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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: EIF3E (CAeditome ID:3646)

Gene summary for EIF3E

check button Gene summary
Gene informationGene symbol

EIF3E

Gene ID

3646

Gene nameeukaryotic translation initiation factor 3 subunit E
SynonymsEIF3-P48|EIF3S6|INT6|eIF3-p46
Cytomap

8q23.1

Type of geneprotein-coding
Descriptioneukaryotic translation initiation factor 3 subunit EeIF-3 p48eukaryotic translation initiation factor 3 subunit 6eukaryotic translation initiation factor 3, subunit 6 (48kD)eukaryotic translation initiation factor 3, subunit 6 48kDamammary tumor-asso
Modification date20210518
UniProtAcc

P60228

Context- 33868586(Decreased expression of the translation factor eIF3e induces senescence in breast cancer cells via suppression of PARP1 and activation of mTORC1)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
EIF3E

GO:0016605

Eukaryotic translation initiation factor 3 subunit E

10504338

EIF3E

GO:0003743

Eukaryotic translation initiation factor 3 subunit E

17581632

EIF3E

GO:0003743

Eukaryotic translation initiation factor 3 subunit E

25849773

EIF3E

GO:0006413

Eukaryotic translation initiation factor 3 subunit E

17581632

EIF3E

GO:0005634

Eukaryotic translation initiation factor 3 subunit E

10504338

EIF3E

GO:0005737

Eukaryotic translation initiation factor 3 subunit E

10504338

EIF3E

GO:0005829

Eukaryotic translation initiation factor 3 subunit E

0000052

EIF3E

GO:0005852

Eukaryotic translation initiation factor 3 subunit E

17322308

EIF3E

GO:0005852

Eukaryotic translation initiation factor 3 subunit E

17581632

EIF3E

GO:0005852

Eukaryotic translation initiation factor 3 subunit E

18599441

EIF3E

GO:0005852

Eukaryotic translation initiation factor 3 subunit E

25849773

EIF3E

GO:0005852

Eukaryotic translation initiation factor 3 subunit E

9295280


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RNA A-to-I events for EIF3E

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000104408.8

check button RNA A-to-I editing events in Cancer.
CAediting_656795(108204299, -), CAediting_656796(108204339, -), CAediting_656797(108204357, -), CAediting_656798(108204427, -), CAediting_656799(108204430, -), CAediting_656800(108204477, -), CAediting_656801(108204479, -), CAediting_656802(108204497, -), CAediting_656803(108215506, -), CAediting_656804(108218819, -), CAediting_656805(108218826, -), CAediting_656806(108218841, -), CAediting_656807(108218855, -), CAediting_656808(108218856, -), CAediting_656809(108218860, -), CAediting_656810(108218867, -), CAediting_656811(108218872, -), CAediting_656812(108218880, -), CAediting_656813(108218889, -), CAediting_656814(108218890, -), CAediting_656815(108218895, -), CAediting_656816(108218899, -), CAediting_656817(108218905, -), CAediting_656818(108218912, -), CAediting_656819(108218915, -), CAediting_656820(108218916, -), CAediting_656821(108218922, -), CAediting_656822(108218928, -), CAediting_656823(108218948, -), CAediting_656824(108218952, -), CAediting_656825(108218956, -), CAediting_656826(108218959, -), CAediting_656827(108218979, -), CAediting_656828(108218980, -), CAediting_656829(108218981, -), CAediting_656830(108218987, -), CAediting_656831(108218989, -), CAediting_656832(108218990, -), CAediting_656833(108218999, -), CAediting_656834(108219002, -), CAediting_656835(108219004, -), CAediting_656836(108219010, -), CAediting_656837(108219013, -), CAediting_656838(108219027, -), CAediting_656839(108219031, -), CAediting_656840(108219036, -), CAediting_656841(108219049, -), CAediting_656842(108219057, -), CAediting_656843(108219058, -), CAediting_656844(108219066, -), CAediting_656845(108219679, -), CAediting_656846(108219977, -), CAediting_656847(108220031, -), CAediting_656848(108220118, -), CAediting_656849(108220898, -), CAediting_656850(108220944, -), CAediting_656851(108222114, -), CAediting_656852(108222261, -), CAediting_656853(108222318, -), CAediting_656854(108222331, -), CAediting_656855(108224110, -), CAediting_656856(108224196, -), CAediting_656857(108225987, -), CAediting_656858(108226006, -), CAediting_656859(108233575, -), CAediting_656860(108233624, -), CAediting_656861(108233625, -), CAediting_656862(108233650, -), CAediting_656863(108233720, -), CAediting_656864(108233729, -), CAediting_656865(108233733, -), CAediting_656866(108233754, -), CAediting_656867(108233777, -), CAediting_656868(108233782, -), CAediting_656869(108234090, -), CAediting_656870(108234197, -), CAediting_656871(108234250, -), CAediting_656872(108236765, -), CAediting_656873(108236830, -), CAediting_656874(108237016, -), CAediting_656875(108237360, -), CAediting_656876(108237363, -), CAediting_656877(108237538, -), CAediting_656878(108239212, -), CAediting_656879(108239355, -), CAediting_656880(108239474, -), CAediting_656881(108239481, -), CAediting_656882(108243440, -), CAediting_656883(108400846, -), CAediting_656884(108400851, -), CAediting_656885(108400865, -),

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RNA editing positional annotations for EIF3E using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_656795chr8_108204299_-ncRNA_intronic
CAediting_656796chr8_108204339_-ncRNA_intronic
CAediting_656797chr8_108204357_-ncRNA_intronic
CAediting_656798chr8_108204427_-ncRNA_intronic
CAediting_656799chr8_108204430_-ncRNA_intronic
CAediting_656800chr8_108204477_-ncRNA_intronic
CAediting_656801chr8_108204479_-ncRNA_intronic
CAediting_656802chr8_108204497_-ncRNA_intronic
CAediting_656803chr8_108215506_-ncRNA_intronic
CAediting_656804chr8_108218819_-ncRNA_intronic
CAediting_656805chr8_108218826_-ncRNA_intronic
CAediting_656806chr8_108218841_-ncRNA_intronic
CAediting_656807chr8_108218855_-ncRNA_intronic
CAediting_656808chr8_108218856_-ncRNA_intronic
CAediting_656809chr8_108218860_-ncRNA_intronic
CAediting_656810chr8_108218867_-ncRNA_intronic
CAediting_656811chr8_108218872_-ncRNA_intronic
CAediting_656812chr8_108218880_-ncRNA_intronic
CAediting_656813chr8_108218889_-ncRNA_intronic
CAediting_656814chr8_108218890_-ncRNA_intronic
CAediting_656815chr8_108218895_-ncRNA_intronic
CAediting_656816chr8_108218899_-ncRNA_intronic
CAediting_656817chr8_108218905_-ncRNA_intronic
CAediting_656818chr8_108218912_-ncRNA_intronic
CAediting_656819chr8_108218915_-ncRNA_intronic
CAediting_656820chr8_108218916_-ncRNA_intronic
CAediting_656821chr8_108218922_-ncRNA_intronic
CAediting_656822chr8_108218928_-ncRNA_intronic
CAediting_656823chr8_108218948_-ncRNA_intronic
CAediting_656824chr8_108218952_-ncRNA_intronic
CAediting_656825chr8_108218956_-ncRNA_intronic
CAediting_656826chr8_108218959_-ncRNA_intronic
CAediting_656827chr8_108218979_-ncRNA_intronic
CAediting_656828chr8_108218980_-ncRNA_intronic
CAediting_656829chr8_108218981_-ncRNA_intronic
CAediting_656830chr8_108218987_-ncRNA_intronic
CAediting_656831chr8_108218989_-ncRNA_intronic
CAediting_656832chr8_108218990_-ncRNA_intronic
CAediting_656833chr8_108218999_-ncRNA_intronic
CAediting_656834chr8_108219002_-ncRNA_intronic
CAediting_656835chr8_108219004_-ncRNA_intronic
CAediting_656836chr8_108219010_-ncRNA_intronic
CAediting_656837chr8_108219013_-ncRNA_intronic
CAediting_656838chr8_108219027_-ncRNA_intronic
CAediting_656839chr8_108219031_-ncRNA_intronic
CAediting_656840chr8_108219036_-ncRNA_intronic
CAediting_656841chr8_108219049_-ncRNA_intronic
CAediting_656842chr8_108219057_-ncRNA_intronic
CAediting_656843chr8_108219058_-ncRNA_intronic
CAediting_656844chr8_108219066_-ncRNA_intronic
CAediting_656845chr8_108219679_-ncRNA_intronic
CAediting_656846chr8_108219977_-ncRNA_intronic
CAediting_656847chr8_108220031_-ncRNA_intronic
CAediting_656848chr8_108220118_-ncRNA_intronic
CAediting_656849chr8_108220898_-ncRNA_intronic
CAediting_656850chr8_108220944_-ncRNA_intronic
CAediting_656851chr8_108222114_-ncRNA_intronic
CAediting_656852chr8_108222261_-ncRNA_intronic
CAediting_656853chr8_108222318_-ncRNA_intronic
CAediting_656854chr8_108222331_-ncRNA_intronic
CAediting_656855chr8_108224110_-ncRNA_intronic
CAediting_656856chr8_108224196_-ncRNA_intronic
CAediting_656857chr8_108225987_-ncRNA_intronic
CAediting_656858chr8_108226006_-ncRNA_intronic
CAediting_656859chr8_108233575_-ncRNA_intronic
CAediting_656860chr8_108233624_-ncRNA_intronic
CAediting_656861chr8_108233625_-exonic
CAediting_656862chr8_108233650_-exonic
CAediting_656863chr8_108233720_-ncRNA_intronic
CAediting_656864chr8_108233729_-ncRNA_intronic
CAediting_656865chr8_108233733_-ncRNA_intronic
CAediting_656866chr8_108233754_-ncRNA_intronic
CAediting_656867chr8_108233777_-ncRNA_intronic
CAediting_656868chr8_108233782_-ncRNA_intronic
CAediting_656869chr8_108234090_-ncRNA_intronic
CAediting_656870chr8_108234197_-ncRNA_intronic
CAediting_656871chr8_108234250_-ncRNA_intronic
CAediting_656872chr8_108236765_-ncRNA_intronic
CAediting_656873chr8_108236830_-ncRNA_intronic
CAediting_656874chr8_108237016_-ncRNA_intronic
CAediting_656875chr8_108237360_-ncRNA_intronic
CAediting_656876chr8_108237363_-ncRNA_intronic
CAediting_656877chr8_108237538_-ncRNA_intronic
CAediting_656878chr8_108239212_-ncRNA_intronic
CAediting_656879chr8_108239355_-ncRNA_intronic
CAediting_656880chr8_108239474_-ncRNA_intronic
CAediting_656881chr8_108239481_-ncRNA_intronic
CAediting_656882chr8_108243440_-ncRNA_intronic
CAediting_656883chr8_108400846_-ncRNA_intronic
CAediting_656884chr8_108400851_-ncRNA_intronic
CAediting_656885chr8_108400865_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_656795chr8_108204299_-LINEL1L1PB2
CAediting_656796chr8_108204339_-LINEL1L1PB2
CAediting_656797chr8_108204357_-LINEL1L1PB2
CAediting_656798chr8_108204427_-LINEL1L1PB2
CAediting_656799chr8_108204430_-LINEL1L1PB2
CAediting_656800chr8_108204477_-LINEL1L1PB2
CAediting_656801chr8_108204479_-LINEL1L1PB2
CAediting_656802chr8_108204497_-LINEL1L1PB2
CAediting_656803chr8_108215506_-SINEAluAluY
CAediting_656804chr8_108218819_-SINEAluAluSz
CAediting_656805chr8_108218826_-SINEAluAluSz
CAediting_656806chr8_108218841_-SINEAluAluSz
CAediting_656807chr8_108218855_-SINEAluAluSz
CAediting_656808chr8_108218856_-SINEAluAluSz
CAediting_656809chr8_108218860_-SINEAluAluSz
CAediting_656810chr8_108218867_-SINEAluAluSz
CAediting_656811chr8_108218872_-SINEAluAluSz
CAediting_656812chr8_108218880_-SINEAluAluSz
CAediting_656813chr8_108218889_-SINEAluAluSz
CAediting_656814chr8_108218890_-SINEAluAluSz
CAediting_656815chr8_108218895_-SINEAluAluSz
CAediting_656816chr8_108218899_-SINEAluAluSz
CAediting_656817chr8_108218905_-SINEAluAluSz
CAediting_656818chr8_108218912_-SINEAluAluSz
CAediting_656819chr8_108218915_-SINEAluAluSz
CAediting_656820chr8_108218916_-SINEAluAluSz
CAediting_656821chr8_108218922_-SINEAluAluSz
CAediting_656822chr8_108218928_-SINEAluAluSz
CAediting_656823chr8_108218948_-SINEAluAluSz
CAediting_656824chr8_108218952_-SINEAluAluSz
CAediting_656825chr8_108218956_-SINEAluAluSz
CAediting_656826chr8_108218959_-SINEAluAluSz
CAediting_656827chr8_108218979_-SINEAluAluSz
CAediting_656828chr8_108218980_-SINEAluAluSz
CAediting_656829chr8_108218981_-SINEAluAluSz
CAediting_656830chr8_108218987_-SINEAluAluSz
CAediting_656831chr8_108218989_-SINEAluAluSz
CAediting_656832chr8_108218990_-SINEAluAluSz
CAediting_656833chr8_108218999_-SINEAluAluSz
CAediting_656834chr8_108219002_-SINEAluAluSz
CAediting_656835chr8_108219004_-SINEAluAluSz
CAediting_656836chr8_108219010_-SINEAluAluSz
CAediting_656837chr8_108219013_-SINEAluAluSz
CAediting_656838chr8_108219027_-SINEAluAluSz
CAediting_656839chr8_108219031_-SINEAluAluSz
CAediting_656840chr8_108219036_-SINEAluAluSz
CAediting_656841chr8_108219049_-SINEAluAluSz
CAediting_656842chr8_108219057_-SINEAluAluSz
CAediting_656843chr8_108219058_-SINEAluAluSz
CAediting_656844chr8_108219066_-SINEAluAluSz
CAediting_656845chr8_108219679_-SINEAluAluJb
CAediting_656846chr8_108219977_-SINEAluAluSx1
CAediting_656847chr8_108220031_-SINEAluAluSx1
CAediting_656848chr8_108220118_-SINEAluAluSx1
CAediting_656849chr8_108220898_-SINEAluAluJr
CAediting_656850chr8_108220944_-SINEAluAluJr
CAediting_656851chr8_108222114_-SINEAluAluJr
CAediting_656852chr8_108222261_-SINEAluAluJr
CAediting_656853chr8_108222318_-SINEAluAluJr
CAediting_656854chr8_108222331_-SINEAluAluJr
CAediting_656855chr8_108224110_-SINEAluAluY
CAediting_656856chr8_108224196_-SINEAluAluY
CAediting_656857chr8_108225987_-DNATcMar-TiggerMER6B
CAediting_656858chr8_108226006_-DNATcMar-TiggerMER6B
CAediting_656859chr8_108233575_-SINEAluAluJr4
CAediting_656860chr8_108233624_-SINEAluAluJr4
CAediting_656861chr8_108233625_-SINEAluAluJr4
CAediting_656862chr8_108233650_-SINEAluAluJr4
CAediting_656863chr8_108233720_-SINEAluAluJr4
CAediting_656864chr8_108233729_-SINEAluAluJr4
CAediting_656865chr8_108233733_-SINEAluAluJr4
CAediting_656866chr8_108233754_-SINEAluAluJr4
CAediting_656867chr8_108233777_-SINEAluAluJr4
CAediting_656868chr8_108233782_-SINEAluAluJr4
CAediting_656869chr8_108234090_-SINEAluAluSx
CAediting_656870chr8_108234197_-SINEAluAluSx
CAediting_656871chr8_108234250_-SINEAluAluSx
CAediting_656872chr8_108236765_-SINEAluAluSx1
CAediting_656873chr8_108236830_-SINEAluAluSx1
CAediting_656874chr8_108237016_-SINEAluAluSx1
CAediting_656875chr8_108237360_-SINEAluAluSz
CAediting_656876chr8_108237363_-SINEAluAluSz
CAediting_656877chr8_108237538_-SINEAluAluSz
CAediting_656878chr8_108239212_-SINEAluAluJb
CAediting_656879chr8_108239355_-SINEAluAluJb
CAediting_656880chr8_108239474_-SINEAluAluJb
CAediting_656881chr8_108239481_-SINEAluAluJb
CAediting_656882chr8_108243440_-SINEAluAluY
CAediting_656883chr8_108400846_-SINEAluAluSz
CAediting_656884chr8_108400851_-SINEAluAluSz
CAediting_656885chr8_108400865_-SINEAluAluSz

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RNA A-to-I editing events in the alternative splicing sites for EIF3E

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000104408.8.EIF3E.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000104408.8.EIF3E.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for EIF3E

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for EIF3E

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for EIF3E

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_656859chr8_108233575_-ENSG00000104408.8ENST00000521440hsa-miR-46411082335731082335797mer-m8108233572108233595142.00-13.32
CAediting_656859chr8_108233575_-ENSG00000104408.8ENST00000521440hsa-miR-4747-3p1082335711082335766mer108233570108233593142.00-28.19
CAediting_656859chr8_108233575_-ENSG00000104408.8ENST00000521440hsa-miR-5008-5p1082335701082335767mer-m8108233569108233590152.00-20.54

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_656859chr8_108233575_-ENSG00000104408.8ENST00000521440hsa-miR-2467-5p1082335701082335767mer-m8108233569108233592141-17.76
CAediting_656859chr8_108233575_-ENSG00000104408.8ENST00000521440hsa-miR-6847-3p1082335731082335797mer-m8108233572108233595153-21.93

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for EIF3E

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000521440.4protein_codingSoverviewSoverview
ENST00000518345.1protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_656859ENST00000521440.4chr8_108233575_--195.50-190.70-200.40
CAediting_656860ENST00000521440.4chr8_108233624_--195.70-190.70-200.40
CAediting_656861ENST00000521440.4chr8_108233625_--195.60-190.70-200.40
CAediting_656862ENST00000521440.4chr8_108233650_--190.00-190.70-200.40
CAediting_656882ENST00000518345.1chr8_108243440_--150.90-149.30-150.90

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Relation with ADAR for EIF3E

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for EIF3E

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for EIF3E

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for EIF3E

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for EIF3E

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
EIF3EC0152013Adenocarcinoma of lung (disorder)1CTD_human