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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: IGHG3 (CAeditome ID:3502)

Gene summary for IGHG3

check button Gene summary
Gene informationGene symbol

IGHG3

Gene ID

3502

Gene nameimmunoglobulin heavy constant gamma 3 (G3m marker)
SynonymsIgG3
Cytomap

14q32.33

Type of geneother
DescriptionC gamma 3constant region of heavy chain of IgG3immunoglobulin gamma 3 (Gm marker)immunoglobulin heavy constant gamma 3 (Gm marker)secrete-type Ig gamma heavy-chain
Modification date20210531
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for IGHG3

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000211897.6
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1022674(105796074, -), CAediting_1022675(105845390, -), CAediting_1022676(105858401, -), CAediting_1022677(105858880, -), CAediting_1022678(105859095, -), CAediting_1022679(105859100, -), CAediting_1022680(105859110, -), CAediting_1022681(105859117, -), CAediting_1022682(105859141, -), CAediting_1022683(105859296, -), CAediting_1022684(105859382, -), CAediting_1022685(105859536, -), CAediting_1022686(105859558, -), CAediting_1022687(105859566, -), CAediting_1022688(105859721, -), CAediting_1022689(105859726, -), CAediting_1022690(105859743, -), CAediting_1022691(105859787, -), CAediting_1022692(105859807, -), CAediting_1022693(105859813, -), CAediting_1022694(105859817, -), CAediting_1022695(105859818, -), CAediting_1022696(105860291, -), CAediting_1022697(105860309, -), CAediting_1022698(105860325, -), CAediting_1022699(105860340, -), CAediting_1022700(105860350, -), CAediting_1022701(105860355, -), CAediting_1022702(105860365, -), CAediting_1022703(105860385, -), CAediting_1022704(105860391, -), CAediting_1022705(105860392, -), CAediting_1022706(105860395, -), CAediting_1022707(105860396, -), CAediting_1022708(105860401, -), CAediting_1022709(105860419, -), CAediting_1022710(105861603, -), CAediting_1022711(105861846, -), CAediting_1022712(105861873, -), CAediting_1022713(105861910, -), CAediting_1022714(105861934, -), CAediting_1022715(105861968, -), CAediting_1022716(105861976, -), CAediting_1022717(105862388, -), CAediting_1022718(105862390, -), CAediting_1022719(105862479, -), CAediting_1022720(105862488, -), CAediting_1022721(105862497, -), CAediting_1022722(105862529, -), CAediting_1022723(105862573, -), CAediting_1022724(105862588, -), CAediting_1022725(105862595, -), CAediting_1022726(105862612, -), CAediting_1022727(105862734, -), CAediting_1022728(105862751, -), CAediting_1022729(105862772, -), CAediting_1022730(105862796, -), CAediting_1022731(105862847, -), CAediting_1022732(105862853, -), CAediting_1022733(105862873, -), CAediting_1022734(105863223, -), CAediting_1022735(105863712, -), CAediting_1022736(105863726, -), CAediting_1022737(105863779, -), CAediting_1022738(105864043, -), CAediting_1022739(105864045, -), CAediting_1022740(105864069, -), CAediting_1022741(105864634, -), CAediting_1022742(105904949, -), CAediting_1022743(105904971, -), CAediting_1022744(105905000, -), CAediting_1022745(105905093, -), CAediting_1022746(105939784, -), CAediting_1022747(105939799, -), CAediting_1022748(105939800, -), CAediting_1022749(105939805, -), CAediting_1022750(105939830, -), CAediting_1022751(105939832, -), CAediting_1022752(105939834, -), CAediting_1022753(105939839, -), CAediting_1022754(105939846, -), CAediting_1022755(105939849, -), CAediting_1022756(105939857, -), CAediting_1022757(105939874, -), CAediting_1022758(105939898, -), CAediting_1022759(105939902, -), CAediting_1022760(105939924, -), CAediting_1022761(105939926, -), CAediting_1022762(105939962, -), CAediting_1022763(105939998, -), CAediting_1022764(105940002, -), CAediting_1022765(105940012, -), CAediting_1022766(105940032, -), CAediting_1022767(105986121, -), CAediting_1022768(105986131, -), CAediting_1022769(105986578, -), CAediting_1022770(105986580, -), CAediting_1022771(105986582, -), CAediting_1022772(105986628, -), CAediting_1022773(105986660, -), CAediting_1022774(105986684, -), CAediting_1022775(105986693, -), CAediting_1022776(105986695, -), CAediting_1022777(105986706, -), CAediting_1022778(105987015, -), CAediting_1022779(105987077, -), CAediting_1022780(106005152, -), CAediting_1022781(106005159, -), CAediting_1022782(106005177, -), CAediting_1022783(106005180, -), CAediting_1022784(106005208, -), CAediting_1022785(106005217, -), CAediting_1022786(106005227, -), CAediting_1022787(106005240, -), CAediting_1022788(106005291, -), CAediting_1022789(106005323, -), CAediting_1022790(106005354, -), CAediting_1022791(106037905, -), CAediting_1022792(106037909, -), CAediting_1022793(106037927, -), CAediting_1022794(106037929, -), CAediting_1022795(106037954, -), CAediting_1022796(106037956, -), CAediting_1022797(106037985, -), CAediting_1022798(106037986, -), CAediting_1022799(106037989, -), CAediting_1022800(106037992, -), CAediting_1022801(106037995, -), CAediting_1022802(106038014, -), CAediting_1022803(106038027, -), CAediting_1022804(106038036, -), CAediting_1022805(106038042, -), CAediting_1022806(106038060, -), CAediting_1022807(106038070, -), CAediting_1022808(106038074, -), CAediting_1022809(106038088, -), CAediting_1022810(106038112, -),

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RNA editing positional annotations for IGHG3 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1022674chr14_105796074_-intronic
CAediting_1022675chr14_105845390_-exonic
CAediting_1022676chr14_105858401_-ncRNA_exonic
CAediting_1022677chr14_105858880_-intronic
CAediting_1022678chr14_105859095_-intronic
CAediting_1022679chr14_105859100_-intronic
CAediting_1022680chr14_105859110_-intronic
CAediting_1022681chr14_105859117_-intronic
CAediting_1022682chr14_105859141_-intronic
CAediting_1022683chr14_105859296_-intronic
CAediting_1022684chr14_105859382_-intronic
CAediting_1022685chr14_105859536_-ncRNA_exonic
CAediting_1022686chr14_105859558_-intronic
CAediting_1022687chr14_105859566_-intronic
CAediting_1022688chr14_105859721_-intronic
CAediting_1022689chr14_105859726_-intronic
CAediting_1022690chr14_105859743_-ncRNA_exonic
CAediting_1022691chr14_105859787_-ncRNA_exonic
CAediting_1022692chr14_105859807_-intronic
CAediting_1022693chr14_105859813_-intronic
CAediting_1022694chr14_105859817_-intronic
CAediting_1022695chr14_105859818_-intronic
CAediting_1022696chr14_105860291_-intronic
CAediting_1022697chr14_105860309_-intronic
CAediting_1022698chr14_105860325_-intronic
CAediting_1022699chr14_105860340_-intronic
CAediting_1022700chr14_105860350_-intronic
CAediting_1022701chr14_105860355_-intronic
CAediting_1022702chr14_105860365_-intronic
CAediting_1022703chr14_105860385_-intronic
CAediting_1022704chr14_105860391_-intronic
CAediting_1022705chr14_105860392_-intronic
CAediting_1022706chr14_105860395_-intronic
CAediting_1022707chr14_105860396_-intronic
CAediting_1022708chr14_105860401_-intronic
CAediting_1022709chr14_105860419_-intronic
CAediting_1022710chr14_105861603_-intronic
CAediting_1022711chr14_105861846_-intronic
CAediting_1022712chr14_105861873_-intronic
CAediting_1022713chr14_105861910_-intronic
CAediting_1022714chr14_105861934_-intronic
CAediting_1022715chr14_105861968_-intronic
CAediting_1022716chr14_105861976_-intronic
CAediting_1022717chr14_105862388_-intronic
CAediting_1022718chr14_105862390_-intronic
CAediting_1022719chr14_105862479_-intronic
CAediting_1022720chr14_105862488_-intronic
CAediting_1022721chr14_105862497_-intronic
CAediting_1022722chr14_105862529_-intronic
CAediting_1022723chr14_105862573_-intronic
CAediting_1022724chr14_105862588_-intronic
CAediting_1022725chr14_105862595_-intronic
CAediting_1022726chr14_105862612_-intronic
CAediting_1022727chr14_105862734_-intronic
CAediting_1022728chr14_105862751_-intronic
CAediting_1022729chr14_105862772_-intronic
CAediting_1022730chr14_105862796_-intronic
CAediting_1022731chr14_105862847_-intronic
CAediting_1022732chr14_105862853_-intronic
CAediting_1022733chr14_105862873_-intronic
CAediting_1022734chr14_105863223_-exonic
CAediting_1022735chr14_105863712_-intronic
CAediting_1022736chr14_105863726_-intronic
CAediting_1022737chr14_105863779_-intronic
CAediting_1022738chr14_105864043_-intronic
CAediting_1022739chr14_105864045_-intronic
CAediting_1022740chr14_105864069_-intronic
CAediting_1022741chr14_105864634_-exonic
CAediting_1022742chr14_105904949_-intronic
CAediting_1022743chr14_105904971_-intronic
CAediting_1022744chr14_105905000_-intronic
CAediting_1022745chr14_105905093_-intronic
CAediting_1022746chr14_105939784_-exonic
CAediting_1022747chr14_105939799_-exonic
CAediting_1022748chr14_105939800_-exonic
CAediting_1022749chr14_105939805_-exonic
CAediting_1022750chr14_105939830_-exonic
CAediting_1022751chr14_105939832_-exonic
CAediting_1022752chr14_105939834_-exonic
CAediting_1022753chr14_105939839_-exonic
CAediting_1022754chr14_105939846_-exonic
CAediting_1022755chr14_105939849_-exonic
CAediting_1022756chr14_105939857_-exonic
CAediting_1022757chr14_105939874_-exonic
CAediting_1022758chr14_105939898_-exonic
CAediting_1022759chr14_105939902_-exonic
CAediting_1022760chr14_105939924_-exonic
CAediting_1022761chr14_105939926_-exonic
CAediting_1022762chr14_105939962_-exonic
CAediting_1022763chr14_105939998_-exonic
CAediting_1022764chr14_105940002_-exonic
CAediting_1022765chr14_105940012_-exonic
CAediting_1022766chr14_105940032_-exonic
CAediting_1022767chr14_105986121_-intronic
CAediting_1022768chr14_105986131_-intronic
CAediting_1022769chr14_105986578_-intronic
CAediting_1022770chr14_105986580_-intronic
CAediting_1022771chr14_105986582_-exonic;splicing
CAediting_1022772chr14_105986628_-exonic
CAediting_1022773chr14_105986660_-exonic
CAediting_1022774chr14_105986684_-exonic
CAediting_1022775chr14_105986693_-exonic
CAediting_1022776chr14_105986695_-exonic
CAediting_1022777chr14_105986706_-exonic
CAediting_1022778chr14_105987015_-exonic
CAediting_1022779chr14_105987077_-UTR5
CAediting_1022780chr14_106005152_-exonic
CAediting_1022781chr14_106005159_-exonic
CAediting_1022782chr14_106005177_-exonic
CAediting_1022783chr14_106005180_-exonic
CAediting_1022784chr14_106005208_-exonic
CAediting_1022785chr14_106005217_-exonic
CAediting_1022786chr14_106005227_-exonic
CAediting_1022787chr14_106005240_-exonic
CAediting_1022788chr14_106005291_-exonic
CAediting_1022789chr14_106005323_-exonic
CAediting_1022790chr14_106005354_-exonic
CAediting_1022791chr14_106037905_-exonic
CAediting_1022792chr14_106037909_-exonic
CAediting_1022793chr14_106037927_-exonic
CAediting_1022794chr14_106037929_-exonic
CAediting_1022795chr14_106037954_-exonic
CAediting_1022796chr14_106037956_-exonic
CAediting_1022797chr14_106037985_-exonic
CAediting_1022798chr14_106037986_-exonic
CAediting_1022799chr14_106037989_-exonic
CAediting_1022800chr14_106037992_-exonic
CAediting_1022801chr14_106037995_-exonic
CAediting_1022802chr14_106038014_-exonic
CAediting_1022803chr14_106038027_-exonic
CAediting_1022804chr14_106038036_-exonic
CAediting_1022805chr14_106038042_-exonic
CAediting_1022806chr14_106038060_-exonic
CAediting_1022807chr14_106038070_-exonic
CAediting_1022808chr14_106038074_-exonic
CAediting_1022809chr14_106038088_-exonic
CAediting_1022810chr14_106038112_-exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1022674chr14_105796074_-SINEAluAluSx
CAediting_1022676chr14_105858401_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022677chr14_105858880_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022678chr14_105859095_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022679chr14_105859100_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022680chr14_105859110_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022681chr14_105859117_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022682chr14_105859141_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022683chr14_105859296_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022684chr14_105859382_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022685chr14_105859536_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022686chr14_105859558_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022687chr14_105859566_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022688chr14_105859721_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022689chr14_105859726_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022690chr14_105859743_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022691chr14_105859787_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022692chr14_105859807_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022693chr14_105859813_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022694chr14_105859817_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022695chr14_105859818_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022696chr14_105860291_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022697chr14_105860309_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022698chr14_105860325_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022699chr14_105860340_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022700chr14_105860350_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022701chr14_105860355_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022702chr14_105860365_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022703chr14_105860385_-Simple_repeatSimple_repeat(CCAGC)n
CAediting_1022767chr14_105986121_-SINEAluAluSx1
CAediting_1022768chr14_105986131_-SINEAluAluSx1

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RNA A-to-I editing events in the alternative splicing sites for IGHG3

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000211897.6.IGHG3.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000211897.6.IGHG3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for IGHG3

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for IGHG3

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for IGHG3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_580943chr7_100356700_+ENSG00000211897.6ENST00000390551hsa-miR-6840-3p1057691501057691567mer-m8105769149105769171159-32.3
CAediting_1524209chrX_134546392_-ENSG00000211897.6ENST00000390551hsa-miR-503-5p1057691161057691227mer-m8105769115105769137140-15

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for IGHG3

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for IGHG3

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
COADCAediting_1022734chr14_105863223_-....0.04968978124424810.166206595039105
LAMLCAediting_1022734chr14_105863223_-..0.03725082195992060.260988102959745..
SKCMCAediting_1022734chr14_105863223_-0.04721958552463270.208603047384736....
BRCACAediting_1022741chr14_105864634_-0.006985780750921620.27085269020044....
HNSCCAediting_1022741chr14_105864634_-0.01202591522623350.339483375454819....
LUADCAediting_1022762chr14_105939962_-..0.03870372319689450.265416628374762..
HNSCCAediting_1022786chr14_106005227_-..0.01409817424123580.318040601757706..
LUADCAediting_1022788chr14_106005291_-0.0338725049971270.21456283793509....
COADCAediting_1022788chr14_106005291_-..0.04643107542737890.2441934236303420.0236042524450130.276323814010831
LUSCCAediting_1022788chr14_106005291_-....0.009405796128297830.272353170908162
BRCACAediting_1022809chr14_106038088_-0.04866845544656110.20502905349071....

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Relation with cancer stages for IGHG3

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_1022734chr14_105863223_-0.0120372570939630.254054120891737

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Relation with survival for IGHG3

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LUSCCAediting_1022786chr14_106005227_-0.04519882821083540.003159010.0125468

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RelatedDrugs for IGHG3

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for IGHG3

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource