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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TRIM73 (CAeditome ID:375593) |
Gene summary for TRIM73 |
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Gene information | Gene symbol | TRIM73 | Gene ID | 375593 |
Gene name | tripartite motif containing 73 | |
Synonyms | TRIM50B | |
Cytomap | 7q11.23 | |
Type of gene | protein-coding | |
Description | tripartite motif-containing protein 73tripartite motif-containing protein 50B | |
Modification date | 20210518 | |
UniProtAcc | Q86UV7 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TRIM73 | GO:0005829 | Tripartite motif-containing protein 73 | 0000052 |
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RNA A-to-I events for TRIM73 |
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CAediting_563626(75396231, +), CAediting_563627(75396233, +), CAediting_563628(75396280, +), CAediting_563629(75396305, +), CAediting_563630(75396306, +), CAediting_563631(75396308, +), CAediting_563632(75396335, +), CAediting_563633(75396345, +), CAediting_563634(75396347, +), CAediting_563635(75396641, +), CAediting_563636(75409133, +), |
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RNA editing positional annotations for TRIM73 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_563626 | chr7_75396231_+ | ncRNA_intronic |
CAediting_563627 | chr7_75396233_+ | ncRNA_intronic |
CAediting_563628 | chr7_75396280_+ | ncRNA_intronic |
CAediting_563629 | chr7_75396305_+ | ncRNA_intronic |
CAediting_563630 | chr7_75396306_+ | ncRNA_intronic |
CAediting_563631 | chr7_75396308_+ | ncRNA_intronic |
CAediting_563632 | chr7_75396335_+ | ncRNA_intronic |
CAediting_563633 | chr7_75396345_+ | ncRNA_intronic |
CAediting_563634 | chr7_75396347_+ | ncRNA_intronic |
CAediting_563635 | chr7_75396641_+ | ncRNA_intronic |
CAediting_563636 | chr7_75409133_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_563626 | chr7_75396231_+ | SINE | Alu | AluJr |
CAediting_563627 | chr7_75396233_+ | SINE | Alu | AluJr |
CAediting_563628 | chr7_75396280_+ | SINE | Alu | AluJr |
CAediting_563629 | chr7_75396305_+ | SINE | Alu | AluJr |
CAediting_563630 | chr7_75396306_+ | SINE | Alu | AluJr |
CAediting_563631 | chr7_75396308_+ | SINE | Alu | AluJr |
CAediting_563632 | chr7_75396335_+ | SINE | Alu | AluJr |
CAediting_563633 | chr7_75396345_+ | SINE | Alu | AluJr |
CAediting_563634 | chr7_75396347_+ | SINE | Alu | AluJr |
CAediting_563635 | chr7_75396641_+ | SINE | Alu | AluSq |
CAediting_563636 | chr7_75409133_+ | SINE | Alu | AluJr |
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RNA A-to-I editing events in the alternative splicing sites for TRIM73 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRIM73 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TRIM73 |
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The effects of the RNA editing to the miRNA binding sites for TRIM73 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000178809.10 | ENST00000430211 | hsa-miR-548aa | 75410775 | 75410782 | 8mer-1a | 75410759 | 75410782 | 145 | -10.86 |
CAediting_468389 | chr6_31355314_- | ENSG00000178809.10 | ENST00000430211 | hsa-miR-6891-5p | 75410685 | 75410692 | 8mer-1a | 75410671 | 75410692 | 143 | -24.58 |
CAediting_1524209 | chrX_134546392_- | ENSG00000178809.10 | ENST00000430211 | hsa-miR-503-5p | 75410787 | 75410793 | 7mer-m8 | 75410772 | 75410794 | 150 | -26.05 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000178809.10 | ENST00000450434 | hsa-miR-320e | 75405282 | 75405288 | 7mer-1a | 75405271 | 75405288 | 144 | -14.65 |
CAediting_396018 | chr5_1062918_- | ENSG00000178809.10 | ENST00000450434 | hsa-miR-4635 | 75405368 | 75405374 | 7mer-m8 | 75405355 | 75405375 | 152 | -17.08 |
CAediting_1368054 | chr19_46709310_- | ENSG00000178809.10 | ENST00000323819 | hsa-miR-320e | 75405282 | 75405288 | 7mer-1a | 75405271 | 75405288 | 144 | -14.65 |
CAediting_396018 | chr5_1062918_- | ENSG00000178809.10 | ENST00000323819 | hsa-miR-4635 | 75405368 | 75405374 | 7mer-m8 | 75405355 | 75405375 | 152 | -17.08 |
CAediting_1368054 | chr19_46709310_- | ENSG00000178809.10 | ENST00000447409 | hsa-miR-320e | 75405282 | 75405288 | 7mer-1a | 75405271 | 75405288 | 144 | -14.65 |
CAediting_396018 | chr5_1062918_- | ENSG00000178809.10 | ENST00000447409 | hsa-miR-4635 | 75405368 | 75405374 | 7mer-m8 | 75405355 | 75405375 | 152 | -17.08 |
CAediting_1368054 | chr19_46709310_- | ENSG00000178809.10 | ENST00000437796 | hsa-miR-320e | 75405282 | 75405288 | 7mer-1a | 75405271 | 75405288 | 144 | -14.65 |
CAediting_396018 | chr5_1062918_- | ENSG00000178809.10 | ENST00000437796 | hsa-miR-4635 | 75405368 | 75405374 | 7mer-m8 | 75405355 | 75405375 | 152 | -17.08 |
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The effects of the RNA editing to the stability of the RNA structures for TRIM73 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TRIM73 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TRIM73 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TRIM73 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TRIM73 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRIM73 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |