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Editing gene: RBM43 (CAeditome ID:375287)

Gene summary for RBM43

Gene summary

Gene information	Gene symbol	RBM43
	Gene ID	375287
	Gene name	RNA binding motif protein 43
	Synonyms	C2orf38
	Cytomap	2q23.3
	Type of gene	protein-coding
	Description	RNA-binding protein 43
	Modification date	20210518
	UniProtAcc	Q6ZSC3
	Context	- 32632220(RNA-binding motif protein 43 (RBM43) suppresses hepatocellular carcinoma progression through modulation of cyclin B1 expression)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for RBM43

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000184898.6

RNA A-to-I editing events in Cancer.

CAediting_217905(151249384, -), CAediting_217906(151249390, -), CAediting_217907(151249392, -), CAediting_217908(151249393, -), CAediting_217909(151249405, -), CAediting_217910(151249407, -), CAediting_217911(151249411, -), CAediting_217912(151249413, -), CAediting_217913(151249445, -), CAediting_217914(151249446, -), CAediting_217915(151249450, -), CAediting_217916(151249454, -), CAediting_217917(151249467, -), CAediting_217918(151249474, -), CAediting_217919(151249475, -), CAediting_217920(151249483, -), CAediting_217921(151249486, -), CAediting_217922(151249489, -), CAediting_217923(151249493, -), CAediting_217924(151249499, -), CAediting_217925(151249501, -), CAediting_217926(151249513, -), CAediting_217927(151249523, -), CAediting_217928(151249541, -), CAediting_217929(151249549, -), CAediting_217930(151249552, -), CAediting_217931(151249553, -), CAediting_217932(151249554, -), CAediting_217933(151249555, -), CAediting_217934(151249556, -), CAediting_217935(151249558, -), CAediting_217936(151249560, -), CAediting_217937(151249562, -), CAediting_217938(151249563, -), CAediting_217939(151249567, -), CAediting_217940(151249578, -), CAediting_217941(151249580, -), CAediting_217942(151249581, -), CAediting_217943(151249588, -), CAediting_217944(151249589, -), CAediting_217945(151249612, -), CAediting_217946(151249618, -), CAediting_217947(151249620, -), CAediting_217948(151249639, -), CAediting_217949(151249647, -), CAediting_217950(151249650, -), CAediting_217951(151249655, -), CAediting_217952(151249656, -), CAediting_217953(151249662, -), CAediting_217954(151249664, -), CAediting_217955(151249668, -), CAediting_217956(151250331, -), CAediting_217957(151250340, -), CAediting_217958(151250352, -), CAediting_217959(151250353, -), CAediting_217960(151250354, -), CAediting_217961(151250407, -), CAediting_217962(151250415, -), CAediting_217963(151250429, -), CAediting_217964(151250432, -), CAediting_217965(151250440, -), CAediting_217966(151250475, -), CAediting_217967(151250477, -), CAediting_217968(151250498, -), CAediting_217969(151250499, -), CAediting_217970(151250515, -), CAediting_217971(151250517, -), CAediting_217972(151250530, -), CAediting_217973(151250542, -), CAediting_217974(151250552, -), CAediting_217975(151250561, -),

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RNA editing positional annotations for RBM43 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_217905	chr2_151249384_-	UTR3
CAediting_217906	chr2_151249390_-	UTR3
CAediting_217907	chr2_151249392_-	UTR3
CAediting_217908	chr2_151249393_-	UTR3
CAediting_217909	chr2_151249405_-	UTR3
CAediting_217910	chr2_151249407_-	UTR3
CAediting_217911	chr2_151249411_-	UTR3
CAediting_217912	chr2_151249413_-	UTR3
CAediting_217913	chr2_151249445_-	UTR3
CAediting_217914	chr2_151249446_-	UTR3
CAediting_217915	chr2_151249450_-	UTR3
CAediting_217916	chr2_151249454_-	UTR3
CAediting_217917	chr2_151249467_-	UTR3
CAediting_217918	chr2_151249474_-	UTR3
CAediting_217919	chr2_151249475_-	UTR3
CAediting_217920	chr2_151249483_-	UTR3
CAediting_217921	chr2_151249486_-	UTR3
CAediting_217922	chr2_151249489_-	UTR3
CAediting_217923	chr2_151249493_-	UTR3
CAediting_217924	chr2_151249499_-	UTR3
CAediting_217925	chr2_151249501_-	UTR3
CAediting_217926	chr2_151249513_-	UTR3
CAediting_217927	chr2_151249523_-	UTR3
CAediting_217928	chr2_151249541_-	UTR3
CAediting_217929	chr2_151249549_-	UTR3
CAediting_217930	chr2_151249552_-	UTR3
CAediting_217931	chr2_151249553_-	UTR3
CAediting_217932	chr2_151249554_-	UTR3
CAediting_217933	chr2_151249555_-	UTR3
CAediting_217934	chr2_151249556_-	UTR3
CAediting_217935	chr2_151249558_-	UTR3
CAediting_217936	chr2_151249560_-	UTR3
CAediting_217937	chr2_151249562_-	UTR3
CAediting_217938	chr2_151249563_-	UTR3
CAediting_217939	chr2_151249567_-	UTR3
CAediting_217940	chr2_151249578_-	UTR3
CAediting_217941	chr2_151249580_-	UTR3
CAediting_217942	chr2_151249581_-	UTR3
CAediting_217943	chr2_151249588_-	UTR3
CAediting_217944	chr2_151249589_-	UTR3
CAediting_217945	chr2_151249612_-	UTR3
CAediting_217946	chr2_151249618_-	UTR3
CAediting_217947	chr2_151249620_-	UTR3
CAediting_217948	chr2_151249639_-	UTR3
CAediting_217949	chr2_151249647_-	UTR3
CAediting_217950	chr2_151249650_-	UTR3
CAediting_217951	chr2_151249655_-	UTR3
CAediting_217952	chr2_151249656_-	UTR3
CAediting_217953	chr2_151249662_-	UTR3
CAediting_217954	chr2_151249664_-	UTR3
CAediting_217955	chr2_151249668_-	UTR3
CAediting_217956	chr2_151250331_-	UTR3
CAediting_217957	chr2_151250340_-	UTR3
CAediting_217958	chr2_151250352_-	UTR3
CAediting_217959	chr2_151250353_-	UTR3
CAediting_217960	chr2_151250354_-	UTR3
CAediting_217961	chr2_151250407_-	UTR3
CAediting_217962	chr2_151250415_-	UTR3
CAediting_217963	chr2_151250429_-	UTR3
CAediting_217964	chr2_151250432_-	UTR3
CAediting_217965	chr2_151250440_-	UTR3
CAediting_217966	chr2_151250475_-	UTR3
CAediting_217967	chr2_151250477_-	UTR3
CAediting_217968	chr2_151250498_-	UTR3
CAediting_217969	chr2_151250499_-	UTR3
CAediting_217970	chr2_151250515_-	UTR3
CAediting_217971	chr2_151250517_-	UTR3
CAediting_217972	chr2_151250530_-	UTR3
CAediting_217973	chr2_151250542_-	UTR3
CAediting_217974	chr2_151250552_-	UTR3
CAediting_217975	chr2_151250561_-	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_217905	chr2_151249384_-	SINE	Alu	AluY
CAediting_217906	chr2_151249390_-	SINE	Alu	AluY
CAediting_217907	chr2_151249392_-	SINE	Alu	AluY
CAediting_217908	chr2_151249393_-	SINE	Alu	AluY
CAediting_217909	chr2_151249405_-	SINE	Alu	AluY
CAediting_217910	chr2_151249407_-	SINE	Alu	AluY
CAediting_217911	chr2_151249411_-	SINE	Alu	AluY
CAediting_217912	chr2_151249413_-	SINE	Alu	AluY
CAediting_217913	chr2_151249445_-	SINE	Alu	AluY
CAediting_217914	chr2_151249446_-	SINE	Alu	AluY
CAediting_217915	chr2_151249450_-	SINE	Alu	AluY
CAediting_217916	chr2_151249454_-	SINE	Alu	AluY
CAediting_217917	chr2_151249467_-	SINE	Alu	AluY
CAediting_217918	chr2_151249474_-	SINE	Alu	AluY
CAediting_217919	chr2_151249475_-	SINE	Alu	AluY
CAediting_217920	chr2_151249483_-	SINE	Alu	AluY
CAediting_217921	chr2_151249486_-	SINE	Alu	AluY
CAediting_217922	chr2_151249489_-	SINE	Alu	AluY
CAediting_217923	chr2_151249493_-	SINE	Alu	AluY
CAediting_217924	chr2_151249499_-	SINE	Alu	AluY
CAediting_217925	chr2_151249501_-	SINE	Alu	AluY
CAediting_217926	chr2_151249513_-	SINE	Alu	AluY
CAediting_217927	chr2_151249523_-	SINE	Alu	AluY
CAediting_217928	chr2_151249541_-	SINE	Alu	AluY
CAediting_217929	chr2_151249549_-	SINE	Alu	AluY
CAediting_217930	chr2_151249552_-	SINE	Alu	AluY
CAediting_217931	chr2_151249553_-	SINE	Alu	AluY
CAediting_217932	chr2_151249554_-	SINE	Alu	AluY
CAediting_217933	chr2_151249555_-	SINE	Alu	AluY
CAediting_217934	chr2_151249556_-	SINE	Alu	AluY
CAediting_217935	chr2_151249558_-	SINE	Alu	AluY
CAediting_217936	chr2_151249560_-	SINE	Alu	AluY
CAediting_217937	chr2_151249562_-	SINE	Alu	AluY
CAediting_217938	chr2_151249563_-	SINE	Alu	AluY
CAediting_217939	chr2_151249567_-	SINE	Alu	AluY
CAediting_217940	chr2_151249578_-	SINE	Alu	AluY
CAediting_217941	chr2_151249580_-	SINE	Alu	AluY
CAediting_217942	chr2_151249581_-	SINE	Alu	AluY
CAediting_217943	chr2_151249588_-	SINE	Alu	AluY
CAediting_217944	chr2_151249589_-	SINE	Alu	AluY
CAediting_217945	chr2_151249612_-	SINE	Alu	AluY
CAediting_217946	chr2_151249618_-	SINE	Alu	AluY
CAediting_217947	chr2_151249620_-	SINE	Alu	AluY
CAediting_217948	chr2_151249639_-	SINE	Alu	AluY
CAediting_217949	chr2_151249647_-	SINE	Alu	AluY
CAediting_217950	chr2_151249650_-	SINE	Alu	AluY
CAediting_217951	chr2_151249655_-	SINE	Alu	AluY
CAediting_217952	chr2_151249656_-	SINE	Alu	AluY
CAediting_217953	chr2_151249662_-	SINE	Alu	AluY
CAediting_217954	chr2_151249664_-	SINE	Alu	AluY
CAediting_217955	chr2_151249668_-	SINE	Alu	AluY
CAediting_217956	chr2_151250331_-	SINE	Alu	AluY
CAediting_217957	chr2_151250340_-	SINE	Alu	AluY
CAediting_217958	chr2_151250352_-	SINE	Alu	AluY
CAediting_217959	chr2_151250353_-	SINE	Alu	AluY
CAediting_217960	chr2_151250354_-	SINE	Alu	AluY
CAediting_217961	chr2_151250407_-	SINE	Alu	AluY
CAediting_217962	chr2_151250415_-	SINE	Alu	AluY
CAediting_217963	chr2_151250429_-	SINE	Alu	AluY
CAediting_217964	chr2_151250432_-	SINE	Alu	AluY
CAediting_217965	chr2_151250440_-	SINE	Alu	AluY
CAediting_217966	chr2_151250475_-	SINE	Alu	AluY
CAediting_217967	chr2_151250477_-	SINE	Alu	AluY
CAediting_217968	chr2_151250498_-	SINE	Alu	AluY
CAediting_217969	chr2_151250499_-	SINE	Alu	AluY
CAediting_217970	chr2_151250515_-	SINE	Alu	AluY
CAediting_217971	chr2_151250517_-	SINE	Alu	AluY
CAediting_217972	chr2_151250530_-	SINE	Alu	AluY
CAediting_217973	chr2_151250542_-	SINE	Alu	AluY
CAediting_217974	chr2_151250552_-	SINE	Alu	AluY
CAediting_217975	chr2_151250561_-	SINE	Alu	AluY

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RNA A-to-I editing events in the alternative splicing sites for RBM43

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000184898.6.RBM43.

Correlation between RNA A-to-I editing and PSI for ENSG00000184898.6.RBM43.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RBM43

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BRCA.CAediting_217914.ENSG00000184898.RBM43.png
Soverview

BRCA.CAediting_217952.ENSG00000184898.RBM43.png
Soverview

KIRC.CAediting_217928.ENSG00000184898.RBM43.png
Soverview

KIRC.CAediting_217952.ENSG00000184898.RBM43.png
Soverview

KIRC.CAediting_217970.ENSG00000184898.RBM43.png
Soverview

OV.CAediting_217944.ENSG00000184898.RBM43.png
Soverview

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Protein coding region RNA A-to-I editings for RBM43

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for RBM43

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_217913	chr2_151249445_-	ENSG00000184898.6	ENST00000331426	hsa-miR-149-5p	151249445	151249451	7mer-m8	151249444	151249469	155.00	-28.43
CAediting_217913	chr2_151249445_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1910-5p	151249440	151249446	7mer-m8	151249439	151249458	157.00	-20.64
CAediting_217913	chr2_151249445_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6838-3p	151249441	151249447	7mer-m8	151249440	151249458	156.00	-21.56
CAediting_217914	chr2_151249446_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4638-5p	151249443	151249450	8mer-1a	151249443	151249462	146.00	-21.99
CAediting_217915	chr2_151249450_-	ENSG00000184898.6	ENST00000331426	hsa-miR-324-3p	151249450	151249456	7mer-m8	151249449	151249468	145.00	-21.90
CAediting_217923	chr2_151249493_-	ENSG00000184898.6	ENST00000331426	hsa-miR-18a-3p	151249488	151249493	6mer	151249487	151249511	140.00	-27.10
CAediting_217923	chr2_151249493_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1913	151249488	151249494	7mer-m8	151249487	151249509	155.00	-29.91
CAediting_217923	chr2_151249493_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4758-3p	151249489	151249495	7mer-1a	151249489	151249511	141.00	-30.19
CAediting_217923	chr2_151249493_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6849-3p	151249493	151249499	7mer-m8	151249492	151249513	158.00	-24.90
CAediting_217951	chr2_151249655_-	ENSG00000184898.6	ENST00000331426	hsa-miR-8052	151249650	151249656	7mer-1a	151249650	151249668	140.00	-23.60
CAediting_217952	chr2_151249656_-	ENSG00000184898.6	ENST00000331426	hsa-miR-513a-5p	151249655	151249661	7mer-m8	151249654	151249671	156.00	-18.52
CAediting_217952	chr2_151249656_-	ENSG00000184898.6	ENST00000331426	hsa-miR-513a-5p	151249655	151249661	7mer-m8	151249654	151249671	156.00	-18.52
CAediting_217952	chr2_151249656_-	ENSG00000184898.6	ENST00000331426	hsa-miR-638	151249650	151249656	7mer-1a	151249650	151249674	147.00	-28.63
CAediting_217911	chr2_151249411_-	ENSG00000184898.6	ENST00000331426	hsa-miR-339-5p	151249410	151249416	7mer-m8	151249409	151249431	163.00	-27.89
CAediting_217911	chr2_151249411_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6726-3p	151249407	151249413	7mer-m8	151249406	151249427	169.00	-33.86
CAediting_217916	chr2_151249454_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6784-3p	151249449	151249454	6mer	151249448	151249470	143.00	-26.64
CAediting_217917	chr2_151249467_-	ENSG00000184898.6	ENST00000331426	hsa-miR-5587-3p	151249467	151249473	7mer-m8	151249466	151249487	142.00	-23.21
CAediting_217917	chr2_151249467_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6840-5p	151249466	151249472	7mer-m8	151249465	151249488	145.00	-23.07
CAediting_217918	chr2_151249474_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4284	151249472	151249478	7mer-m8	151249471	151249488	148.00	-20.34
CAediting_217918	chr2_151249474_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4437	151249471	151249477	7mer-m8	151249470	151249490	145.00	-18.43
CAediting_217920	chr2_151249483_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4639-3p	151249481	151249487	7mer-m8	151249480	151249502	148.00	-23.17
CAediting_217920	chr2_151249483_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6777-3p	151249480	151249486	7mer-m8	151249479	151249498	164.00	-29.74
CAediting_217921	chr2_151249486_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6752-3p	151249486	151249492	7mer-m8	151249485	151249504	147.00	-22.09
CAediting_217921	chr2_151249486_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6801-3p	151249484	151249491	8mer-1a	151249484	151249505	153.00	-27.61
CAediting_217921	chr2_151249486_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6810-3p	151249484	151249491	8mer-1a	151249484	151249511	150.00	-29.20
CAediting_217924	chr2_151249499_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6769a-3p	151249495	151249501	7mer-m8	151249494	151249514	148.00	-22.44
CAediting_217925	chr2_151249501_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6512-3p	151249499	151249505	7mer-m8	151249498	151249519	154.00	-26.32
CAediting_217925	chr2_151249501_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6720-5p	151249499	151249505	7mer-m8	151249498	151249523	156.00	-26.49
CAediting_217925	chr2_151249501_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6849-3p	151249499	151249506	8mer-1a	151249499	151249520	140.00	-16.02
CAediting_217925	chr2_151249501_-	ENSG00000184898.6	ENST00000331426	hsa-miR-766-3p	151249498	151249504	7mer-m8	151249497	151249519	150.00	-22.41
CAediting_217926	chr2_151249513_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3665	151249512	151249518	7mer-m8	151249511	151249528	143.00	-21.93
CAediting_217927	chr2_151249523_-	ENSG00000184898.6	ENST00000331426	hsa-miR-140-3p	151249521	151249527	7mer-m8	151249520	151249540	155.00	-25.24
CAediting_217931	chr2_151249553_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6844	151249552	151249558	7mer-m8	151249551	151249572	155.00	-7.49
CAediting_217933	chr2_151249555_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4742-3p	151249554	151249561	8mer-1a	151249554	151249576	142.00	-9.18
CAediting_217943	chr2_151249588_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3146	151249585	151249591	7mer-m8	151249584	151249604	143.00	-19.32
CAediting_217944	chr2_151249589_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3157-5p	151249588	151249594	7mer-m8	151249587	151249609	163.00	-24.78
CAediting_217946	chr2_151249618_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6790-3p	151249612	151249619	8mer-1a	151249612	151249632	150.00	-23.08
CAediting_217948	chr2_151249639_-	ENSG00000184898.6	ENST00000331426	hsa-miR-10392-3p	151249633	151249640	8mer-1a	151249633	151249657	144.00	-22.69
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-518a-3p	151249643	151249649	7mer-m8	151249642	151249663	145.00	-17.16
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-518a-3p	151249643	151249649	7mer-m8	151249642	151249663	145.00	-17.16
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-518b	151249643	151249649	7mer-m8	151249642	151249662	146.00	-21.80
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-518c-3p	151249643	151249649	7mer-m8	151249642	151249664	146.00	-19.24
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-518d-3p	151249643	151249649	7mer-m8	151249642	151249662	145.00	-17.84
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-518e-3p	151249644	151249650	7mer-m8	151249643	151249664	144.00	-16.77
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-518f-3p	151249643	151249649	7mer-m8	151249642	151249662	145.00	-17.49
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-526a-3p	151249643	151249649	7mer-m8	151249642	151249662	146.00	-17.72
CAediting_217950	chr2_151249650_-	ENSG00000184898.6	ENST00000331426	hsa-miR-371a-3p	151249645	151249651	7mer-m8	151249644	151249670	147.00	-18.06
CAediting_217955	chr2_151249668_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6807-5p	151249664	151249670	7mer-m8	151249663	151249684	140.00	-17.89
CAediting_217956	chr2_151250331_-	ENSG00000184898.6	ENST00000331426	hsa-miR-662	151250330	151250335	6mer	151250329	151250351	153.00	-32.51
CAediting_217956	chr2_151250331_-	ENSG00000184898.6	ENST00000331426	hsa-miR-663b	151250326	151250332	7mer-m8	151250325	151250348	149.00	-28.29
CAediting_217957	chr2_151250340_-	ENSG00000184898.6	ENST00000331426	hsa-miR-106a-3p	151250338	151250343	6mer	151250337	151250358	141.00	-21.13
CAediting_217958	chr2_151250352_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3189-3p	151250351	151250357	7mer-m8	151250350	151250373	153.00	-24.71
CAediting_217958	chr2_151250352_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6813-3p	151250350	151250356	7mer-m8	151250349	151250369	140.00	-12.55
CAediting_217959	chr2_151250353_-	ENSG00000184898.6	ENST00000331426	hsa-miR-326	151250351	151250357	7mer-m8	151250350	151250369	140.00	-15.12
CAediting_217959	chr2_151250353_-	ENSG00000184898.6	ENST00000331426	hsa-miR-330-5p	151250351	151250357	7mer-m8	151250350	151250371	140.00	-21.22
CAediting_217959	chr2_151250353_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4314	151250352	151250358	7mer-m8	151250351	151250368	140.00	-21.17
CAediting_217959	chr2_151250353_-	ENSG00000184898.6	ENST00000331426	hsa-miR-514a-5p	151250350	151250356	7mer-m8	151250349	151250372	146.00	-20.07
CAediting_217959	chr2_151250353_-	ENSG00000184898.6	ENST00000331426	hsa-miR-514a-5p	151250350	151250356	7mer-m8	151250349	151250372	146.00	-20.07
CAediting_217959	chr2_151250353_-	ENSG00000184898.6	ENST00000331426	hsa-miR-514a-5p	151250350	151250356	7mer-m8	151250349	151250372	146.00	-20.07
CAediting_217966	chr2_151250475_-	ENSG00000184898.6	ENST00000331426	hsa-miR-100-5p	151250472	151250478	7mer-m8	151250471	151250491	160.00	-22.54
CAediting_217966	chr2_151250475_-	ENSG00000184898.6	ENST00000331426	hsa-miR-99a-5p	151250472	151250478	7mer-m8	151250471	151250491	160.00	-21.42
CAediting_217966	chr2_151250475_-	ENSG00000184898.6	ENST00000331426	hsa-miR-99b-5p	151250472	151250478	7mer-m8	151250471	151250492	152.00	-26.22
CAediting_217967	chr2_151250477_-	ENSG00000184898.6	ENST00000331426	hsa-miR-17-3p	151250474	151250480	7mer-m8	151250473	151250495	149.00	-21.90
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3929	151250495	151250501	7mer-m8	151250494	151250515	156.00	-18.66
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4478	151250495	151250501	7mer-m8	151250494	151250509	149.00	-25.05
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4649-3p	151250498	151250504	7mer-m8	151250497	151250517	140.00	-14.11
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-485-5p	151250494	151250500	7mer-m8	151250493	151250514	157.00	-20.87
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6884-5p	151250494	151250500	7mer-m8	151250493	151250516	161.00	-26.21
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-7160-5p	151250497	151250503	7mer-m8	151250496	151250515	149.00	-18.69
CAediting_217974	chr2_151250552_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4786-5p	151250548	151250554	7mer-m8	151250547	151250570	154.00	-23.39
CAediting_217908	chr2_151249393_-	ENSG00000184898.6	ENST00000331426	hsa-miR-526b-5p	151249391	151249398	8mer-1a	151249391	151249415	156.00	-19.32
CAediting_217909	chr2_151249405_-	ENSG00000184898.6	ENST00000331426	hsa-miR-2114-3p	151249402	151249408	7mer-m8	151249401	151249421	140.00	-13.32
CAediting_217909	chr2_151249405_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6823-3p	151249402	151249408	7mer-m8	151249401	151249423	152.00	-23.04
CAediting_217932	chr2_151249554_-	ENSG00000184898.6	ENST00000331426	hsa-miR-578	151249552	151249558	7mer-m8	151249551	151249571	148.00	-9.14
CAediting_217932	chr2_151249554_-	ENSG00000184898.6	ENST00000331426	hsa-miR-643	151249553	151249560	8mer-1a	151249553	151249575	147.00	-12.10
CAediting_217935	chr2_151249558_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3680-3p	151249553	151249560	8mer-1a	151249553	151249575	140.00	-14.24
CAediting_217935	chr2_151249558_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3680-3p	151249553	151249560	8mer-1a	151249553	151249575	140.00	-14.24
CAediting_217937	chr2_151249562_-	ENSG00000184898.6	ENST00000331426	hsa-miR-630	151249556	151249563	8mer-1a	151249556	151249576	158.00	-15.14
CAediting_217938	chr2_151249563_-	ENSG00000184898.6	ENST00000331426	hsa-miR-325	151249562	151249569	8mer-1a	151249562	151249584	145.00	-9.91
CAediting_217939	chr2_151249567_-	ENSG00000184898.6	ENST00000331426	hsa-miR-374b-3p	151249562	151249569	8mer-1a	151249562	151249587	154.00	-14.69
CAediting_217939	chr2_151249567_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4756-3p	151249567	151249573	7mer-m8	151249566	151249591	152.00	-18.66
CAediting_217941	chr2_151249580_-	ENSG00000184898.6	ENST00000331426	hsa-miR-182-3p	151249576	151249582	7mer-m8	151249575	151249598	143.00	-12.54
CAediting_217960	chr2_151250354_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6771-5p	151250352	151250359	8mer-1a	151250352	151250373	151.00	-26.02

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_217951	chr2_151249655_-	ENSG00000184898.6	ENST00000331426	hsa-miR-10399-5p	151249654	151249660	7mer-m8	151249653	151249674	152	-10.46
CAediting_217952	chr2_151249656_-	ENSG00000184898.6	ENST00000331426	hsa-miR-10399-5p	151249654	151249660	7mer-m8	151249653	151249674	152	-10.46
CAediting_217972	chr2_151250530_-	ENSG00000184898.6	ENST00000331426	hsa-miR-12114	151250527	151250533	7mer-m8	151250526	151250548	151	-21.38
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-12127	151250493	151250499	7mer-m8	151250492	151250516	140	-18.66
CAediting_217924	chr2_151249499_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1251-5p	151249498	151249504	7mer-m8	151249497	151249517	152	-19.84
CAediting_217925	chr2_151249501_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1251-5p	151249498	151249504	7mer-m8	151249497	151249517	152	-19.84
CAediting_217924	chr2_151249499_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1287-3p	151249499	151249505	7mer-m8	151249498	151249520	144	-20
CAediting_217925	chr2_151249501_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1287-3p	151249499	151249505	7mer-m8	151249498	151249520	144	-20
CAediting_217968	chr2_151250498_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1304-5p	151250498	151250504	7mer-m8	151250497	151250518	148	-18.67
CAediting_217969	chr2_151250499_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1304-5p	151250498	151250504	7mer-m8	151250497	151250518	148	-18.67
CAediting_217948	chr2_151249639_-	ENSG00000184898.6	ENST00000331426	hsa-miR-150-5p	151249638	151249644	7mer-m8	151249637	151249658	140	-15.8
CAediting_217940	chr2_151249578_-	ENSG00000184898.6	ENST00000331426	hsa-miR-193b-5p	151249573	151249580	8mer-1a	151249573	151249594	146	-15.55
CAediting_217955	chr2_151249668_-	ENSG00000184898.6	ENST00000331426	hsa-miR-197-3p	151249668	151249674	7mer-m8	151249667	151249689	149	-20.37
CAediting_217921	chr2_151249486_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1976	151249484	151249491	8mer-1a	151249484	151249503	147	-20.23
CAediting_217922	chr2_151249489_-	ENSG00000184898.6	ENST00000331426	hsa-miR-1976	151249484	151249491	8mer-1a	151249484	151249503	147	-20.23
CAediting_217916	chr2_151249454_-	ENSG00000184898.6	ENST00000331426	hsa-miR-2276-3p	151249453	151249459	7mer-m8	151249452	151249473	149	-17.98
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-302a-3p	151249644	151249650	7mer-m8	151249643	151249664	147	-13.12
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-302b-3p	151249644	151249650	7mer-m8	151249643	151249670	148	-9.93
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-302c-3p	151249644	151249650	7mer-m8	151249643	151249670	148	-11.96
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-302e	151249644	151249650	7mer-m8	151249643	151249659	141	-8.62
CAediting_217960	chr2_151250354_-	ENSG00000184898.6	ENST00000331426	hsa-miR-30b-3p	151250353	151250360	8mer-1a	151250353	151250374	151	-17.42
CAediting_217940	chr2_151249578_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3170	151249573	151249579	7mer-m8	151249572	151249593	143	-13.53
CAediting_217973	chr2_151250542_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3174	151250540	151250545	6mer	151250539	151250559	142	-24.91
CAediting_217975	chr2_151250561_-	ENSG00000184898.6	ENST00000331426	hsa-miR-324-3p	151250557	151250563	7mer-m8	151250556	151250578	148	-24.44
CAediting_217963	chr2_151250429_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3675-3p	151250424	151250430	7mer-m8	151250423	151250444	145	-12.58
CAediting_217960	chr2_151250354_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3689a-3p	151250353	151250360	8mer-1a	151250353	151250373	143	-22.02
CAediting_217960	chr2_151250354_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3689b-3p	151250353	151250360	8mer-1a	151250353	151250373	143	-20.35
CAediting_217960	chr2_151250354_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3689c	151250353	151250360	8mer-1a	151250353	151250373	143	-20.35
CAediting_217972	chr2_151250530_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3689d	151250525	151250531	7mer-m8	151250524	151250544	150	-16.17
CAediting_217972	chr2_151250530_-	ENSG00000184898.6	ENST00000331426	hsa-miR-3689d	151250525	151250531	7mer-m8	151250524	151250544	150	-16.17
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-372-3p	151249644	151249650	7mer-m8	151249643	151249670	154	-19.11
CAediting_217945	chr2_151249612_-	ENSG00000184898.6	ENST00000331426	hsa-miR-378a-5p	151249609	151249615	7mer-m8	151249608	151249630	148	-22.9
CAediting_217975	chr2_151250561_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4252	151250556	151250562	7mer-m8	151250555	151250575	149	-21.82
CAediting_217915	chr2_151249450_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4284	151249446	151249453	8mer-1a	151249446	151249463	144	-14.03
CAediting_217956	chr2_151250331_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4284	151250327	151250334	8mer-1a	151250327	151250344	143	-15.61
CAediting_217909	chr2_151249405_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4294	151249401	151249407	7mer-m8	151249400	151249416	140	-14.25
CAediting_217963	chr2_151250429_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4684-5p	151250425	151250431	7mer-m8	151250424	151250445	152	-14.13
CAediting_217943	chr2_151249588_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4716-5p	151249583	151249589	7mer-m8	151249582	151249603	140	-11.49
CAediting_217929	chr2_151249549_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4735-5p	151249548	151249554	7mer-m8	151249547	151249568	140	-5.48
CAediting_217930	chr2_151249552_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4735-5p	151249548	151249554	7mer-m8	151249547	151249568	140	-5.48
CAediting_217931	chr2_151249553_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4735-5p	151249548	151249554	7mer-m8	151249547	151249568	140	-5.48
CAediting_217975	chr2_151250561_-	ENSG00000184898.6	ENST00000331426	hsa-miR-4793-3p	151250560	151250566	7mer-m8	151250559	151250581	149	-19.67
CAediting_217950	chr2_151249650_-	ENSG00000184898.6	ENST00000331426	hsa-miR-5089-5p	151249650	151249656	7mer-m8	151249649	151249668	150	-12.89
CAediting_217951	chr2_151249655_-	ENSG00000184898.6	ENST00000331426	hsa-miR-5089-5p	151249650	151249656	7mer-m8	151249649	151249668	150	-12.89
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-512-3p	151249645	151249651	7mer-m8	151249644	151249665	149	-15.56
CAediting_217950	chr2_151249650_-	ENSG00000184898.6	ENST00000331426	hsa-miR-512-3p	151249645	151249651	7mer-m8	151249644	151249665	149	-15.56
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-512-3p	151249645	151249651	7mer-m8	151249644	151249665	149	-15.56
CAediting_217950	chr2_151249650_-	ENSG00000184898.6	ENST00000331426	hsa-miR-512-3p	151249645	151249651	7mer-m8	151249644	151249665	149	-15.56
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-519d-3p	151249643	151249649	7mer-m8	151249642	151249662	146	-14.54
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520a-3p	151249644	151249650	7mer-m8	151249643	151249664	140	-11.04
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520b-3p	151249644	151249650	7mer-m8	151249643	151249662	141	-16.53
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520c-3p	151249644	151249650	7mer-m8	151249643	151249663	146	-16.53
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520d-3p	151249644	151249650	7mer-m8	151249643	151249664	140	-13.65
CAediting_217965	chr2_151250440_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520d-5p	151250440	151250445	6mer	151250439	151250460	142	-13.73
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520e-3p	151249644	151249650	7mer-m8	151249643	151249663	140	-13.33
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520g-3p	151249642	151249648	7mer-m8	151249641	151249664	151	-17.03
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-520h	151249642	151249648	7mer-m8	151249641	151249662	150	-15.08
CAediting_217949	chr2_151249647_-	ENSG00000184898.6	ENST00000331426	hsa-miR-526b-3p	151249643	151249649	7mer-m8	151249642	151249662	146	-16.21
CAediting_217974	chr2_151250552_-	ENSG00000184898.6	ENST00000331426	hsa-miR-5694	151250549	151250554	6mer	151250548	151250569	150	-22.41
CAediting_217972	chr2_151250530_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6134	151250526	151250532	7mer-m8	151250525	151250542	151	-20.09
CAediting_217947	chr2_151249620_-	ENSG00000184898.6	ENST00000331426	hsa-miR-640	151249620	151249626	7mer-m8	151249619	151249641	150	-23.95
CAediting_217951	chr2_151249655_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6504-3p	151249654	151249660	7mer-m8	151249653	151249672	140	-7.64
CAediting_217952	chr2_151249656_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6504-3p	151249654	151249660	7mer-m8	151249653	151249672	140	-7.64
CAediting_217950	chr2_151249650_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6506-5p	151249649	151249655	7mer-m8	151249648	151249667	147	-15.89
CAediting_217922	chr2_151249489_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6747-3p	151249486	151249493	8mer-1a	151249486	151249508	154	-28.07
CAediting_217969	chr2_151250499_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6765-5p	151250498	151250504	7mer-1a	151250498	151250519	155	-31.61
CAediting_217912	chr2_151249413_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6773-3p	151249411	151249418	8mer-1a	151249411	151249432	142	-15.63
CAediting_217948	chr2_151249639_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6778-3p	151249636	151249642	7mer-m8	151249635	151249655	143	-13.97
CAediting_217960	chr2_151250354_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6779-5p	151250353	151250360	8mer-1a	151250353	151250376	147	-25.77
CAediting_217923	chr2_151249493_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6787-3p	151249492	151249497	6mer	151249491	151249512	155	-28.25
CAediting_217926	chr2_151249513_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6802-5p	151249513	151249519	7mer-m8	151249512	151249531	146	-17.95
CAediting_217966	chr2_151250475_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6804-3p	151250470	151250476	7mer-m8	151250469	151250491	155	-18.29
CAediting_217961	chr2_151250407_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6831-3p	151250403	151250410	8mer-1a	151250403	151250423	142	-14.52
CAediting_217939	chr2_151249567_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6832-5p	151249566	151249572	7mer-m8	151249565	151249587	142	-15.43
CAediting_217972	chr2_151250530_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6851-5p	151250525	151250531	7mer-m8	151250524	151250550	150	-29.83
CAediting_217940	chr2_151249578_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6855-5p	151249573	151249579	7mer-m8	151249572	151249598	147	-16.05
CAediting_217928	chr2_151249541_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6872-3p	151249538	151249544	7mer-m8	151249537	151249557	141	-15.02
CAediting_217927	chr2_151249523_-	ENSG00000184898.6	ENST00000331426	hsa-miR-7151-3p	151249523	151249529	7mer-m8	151249522	151249542	140	-17.98
CAediting_217946	chr2_151249618_-	ENSG00000184898.6	ENST00000331426	hsa-miR-8070	151249617	151249623	7mer-1a	151249617	151249636	141	-16.51
CAediting_217947	chr2_151249620_-	ENSG00000184898.6	ENST00000331426	hsa-miR-8070	151249617	151249623	7mer-1a	151249617	151249636	141	-16.51
CAediting_217959	chr2_151250353_-	ENSG00000184898.6	ENST00000331426	hsa-miR-887-5p	151250352	151250359	8mer-1a	151250352	151250372	147	-13.82
CAediting_217960	chr2_151250354_-	ENSG00000184898.6	ENST00000331426	hsa-miR-887-5p	151250352	151250359	8mer-1a	151250352	151250372	147	-13.82
CAediting_217909	chr2_151249405_-	ENSG00000184898.6	ENST00000331426	hsa-miR-924	151249402	151249407	6mer	151249401	151249420	144	-19.94
CAediting_217910	chr2_151249407_-	ENSG00000184898.6	ENST00000331426	hsa-miR-924	151249402	151249407	6mer	151249401	151249420	144	-19.94
CAediting_217954	chr2_151249664_-	ENSG00000184898.6	ENST00000331426	hsa-miR-937-5p	151249664	151249670	7mer-m8	151249663	151249682	141	-19.24
CAediting_217955	chr2_151249668_-	ENSG00000184898.6	ENST00000331426	hsa-miR-937-5p	151249664	151249670	7mer-m8	151249663	151249682	141	-19.24

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000184898.6	ENST00000331426	hsa-miR-200b-3p	151248276	151248282	7mer-m8	151248275	151248296	145	-11.56
CAediting_1229415	chr17_67471547_+	ENSG00000184898.6	ENST00000331426	hsa-miR-548aa	151248786	151248792	7mer-m8	151248785	151248809	148	-14.4
CAediting_1368054	chr19_46709310_-	ENSG00000184898.6	ENST00000331426	hsa-miR-320e	151249731	151249737	7mer-m8	151249730	151249747	140	-13.77
CAediting_86358	chr1_109598906_+	ENSG00000184898.6	ENST00000331426	hsa-miR-197-5p	151250368	151250374	7mer-m8	151250367	151250392	154	-31.41
CAediting_77128	chr1_85133844_+	ENSG00000184898.6	ENST00000331426	hsa-miR-4423-3p	151250467	151250473	7mer-m8	151250466	151250486	145	-16.18
CAediting_524911	chr7_5495852_-	ENSG00000184898.6	ENST00000409092	hsa-miR-589-3p	151261098	151261105	8mer-1a	151261098	151261126	147	-19.69

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000184898.6	ENST00000331426	hsa-miR-1303	151248429	151248436	8mer-1a	151248429	151248450	148	-14.85
CAediting_1160181	chr17_7017644_-	ENSG00000184898.6	ENST00000331426	hsa-miR-195-3p	151249883	151249889	7mer-m8	151249882	151249903	154	-11.97
CAediting_228905	chr2_188297554_+	ENSG00000184898.6	ENST00000331426	hsa-miR-561-3p	151250300	151250306	7mer-m8	151250299	151250320	140	-9.03
CAediting_980496	chr14_31014685_-	ENSG00000184898.6	ENST00000331426	hsa-miR-624-3p	151248521	151248526	6mer	151248520	151248543	140	-14.28
CAediting_980496	chr14_31014685_-	ENSG00000184898.6	ENST00000331426	hsa-miR-624-3p	151248223	151248229	7mer-m8	151248222	151248245	155	-11.53
CAediting_980496	chr14_31014685_-	ENSG00000184898.6	ENST00000331426	hsa-miR-624-3p	151250377	151250383	7mer-m8	151250376	151250396	144	-16.44
CAediting_580943	chr7_100356700_+	ENSG00000184898.6	ENST00000331426	hsa-miR-6840-3p	151250521	151250527	7mer-m8	151250520	151250545	143	-22.37
CAediting_1399425	chr20_1392958_-	ENSG00000184898.6	ENST00000331426	hsa-miR-6869-5p	151248191	151248197	7mer-m8	151248190	151248211	148	-21.74

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for RBM43

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000331426.5	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_217905	ENST00000331426.5	chr2_151249384_-	-1407.40	-1407.30	-1426.20
CAediting_217906	ENST00000331426.5	chr2_151249390_-	-1407.40	-1407.30	-1426.20
CAediting_217907	ENST00000331426.5	chr2_151249392_-	-1407.40	-1407.30	-1426.20
CAediting_217908	ENST00000331426.5	chr2_151249393_-	-1407.40	-1407.30	-1426.20
CAediting_217909	ENST00000331426.5	chr2_151249405_-	-1406.70	-1407.30	-1426.20
CAediting_217910	ENST00000331426.5	chr2_151249407_-	-1406.40	-1407.30	-1426.20
CAediting_217911	ENST00000331426.5	chr2_151249411_-	-1406.40	-1407.30	-1426.20
CAediting_217912	ENST00000331426.5	chr2_151249413_-	-1406.60	-1407.30	-1426.20
CAediting_217913	ENST00000331426.5	chr2_151249445_-	-1407.20	-1407.30	-1426.20
CAediting_217914	ENST00000331426.5	chr2_151249446_-	-1413.30	-1407.30	-1426.20
CAediting_217915	ENST00000331426.5	chr2_151249450_-	-1406.40	-1407.30	-1426.20
CAediting_217916	ENST00000331426.5	chr2_151249454_-	-1406.60	-1407.30	-1426.20
CAediting_217917	ENST00000331426.5	chr2_151249467_-	-1406.40	-1407.30	-1426.20
CAediting_217918	ENST00000331426.5	chr2_151249474_-	-1407.30	-1407.30	-1426.20
CAediting_217919	ENST00000331426.5	chr2_151249475_-	-1406.80	-1407.30	-1426.20
CAediting_217920	ENST00000331426.5	chr2_151249483_-	-1407.30	-1407.30	-1426.20
CAediting_217921	ENST00000331426.5	chr2_151249486_-	-1406.40	-1407.30	-1426.20
CAediting_217922	ENST00000331426.5	chr2_151249489_-	-1406.60	-1407.30	-1426.20
CAediting_217923	ENST00000331426.5	chr2_151249493_-	-1406.40	-1407.30	-1426.20
CAediting_217924	ENST00000331426.5	chr2_151249499_-	-1407.30	-1407.30	-1426.20
CAediting_217925	ENST00000331426.5	chr2_151249501_-	-1407.30	-1407.30	-1426.20
CAediting_217926	ENST00000331426.5	chr2_151249513_-	-1407.30	-1407.30	-1426.20
CAediting_217927	ENST00000331426.5	chr2_151249523_-	-1407.00	-1407.30	-1426.20
CAediting_217928	ENST00000331426.5	chr2_151249541_-	-1413.10	-1407.30	-1426.20
CAediting_217929	ENST00000331426.5	chr2_151249549_-	-1407.00	-1407.30	-1426.20
CAediting_217930	ENST00000331426.5	chr2_151249552_-	-1407.60	-1407.30	-1426.20
CAediting_217931	ENST00000331426.5	chr2_151249553_-	-1410.00	-1407.30	-1426.20
CAediting_217932	ENST00000331426.5	chr2_151249554_-	-1407.40	-1407.30	-1426.20
CAediting_217933	ENST00000331426.5	chr2_151249555_-	-1407.40	-1407.30	-1426.20
CAediting_217934	ENST00000331426.5	chr2_151249556_-	-1407.00	-1407.30	-1426.20
CAediting_217935	ENST00000331426.5	chr2_151249558_-	-1407.30	-1407.30	-1426.20
CAediting_217936	ENST00000331426.5	chr2_151249560_-	-1407.60	-1407.30	-1426.20
CAediting_217937	ENST00000331426.5	chr2_151249562_-	-1407.70	-1407.30	-1426.20
CAediting_217938	ENST00000331426.5	chr2_151249563_-	-1407.70	-1407.30	-1426.20
CAediting_217939	ENST00000331426.5	chr2_151249567_-	-1407.30	-1407.30	-1426.20
CAediting_217940	ENST00000331426.5	chr2_151249578_-	-1407.30	-1407.30	-1426.20
CAediting_217941	ENST00000331426.5	chr2_151249580_-	-1407.70	-1407.30	-1426.20
CAediting_217942	ENST00000331426.5	chr2_151249581_-	-1413.70	-1407.30	-1426.20
CAediting_217943	ENST00000331426.5	chr2_151249588_-	-1407.30	-1407.30	-1426.20
CAediting_217944	ENST00000331426.5	chr2_151249589_-	-1407.40	-1407.30	-1426.20
CAediting_217945	ENST00000331426.5	chr2_151249612_-	-1406.60	-1407.30	-1426.20
CAediting_217946	ENST00000331426.5	chr2_151249618_-	-1407.00	-1407.30	-1426.20
CAediting_217947	ENST00000331426.5	chr2_151249620_-	-1406.90	-1407.30	-1426.20
CAediting_217948	ENST00000331426.5	chr2_151249639_-	-1406.40	-1407.30	-1426.20
CAediting_217949	ENST00000331426.5	chr2_151249647_-	-1406.90	-1407.30	-1426.20
CAediting_217950	ENST00000331426.5	chr2_151249650_-	-1406.60	-1407.30	-1426.20
CAediting_217951	ENST00000331426.5	chr2_151249655_-	-1407.30	-1407.30	-1426.20
CAediting_217952	ENST00000331426.5	chr2_151249656_-	-1407.40	-1407.30	-1426.20
CAediting_217953	ENST00000331426.5	chr2_151249662_-	-1413.30	-1407.30	-1426.20
CAediting_217954	ENST00000331426.5	chr2_151249664_-	-1404.20	-1407.30	-1426.20
CAediting_217955	ENST00000331426.5	chr2_151249668_-	-1414.50	-1407.30	-1426.20
CAediting_217956	ENST00000331426.5	chr2_151250331_-	-1406.40	-1407.30	-1426.20
CAediting_217957	ENST00000331426.5	chr2_151250340_-	-1407.30	-1407.30	-1426.20
CAediting_217958	ENST00000331426.5	chr2_151250352_-	-1407.00	-1407.30	-1426.20
CAediting_217959	ENST00000331426.5	chr2_151250353_-	-1407.40	-1407.30	-1426.20
CAediting_217960	ENST00000331426.5	chr2_151250354_-	-1407.00	-1407.30	-1426.20
CAediting_217961	ENST00000331426.5	chr2_151250407_-	-1407.00	-1407.30	-1426.20
CAediting_217962	ENST00000331426.5	chr2_151250415_-	-1407.60	-1407.30	-1426.20
CAediting_217963	ENST00000331426.5	chr2_151250429_-	-1407.00	-1407.30	-1426.20
CAediting_217964	ENST00000331426.5	chr2_151250432_-	-1407.00	-1407.30	-1426.20
CAediting_217965	ENST00000331426.5	chr2_151250440_-	-1407.30	-1407.30	-1426.20
CAediting_217966	ENST00000331426.5	chr2_151250475_-	-1406.60	-1407.30	-1426.20
CAediting_217967	ENST00000331426.5	chr2_151250477_-	-1407.30	-1407.30	-1426.20
CAediting_217968	ENST00000331426.5	chr2_151250498_-	-1413.40	-1407.30	-1426.20
CAediting_217969	ENST00000331426.5	chr2_151250499_-	-1406.60	-1407.30	-1426.20
CAediting_217970	ENST00000331426.5	chr2_151250515_-	-1412.70	-1407.30	-1426.20
CAediting_217971	ENST00000331426.5	chr2_151250517_-	-1406.90	-1407.30	-1426.20
CAediting_217972	ENST00000331426.5	chr2_151250530_-	-1406.90	-1407.30	-1426.20
CAediting_217973	ENST00000331426.5	chr2_151250542_-	-1406.90	-1407.30	-1426.20
CAediting_217974	ENST00000331426.5	chr2_151250552_-	-1413.50	-1407.30	-1426.20
CAediting_217975	ENST00000331426.5	chr2_151250561_-	-1406.60	-1407.30	-1426.20

Top

Relation with ADAR for RBM43

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_217913	chr2_151249445_-	0.0284883350748471	0.17950390771773	.	.	.	.
THCA	CAediting_217913	chr2_151249445_-	0.00208195027327251	0.25450423019369	.	.	.	.
OV	CAediting_217913	chr2_151249445_-	0.00424997876691811	0.18991908473798	.	.	.	.
BRCA	CAediting_217914	chr2_151249446_-	3.15659072365667e-07	0.36724947482237	.	.	.	.
STAD	CAediting_217914	chr2_151249446_-	0.00124650776149103	0.424251537201054	.	.	.	.
THCA	CAediting_217914	chr2_151249446_-	9.6364685876326e-06	0.314907949945192	.	.	.	.
OV	CAediting_217914	chr2_151249446_-	1.04816809730743e-05	0.262279254698997	.	.	.	.
SKCM	CAediting_217914	chr2_151249446_-	3.16186064339879e-07	0.6002841583414	.	.	.	.
KIRC	CAediting_217915	chr2_151249450_-	0.0349608553263076	0.212218268253475	.	.	.	.
OV	CAediting_217919	chr2_151249475_-	0.0329110416364493	0.160435250242959	.	.	.	.
THCA	CAediting_217922	chr2_151249489_-	0.0478976341108279	0.240822516098437	.	.	.	.
OV	CAediting_217929	chr2_151249549_-	0.00017505832792776	0.350381059544115	.	.	.	.
THCA	CAediting_217951	chr2_151249655_-	0.00560894758194598	0.327758825919311	.	.	.	.
OV	CAediting_217951	chr2_151249655_-	0.0054833246052719	0.225709967073367	0.0221200760775467	0.186754258231033	.	.
BRCA	CAediting_217952	chr2_151249656_-	0.0034799288068762	0.273859730336931	.	.	.	.
KIRC	CAediting_217952	chr2_151249656_-	8.50686218834941e-05	0.279741969516522	.	.	.	.
OV	CAediting_217952	chr2_151249656_-	4.29485715267991e-06	0.329783617930189	.	.	.	.

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Relation with cancer stages for RBM43

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_217914	chr2_151249446_-	0.0416767468077271	0.152838334395183
BRCA	pathologic_stage	CAediting_217915	chr2_151249450_-	0.00031299231777093	0.400001561373409
KIRC	pathologic_stage	CAediting_217928	chr2_151249541_-	0.00162385262938939	0.360119818720332
THCA	pathologic_stage	CAediting_217914	chr2_151249446_-	0.00495420589507372	0.203602435800587

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Relation with survival for RBM43

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BRCA	CAediting_217914	chr2_151249446_-	0.0379352795902723	0.0089588	28.694
KIRC	CAediting_217922	chr2_151249489_-	0.0133109410341753	0.037884	128.298

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RelatedDrugs for RBM43

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for RBM43

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene