediting_765630chr10_77508313_-SINEAluAluJb
CAediting_765631chr10_77508373_-SINEAluAluJb
CAediting_765632chr10_77508378_-SINEAluAluJb
CAediting_765633chr10_77508380_-SINEAluAluJb
CAediting_765634chr10_77508401_-SINEAluAluJb
CAediting_765635chr10_77508402_-SINEAluAluJb
CAediting_765636chr10_77508431_-SINEAluAluJb
CAediting_765637chr10_77509188_-SINEAluAluSx
CAediting_765638chr10_77509217_-SINEAluAluSx
CAediting_765639chr10_77509256_-SINEAluAluSx
CAediting_765640chr10_77509257_-SINEAluAluSx
CAediting_765641chr10_77509279_-SINEAluAluSx
CAediting_765642chr10_77509298_-SINEAluAluSx
CAediting_765643chr10_77509312_-SINEAluAluSx
CAediting_765644chr10_77509322_-SINEAluAluSx
CAediting_765645chr10_77509376_-SINEAluAluSx
CAediting_765646chr10_77509576_-LINEL1L1MB3
CAediting_765647chr10_77509598_-LINEL1L1MB3
CAediting_765648chr10_77509653_-LINEL1L1MB3
CAediting_765649chr10_77509657_-LINEL1L1MB3
CAediting_765650chr10_77509659_-LINEL1L1MB3
CAediting_765654chr10_77510242_-SINEMIRMIRb
CAediting_765658chr10_77551105_-SINEAluFLAM_A
CAediting_765659chr10_77556313_-SINEAluAluSz
CAediting_765660chr10_77556339_-SINEAluAluSz
CAediting_765661chr10_77556342_-SINEAluAluSz
CAediting_765662chr10_77556357_-SINEAluAluSz
CAediting_765663chr10_77556377_-SINEAluAluSz
CAediting_765664chr10_77556383_-SINEAluAluSz
CAediting_765665chr10_77557745_-SINEAluAluSq2
CAediting_765666chr10_77557765_-SINEAluAluSq2
CAediting_765667chr10_77557787_-SINEAluAluSq2
CAediting_765668chr10_77557788_-SINEAluAluSq2
CAediting_765669chr10_77557794_-SINEAluAluSq2
CAediting_765670chr10_77557814_-SINEAluAluSq2
CAediting_765671chr10_77557826_-SINEAluAluSq2
CAediting_765672chr10_77557827_-SINEAluAluSq2
CAediting_765673chr10_77557828_-SINEAluAluSq2
CAediting_765674chr10_77557829_-SINEAluAluSq2
CAediting_765675chr10_77557832_-SINEAluAluSq2
CAediting_765676chr10_77557843_-SINEAluAluSq2
CAediting_765677chr10_77557844_-SINEAluAluSq2
CAediting_765678chr10_77557863_-SINEAluAluSq2
CAediting_765679chr10_77557869_-SINEAluAluSq2
CAediting_765680chr10_77570862_-SINEAluAluJb
CAediting_765681chr10_77570869_-SINEAluAluJb
CAediting_765682chr10_77572720_-SINEAluAluJb
CAediting_765683chr10_77572749_-SINEAluAluJb
CAediting_765684chr10_77573890_-SINEAluAluSz
CAediting_765685chr10_77573905_-SINEAluAluSz
CAediting_765686chr10_77573940_-SINEAluAluSz
CAediting_765687chr10_77573943_-SINEAluAluSz
CAediting_765688chr10_77573946_-SINEAluAluSz
CAediting_765689chr10_77573969_-SINEAluAluSz
CAediting_765690chr10_77574000_-SINEAluAluSz
CAediting_765691chr10_77574029_-SINEAluAluSz
CAediting_765692chr10_77574039_-SINEAluAluSz
CAediting_765693chr10_77574054_-SINEAluAluSz
CAediting_765694chr10_77577179_-SINEAluAluSg7
CAediting_765695chr10_77577185_-SINEAluAluSg7
CAediting_765696chr10_77577211_-SINEAluAluSg7
CAediting_765697chr10_77580192_-SINEAluAluY
CAediting_765698chr10_77581387_-SINEAluAluY
CAediting_765699chr10_77595089_-SINEAluAluSx1
CAediting_765700chr10_77595101_-SINEAluAluSx1
CAediting_765701chr10_77595161_-SINEAluAluSx1
CAediting_765702chr10_77606488_-SINEAluAluJr
CAediting_765703chr10_77606494_-SINEAluAluJr
CAediting_765704chr10_77606501_-SINEAluAluJr
CAediting_765705chr10_77606502_-SINEAluAluJr
CAediting_765706chr10_77606510_-SINEAluAluJr
CAediting_765707chr10_77606527_-SINEAluAluJr
CAediting_765708chr10_77606579_-SINEAluAluJr
CAediting_765709chr10_77608240_-SINEAluAluJb
CAediting_765710chr10_77608356_-SINEAluAluJb
CAediting_765711chr10_77608459_-SINEAluAluJb
CAediting_765712chr10_77623672_-SINEAluAluSz

Top

RNA A-to-I editing events in the alternative splicing sites for KCNMA1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000156113.19.KCNMA1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000156113.19.KCNMA1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for KCNMA1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
LGG.CAediting_765713.ENSG00000156113.KCNMA1.png
Soverview

Top

Protein coding region RNA A-to-I editings for KCNMA1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


Top

The effects of the RNA editing to the miRNA binding sites for KCNMA1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000156113.19ENST00000604624hsa-miR-200b-3p76871717768717237mer-m87687171676871738149-10.59
CAediting_688080chr9_63819626_+ENSG00000156113.19ENST00000604624hsa-miR-4477b76871356768713627mer-m87687135576871377155-16.48
CAediting_1229413chr17_67471544_+ENSG00000156113.19ENST00000604624hsa-miR-548aa76875828768758347mer-m87687582776875852147-10.25
CAediting_1229413chr17_67471544_+ENSG00000156113.19ENST00000604624hsa-miR-548aa76869649768696568mer-1a7686964976869674154-12.84
CAediting_1229414chr17_67471546_+ENSG00000156113.19ENST00000604624hsa-miR-548aa76874206768742127mer-m87687420576874230149-14.43
CAediting_1229415chr17_67471547_+ENSG00000156113.19ENST00000604624hsa-miR-548aa76870552768705587mer-m87687055176870575147-13.03
CAediting_1351755chr19_40282625_-ENSG00000156113.19ENST00000604624hsa-miR-64176876449768764568mer-1a7687644976876473154-12.2
CAediting_1351755chr19_40282625_-ENSG00000156113.19ENST00000604624hsa-miR-64176875519768755246mer7687551876875541153-24.37
CAediting_1368054chr19_46709310_-ENSG00000156113.19ENST00000604624hsa-miR-320e76877163768771697mer-m87687716276877180148-17.32
CAediting_1399425chr20_1392958_-ENSG00000156113.19ENST00000604624hsa-miR-6869-5p76869726768697338mer-1a7686972676869747140-19.88
CAediting_228905chr2_188297554_+ENSG00000156113.19ENST00000604624hsa-miR-561-3p76874476768744827mer-m87687447576874497156-6.61
CAediting_396018chr5_1062918_-ENSG00000156113.19ENST00000604624hsa-miR-463576871355768713617mer-m87687135476871374157-19
CAediting_442554chr5_154685830_+ENSG00000156113.19ENST00000604624hsa-miR-130376874010768740167mer-m87687400976874030158-18.46
CAediting_524911chr7_5495852_-ENSG00000156113.19ENST00000604624hsa-miR-589-3p76874238768742447mer-m87687423776874260154-21.42
CAediting_524911chr7_5495852_-ENSG00000156113.19ENST00000604624hsa-miR-589-3p76869740768697478mer-1a7686974076869763141-19.59
CAediting_524911chr7_5495852_-ENSG00000156113.19ENST00000604624hsa-miR-589-3p76876932768769387mer-m87687693176876953156-19.77
CAediting_1229414chr17_67471546_+ENSG00000156113.19ENST00000434208hsa-miR-548aa76884316768843227mer-m87688431576884336160-16.92
CAediting_86358chr1_109598906_+ENSG00000156113.19ENST00000354353hsa-miR-197-5p76885431768854377mer-m87688543076885452145-21.61
CAediting_117844chr1_162342605_+ENSG00000156113.19ENST00000354353hsa-miR-556-3p76885944768859507mer-m87688594376885967151-12.71
CAediting_396018chr5_1062918_-ENSG00000156113.19ENST00000354353hsa-miR-463576885517768855237mer-m87688551676885536140-11.45
CAediting_86358chr1_109598906_+ENSG00000156113.19ENST00000406533hsa-miR-197-5p76885431768854377mer-m87688543076885452145-21.61
CAediting_117844chr1_162342605_+ENSG00000156113.19ENST00000406533hsa-miR-556-3p76885944768859507mer-m87688594376885967151-12.71
CAediting_396018chr5_1062918_-ENSG00000156113.19ENST00000406533hsa-miR-463576885517768855237mer-m87688551676885536140-11.45

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573001chr7_92204086_-ENSG00000156113.19ENST00000604624hsa-miR-1285-5p76872404768724107mer-m87687240376872424153-13.43
CAediting_846604chr11_93733708_-ENSG00000156113.19ENST00000604624hsa-miR-1304-3p76871294768713007mer-m87687129376871314147-17.81
CAediting_1160181chr17_7017644_-ENSG00000156113.19ENST00000604624hsa-miR-195-3p76877575768775817mer-m87687757476877595140-7.85
CAediting_86358chr1_109598906_+ENSG00000156113.19ENST00000604624hsa-miR-197-5p76869727768697348mer-1a7686972776869750141-17.71
CAediting_688080chr9_63819626_+ENSG00000156113.19ENST00000604624hsa-miR-4477b76877382768773887mer-m87687738176877402147-11.31
CAediting_688081chr9_63819627_+ENSG00000156113.19ENST00000604624hsa-miR-4477b76877382768773887mer-m87687738176877402147-11.31
CAediting_1054808chr15_66496985_-ENSG00000156113.19ENST00000604624hsa-miR-451276871165768711717mer-m87687116476871184149-28.41
CAediting_396018chr5_1062918_-ENSG00000156113.19ENST00000604624hsa-miR-463576869926768699327mer-m87686992576869946151-16.01
CAediting_1524209chrX_134546392_-ENSG00000156113.19ENST00000604624hsa-miR-503-5p76870432768704376mer7687043176870452141-21.76
CAediting_228905chr2_188297554_+ENSG00000156113.19ENST00000604624hsa-miR-561-3p76875425768754317mer-m87687542476875444151-9.11
CAediting_228905chr2_188297554_+ENSG00000156113.19ENST00000604624hsa-miR-561-3p76874831768748377mer-m87687483076874851140-5.63
CAediting_524911chr7_5495852_-ENSG00000156113.19ENST00000604624hsa-miR-589-3p76875262768752687mer-m87687526176875284150-12.7
CAediting_524911chr7_5495852_-ENSG00000156113.19ENST00000604624hsa-miR-589-3p76870520768705267mer-m87687051976870540143-15.84
CAediting_1399425chr20_1392958_-ENSG00000156113.19ENST00000604624hsa-miR-6869-5p76875885768758917mer-m87687588476875905140-12.38
CAediting_468389chr6_31355314_-ENSG00000156113.19ENST00000604624hsa-miR-6891-5p76873452768734587mer-1a7687345276873469143-22.38
CAediting_1399425chr20_1392958_-ENSG00000156113.19ENST00000434208hsa-miR-6869-5p76884450768844578mer-1a7688445076884470142-13.87
CAediting_393chr1_1167164_+ENSG00000156113.19ENST00000354353hsa-miR-200b-3p76885397768854026mer7688538476885404150-9.63
CAediting_393chr1_1167164_+ENSG00000156113.19ENST00000354353hsa-miR-200b-3p76885385768853917mer-m87688538476885404150-9.63
CAediting_228905chr2_188297554_+ENSG00000156113.19ENST00000354353hsa-miR-561-3p76884911768849177mer-m87688491076884931140-5.83
CAediting_748296chr10_51299626_+ENSG00000156113.19ENST00000354353hsa-miR-605-3p76886360768863667mer-m87688635976886383154-14.56
CAediting_393chr1_1167164_+ENSG00000156113.19ENST00000406533hsa-miR-200b-3p76885397768854026mer7688538476885404150-9.63
CAediting_393chr1_1167164_+ENSG00000156113.19ENST00000406533hsa-miR-200b-3p76885385768853917mer-m87688538476885404150-9.63
CAediting_228905chr2_188297554_+ENSG00000156113.19ENST00000406533hsa-miR-561-3p76884911768849177mer-m87688491076884931140-5.83
CAediting_748296chr10_51299626_+ENSG00000156113.19ENST00000406533hsa-miR-605-3p76886360768863667mer-m87688635976886383154-14.56

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for KCNMA1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for KCNMA1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

Top

Relation with cancer stages for KCNMA1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for KCNMA1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for KCNMA1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
KCNMA1Q12791DB00356ChlorzoxazoneCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved
KCNMA1Q12791DB00436BendroflumethiazideCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved
KCNMA1Q12791DB01119DiazoxideCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved
KCNMA1Q12791DB09089TrimebutineCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved
KCNMA1Q12791DB04209DequaliniumCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved|investigational
KCNMA1Q12791DB00721ProcaineCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved|investigational|vet_approved
KCNMA1Q12791DB01110MiconazoleCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved|investigational|vet_approved
KCNMA1Q12791DB00774HydroflumethiazideCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved|investigational|withdrawn
KCNMA1Q12791DB00999HydrochlorothiazideCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved|vet_approved
KCNMA1Q12791DB01159HalothaneCalcium-activated potassium channel subunit alpha-1 SmallMoleculeDrugapproved|vet_approved

Top

RelatedDiseases for KCNMA1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
KCNMA1C1836173Generalized Epilepsy and Paroxysmal Dyskinesia3CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
KCNMA1C0004352Autistic Disorder1CTD_human
KCNMA1C0005944Metabolic Bone Disorder1CTD_human
KCNMA1C0007134Renal Cell Carcinoma1CTD_human
KCNMA1C0018273Growth Disorders1CTD_human
KCNMA1C0019284Diaphragmatic Hernia1CTD_human
KCNMA1C0020542Pulmonary Hypertension1CTD_human
KCNMA1C0028754Obesity1CTD_human
KCNMA1C0028756Obesity, Morbid1CTD_human
KCNMA1C0029453Osteopenia1CTD_human
KCNMA1C0038220Status Epilepticus1CTD_human
KCNMA1C0043094Weight Gain1CTD_human
KCNMA1C0270823Petit mal status1CTD_human
KCNMA1C0279702Conventional (Clear Cell) Renal Cell Carcinoma1CTD_human
KCNMA1C0311335Grand Mal Status Epilepticus1CTD_human
KCNMA1C0393734Complex Partial Status Epilepticus1CTD_human
KCNMA1C0410916Neonatal Death1CTD_human
KCNMA1C0701826Perinatal death1CTD_human
KCNMA1C0751522Status Epilepticus, Subclinical1CTD_human
KCNMA1C0751523Non-Convulsive Status Epilepticus1CTD_human
KCNMA1C0751524Simple Partial Status Epilepticus1CTD_human
KCNMA1C1266042Chromophobe Renal Cell Carcinoma1CTD_human
KCNMA1C1266043Sarcomatoid Renal Cell Carcinoma1CTD_human
KCNMA1C1266044Collecting Duct Carcinoma of the Kidney1CTD_human
KCNMA1C1306837Papillary Renal Cell Carcinoma1CTD_human
KCNMA1C4539985CEREBELLAR ATROPHY, DEVELOPMENTAL DELAY, AND SEIZURES1GENOMICS_ENGLAND