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Editing gene: LINC00265 (CAeditome ID:349114)

Gene summary for LINC00265

Gene summary

Gene information	Gene symbol	LINC00265
	Gene ID	349114
	Gene name	long intergenic non-protein coding RNA 265
	Synonyms	NCRNA00265
	Cytomap	7p14.1
	Type of gene	ncRNA
	Description	NCRNA00265-1
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for LINC00265

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000188185.10

RNA A-to-I editing events in Cancer.

CAediting_538142(39737622, +), CAediting_538143(39738429, +), CAediting_538144(39738888, +), CAediting_538145(39740632, +), CAediting_538146(39741261, +), CAediting_538147(39741262, +), CAediting_538148(39741370, +), CAediting_538149(39751987, +), CAediting_538150(39767934, +), CAediting_538151(39774354, +), CAediting_538152(39774359, +), CAediting_538153(39779272, +), CAediting_538154(39779275, +), CAediting_538155(39779307, +), CAediting_538156(39779331, +), CAediting_538157(39779345, +), CAediting_538158(39779361, +), CAediting_538159(39780513, +), CAediting_538160(39780575, +), CAediting_538161(39780581, +), CAediting_538162(39780594, +), CAediting_538163(39780607, +), CAediting_538164(39780617, +), CAediting_538165(39780621, +), CAediting_538166(39780623, +), CAediting_538167(39781262, +), CAediting_538168(39781270, +), CAediting_538169(39781283, +), CAediting_538170(39781288, +), CAediting_538171(39781295, +), CAediting_538172(39781302, +), CAediting_538173(39781309, +), CAediting_538174(39781312, +), CAediting_538175(39781326, +), CAediting_538176(39781335, +), CAediting_538177(39781338, +), CAediting_538178(39781348, +), CAediting_538179(39781376, +), CAediting_538180(39781420, +), CAediting_538181(39781472, +), CAediting_538182(39784345, +), CAediting_538183(39786183, +), CAediting_538184(39788517, +), CAediting_538185(39788522, +), CAediting_538186(39788538, +), CAediting_538187(39788563, +), CAediting_538188(39788588, +), CAediting_538189(39788591, +), CAediting_538190(39789372, +), CAediting_538191(39789373, +), CAediting_538192(39789388, +), CAediting_538193(39789397, +), CAediting_538194(39789442, +), CAediting_538195(39789448, +), CAediting_538196(39789455, +), CAediting_538197(39789466, +), CAediting_538198(39789757, +), CAediting_538199(39789927, +), CAediting_538200(39790664, +), CAediting_538201(39790665, +), CAediting_538202(39790776, +), CAediting_538203(39792013, +), CAediting_538204(39792880, +), CAediting_538205(39792887, +), CAediting_538206(39792897, +), CAediting_538207(39792898, +), CAediting_538208(39792925, +), CAediting_538209(39792928, +), CAediting_538210(39792932, +), CAediting_538211(39792933, +), CAediting_538212(39792936, +), CAediting_538213(39792937, +), CAediting_538214(39792962, +), CAediting_538215(39792969, +), CAediting_538216(39793004, +), CAediting_538217(39793042, +),

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RNA editing positional annotations for LINC00265 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_538142	chr7_39737622_+	ncRNA_intronic
CAediting_538143	chr7_39738429_+	ncRNA_intronic
CAediting_538144	chr7_39738888_+	ncRNA_intronic
CAediting_538145	chr7_39740632_+	ncRNA_intronic
CAediting_538146	chr7_39741261_+	ncRNA_intronic
CAediting_538147	chr7_39741262_+	ncRNA_intronic
CAediting_538148	chr7_39741370_+	ncRNA_intronic
CAediting_538149	chr7_39751987_+	ncRNA_intronic
CAediting_538150	chr7_39767934_+	ncRNA_intronic
CAediting_538151	chr7_39774354_+	ncRNA_intronic
CAediting_538152	chr7_39774359_+	ncRNA_intronic
CAediting_538153	chr7_39779272_+	ncRNA_exonic
CAediting_538154	chr7_39779275_+	ncRNA_exonic
CAediting_538155	chr7_39779307_+	ncRNA_exonic
CAediting_538156	chr7_39779331_+	ncRNA_exonic
CAediting_538157	chr7_39779345_+	ncRNA_exonic
CAediting_538158	chr7_39779361_+	ncRNA_exonic
CAediting_538159	chr7_39780513_+	ncRNA_exonic
CAediting_538160	chr7_39780575_+	ncRNA_exonic
CAediting_538161	chr7_39780581_+	ncRNA_exonic
CAediting_538162	chr7_39780594_+	ncRNA_exonic
CAediting_538163	chr7_39780607_+	ncRNA_exonic
CAediting_538164	chr7_39780617_+	ncRNA_exonic
CAediting_538165	chr7_39780621_+	ncRNA_exonic
CAediting_538166	chr7_39780623_+	ncRNA_exonic
CAediting_538167	chr7_39781262_+	ncRNA_exonic
CAediting_538168	chr7_39781270_+	ncRNA_exonic
CAediting_538169	chr7_39781283_+	ncRNA_exonic
CAediting_538170	chr7_39781288_+	ncRNA_exonic
CAediting_538171	chr7_39781295_+	ncRNA_exonic
CAediting_538172	chr7_39781302_+	ncRNA_exonic
CAediting_538173	chr7_39781309_+	ncRNA_exonic
CAediting_538174	chr7_39781312_+	ncRNA_exonic
CAediting_538175	chr7_39781326_+	ncRNA_exonic
CAediting_538176	chr7_39781335_+	ncRNA_exonic
CAediting_538177	chr7_39781338_+	ncRNA_exonic
CAediting_538178	chr7_39781348_+	ncRNA_exonic
CAediting_538179	chr7_39781376_+	ncRNA_intronic
CAediting_538180	chr7_39781420_+	ncRNA_intronic
CAediting_538181	chr7_39781472_+	ncRNA_intronic
CAediting_538182	chr7_39784345_+	ncRNA_intronic
CAediting_538183	chr7_39786183_+	ncRNA_intronic
CAediting_538184	chr7_39788517_+	ncRNA_exonic
CAediting_538185	chr7_39788522_+	ncRNA_exonic
CAediting_538186	chr7_39788538_+	ncRNA_exonic
CAediting_538187	chr7_39788563_+	ncRNA_exonic
CAediting_538188	chr7_39788588_+	ncRNA_exonic
CAediting_538189	chr7_39788591_+	ncRNA_exonic
CAediting_538190	chr7_39789372_+	ncRNA_exonic
CAediting_538191	chr7_39789373_+	ncRNA_exonic
CAediting_538192	chr7_39789388_+	ncRNA_exonic
CAediting_538193	chr7_39789397_+	ncRNA_exonic
CAediting_538194	chr7_39789442_+	ncRNA_exonic
CAediting_538195	chr7_39789448_+	ncRNA_exonic
CAediting_538196	chr7_39789455_+	ncRNA_exonic
CAediting_538197	chr7_39789466_+	ncRNA_exonic
CAediting_538198	chr7_39789757_+	ncRNA_intronic
CAediting_538199	chr7_39789927_+	ncRNA_intronic
CAediting_538200	chr7_39790664_+	ncRNA_intronic
CAediting_538201	chr7_39790665_+	ncRNA_intronic
CAediting_538202	chr7_39790776_+	ncRNA_intronic
CAediting_538203	chr7_39792013_+	ncRNA_exonic
CAediting_538204	chr7_39792880_+	ncRNA_exonic
CAediting_538205	chr7_39792887_+	ncRNA_exonic
CAediting_538206	chr7_39792897_+	ncRNA_exonic
CAediting_538207	chr7_39792898_+	ncRNA_exonic
CAediting_538208	chr7_39792925_+	ncRNA_exonic
CAediting_538209	chr7_39792928_+	ncRNA_exonic
CAediting_538210	chr7_39792932_+	ncRNA_exonic
CAediting_538211	chr7_39792933_+	ncRNA_exonic
CAediting_538212	chr7_39792936_+	ncRNA_exonic
CAediting_538213	chr7_39792937_+	ncRNA_exonic
CAediting_538214	chr7_39792962_+	ncRNA_exonic
CAediting_538215	chr7_39792969_+	ncRNA_exonic
CAediting_538216	chr7_39793004_+	ncRNA_exonic
CAediting_538217	chr7_39793042_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_538142	chr7_39737622_+	SINE	Alu	AluSz
CAediting_538143	chr7_39738429_+	SINE	Alu	AluSz
CAediting_538144	chr7_39738888_+	SINE	Alu	AluSg
CAediting_538145	chr7_39740632_+	SINE	Alu	AluJb
CAediting_538146	chr7_39741261_+	SINE	Alu	AluJr
CAediting_538147	chr7_39741262_+	SINE	Alu	AluJr
CAediting_538148	chr7_39741370_+	SINE	Alu	AluJr
CAediting_538149	chr7_39751987_+	SINE	Alu	AluSx1
CAediting_538150	chr7_39767934_+	SINE	Alu	AluJb
CAediting_538151	chr7_39774354_+	SINE	Alu	AluJr
CAediting_538152	chr7_39774359_+	SINE	Alu	AluJr
CAediting_538153	chr7_39779272_+	SINE	Alu	AluJr
CAediting_538154	chr7_39779275_+	SINE	Alu	AluJr
CAediting_538155	chr7_39779307_+	SINE	Alu	AluJr
CAediting_538156	chr7_39779331_+	SINE	Alu	AluJr
CAediting_538157	chr7_39779345_+	SINE	Alu	AluJr
CAediting_538158	chr7_39779361_+	SINE	Alu	AluJr
CAediting_538159	chr7_39780513_+	SINE	Alu	AluJb
CAediting_538160	chr7_39780575_+	SINE	Alu	AluJb
CAediting_538161	chr7_39780581_+	SINE	Alu	AluJb
CAediting_538162	chr7_39780594_+	SINE	Alu	AluJb
CAediting_538163	chr7_39780607_+	SINE	Alu	AluJb
CAediting_538164	chr7_39780617_+	SINE	Alu	AluJb
CAediting_538165	chr7_39780621_+	SINE	Alu	AluJb
CAediting_538166	chr7_39780623_+	SINE	Alu	AluJb
CAediting_538167	chr7_39781262_+	SINE	Alu	AluJb
CAediting_538168	chr7_39781270_+	SINE	Alu	AluJb
CAediting_538169	chr7_39781283_+	SINE	Alu	AluJb
CAediting_538170	chr7_39781288_+	SINE	Alu	AluJb
CAediting_538171	chr7_39781295_+	SINE	Alu	AluJb
CAediting_538172	chr7_39781302_+	SINE	Alu	AluJb
CAediting_538173	chr7_39781309_+	SINE	Alu	AluJb
CAediting_538174	chr7_39781312_+	SINE	Alu	AluJb
CAediting_538175	chr7_39781326_+	SINE	Alu	AluJb
CAediting_538176	chr7_39781335_+	SINE	Alu	AluJb
CAediting_538177	chr7_39781338_+	SINE	Alu	AluJb
CAediting_538178	chr7_39781348_+	SINE	Alu	AluJb
CAediting_538179	chr7_39781376_+	SINE	Alu	AluJb
CAediting_538180	chr7_39781420_+	SINE	Alu	AluJb
CAediting_538181	chr7_39781472_+	SINE	Alu	AluJb
CAediting_538182	chr7_39784345_+	SINE	Alu	AluJb
CAediting_538183	chr7_39786183_+	SINE	Alu	AluSq2
CAediting_538184	chr7_39788517_+	SINE	Alu	AluJr
CAediting_538185	chr7_39788522_+	SINE	Alu	AluJr
CAediting_538186	chr7_39788538_+	SINE	Alu	AluJr
CAediting_538187	chr7_39788563_+	SINE	Alu	AluJr
CAediting_538188	chr7_39788588_+	SINE	Alu	AluJr
CAediting_538189	chr7_39788591_+	SINE	Alu	AluJr
CAediting_538190	chr7_39789372_+	SINE	Alu	AluJb
CAediting_538191	chr7_39789373_+	SINE	Alu	AluJb
CAediting_538192	chr7_39789388_+	SINE	Alu	AluJb
CAediting_538193	chr7_39789397_+	SINE	Alu	AluJb
CAediting_538194	chr7_39789442_+	SINE	Alu	AluJb
CAediting_538195	chr7_39789448_+	SINE	Alu	AluJb
CAediting_538196	chr7_39789455_+	SINE	Alu	AluJb
CAediting_538197	chr7_39789466_+	SINE	Alu	AluJb
CAediting_538198	chr7_39789757_+	SINE	Alu	AluJr
CAediting_538199	chr7_39789927_+	SINE	Alu	AluJr
CAediting_538200	chr7_39790664_+	SINE	Alu	AluJr
CAediting_538201	chr7_39790665_+	SINE	Alu	AluJr
CAediting_538202	chr7_39790776_+	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for LINC00265

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000188185.10.LINC00265.

Correlation between RNA A-to-I editing and PSI for ENSG00000188185.10.LINC00265.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC00265

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LINC00265

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LINC00265

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_538206	chr7_39792897_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-508-5p	39792894	39792900	7mer-m8	39792878	39792901	146	-17.24
CAediting_538211	chr7_39792933_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-24-1-5p	39792929	39792936	8mer-1a	39792916	39792936	148	-20.4
CAediting_538211	chr7_39792933_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-24-2-5p	39792929	39792936	8mer-1a	39792916	39792936	148	-20.83
CAediting_538211	chr7_39792933_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4774-3p	39792931	39792937	7mer-m8	39792918	39792938	148	-11.74
CAediting_538212	chr7_39792936_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-99a-3p	39792935	39792941	7mer-m8	39792921	39792942	160	-24.36
CAediting_538212	chr7_39792936_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-99b-3p	39792935	39792941	7mer-m8	39792918	39792942	152	-20.24
CAediting_538213	chr7_39792937_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-596	39792934	39792940	7mer-m8	39792921	39792941	143	-21.47
CAediting_538214	chr7_39792962_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4537	39792961	39792966	6mer	39792945	39792967	143	-26.46
CAediting_538214	chr7_39792962_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-7112-5p	39792956	39792962	7mer-m8	39792941	39792963	151	-23.05
CAediting_538215	chr7_39792969_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6771-5p	39792964	39792970	7mer-m8	39792947	39792971	159	-27.9
CAediting_538216	chr7_39793004_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3064-5p	39792998	39793004	7mer-m8	39792986	39793005	141	-17.73
CAediting_538216	chr7_39793004_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3085-3p	39792998	39793004	7mer-m8	39792985	39793005	140	-14.65
CAediting_538216	chr7_39793004_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6504-5p	39792998	39793004	7mer-m8	39792985	39793005	140	-16.75
CAediting_538154	chr7_39779275_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4281	39779274	39779280	7mer-m8	39771085	39779281	140	-19.02
CAediting_538156	chr7_39779331_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-15a-3p	39779330	39779335	6mer	39779315	39779336	145	-17.34
CAediting_538156	chr7_39779331_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4717-5p	39779329	39779335	7mer-m8	39779315	39779336	167	-23.44
CAediting_538157	chr7_39779345_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1247-3p	39779341	39779347	7mer-m8	39779326	39779348	152	-22.72
CAediting_538157	chr7_39779345_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3940-3p	39779343	39779349	7mer-m8	39779327	39779350	142	-14.55
CAediting_538158	chr7_39779361_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4763-3p	39779358	39779364	7mer-1a	39779338	39779364	148	-27.59
CAediting_538158	chr7_39779361_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-7150	39779358	39779364	7mer-m8	39779348	39779365	141	-15.73
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3180	39780592	39780599	8mer-1a	39780580	39780599	150	-25.17
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3180-3p	39780592	39780599	8mer-1a	39780575	39780599	154	-34.78
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3196	39780592	39780599	8mer-1a	39780582	39780599	160	-27.19
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6816-5p	39780592	39780599	8mer-1a	39780580	39780599	165	-37.03
CAediting_538163	chr7_39780607_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6771-5p	39780602	39780608	7mer-m8	39780585	39780609	147	-28.96
CAediting_538164	chr7_39780617_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-7977	39780612	39780618	7mer-m8	39780602	39780619	142	-12.93
CAediting_538167	chr7_39781262_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3130-3p	39781260	39781265	6mer	39781246	39781266	143	-22.83
CAediting_538167	chr7_39781262_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4793-3p	39781259	39781265	7mer-m8	39781244	39781266	161	-22.15
CAediting_538171	chr7_39781295_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1910-3p	39781292	39781298	7mer-m8	39781279	39781299	157	-17.15
CAediting_538171	chr7_39781295_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-2467-3p	39781290	39781296	7mer-m8	39781275	39781297	153	-19.92
CAediting_538171	chr7_39781295_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4514	39781293	39781299	7mer-m8	39781282	39781300	147	-19.71
CAediting_538171	chr7_39781295_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4692	39781293	39781299	7mer-m8	39781278	39781300	147	-19.59
CAediting_538171	chr7_39781295_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6511a-5p	39781292	39781298	7mer-m8	39781277	39781299	155	-27
CAediting_538172	chr7_39781302_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3940-3p	39781300	39781306	7mer-m8	39781286	39781307	140	-16.05
CAediting_538173	chr7_39781309_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1199-5p	39781303	39781309	7mer-m8	39781291	39781310	147	-23.74
CAediting_538173	chr7_39781309_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6751-3p	39781303	39781309	7mer-m8	39781290	39781310	145	-13.99
CAediting_538175	chr7_39781326_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-224-5p	39781320	39781326	7mer-m8	39781304	39781327	151	-14.88
CAediting_538175	chr7_39781326_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3691-3p	39781321	39781327	7mer-m8	39781307	39781328	144	-11.39
CAediting_538175	chr7_39781326_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4480	39781322	39781328	7mer-m8	39781306	39781329	161	-16.22
CAediting_538184	chr7_39788517_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4793-3p	39788514	39788520	7mer-m8	39788499	39788521	154	-21.63
CAediting_538184	chr7_39788517_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6807-3p	39788516	39788522	7mer-1a	39788500	39788522	156	-24.9
CAediting_538184	chr7_39788517_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-7703	39788513	39788519	7mer-m8	39788498	39788520	158	-21.97
CAediting_538184	chr7_39788517_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-4793-3p	39788514	39788520	7mer-m8	39788499	39788521	154	-21.63
CAediting_538184	chr7_39788517_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-6807-3p	39788516	39788522	7mer-1a	39788500	39788522	156	-24.9
CAediting_538184	chr7_39788517_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-7703	39788513	39788519	7mer-m8	39788498	39788520	158	-21.97
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-29a-3p	39788521	39788528	8mer-1a	39788508	39788528	157	-20.22
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-29b-3p	39788521	39788528	8mer-1a	39788507	39788528	157	-19.28
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-29c-3p	39788521	39788528	8mer-1a	39788508	39788528	153	-18
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-767-5p	39788521	39788526	6mer	39788506	39788527	142	-18.28
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-29a-3p	39788521	39788528	8mer-1a	39788508	39788528	157	-20.22
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-29b-3p	39788521	39788528	8mer-1a	39788507	39788528	157	-19.28
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-29c-3p	39788521	39788528	8mer-1a	39788508	39788528	153	-18
CAediting_538185	chr7_39788522_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-767-5p	39788521	39788526	6mer	39788506	39788527	142	-18.28
CAediting_538188	chr7_39788588_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6840-3p	39788583	39788589	7mer-m8	39788566	39788590	150	-23.42
CAediting_538188	chr7_39788588_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-6840-3p	39788583	39788589	7mer-m8	39788566	39788590	150	-23.42
CAediting_538190	chr7_39789372_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3917	39789368	39789374	7mer-m8	39789358	39789375	151	-25.62
CAediting_538190	chr7_39789372_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-3917	39789368	39789374	7mer-m8	39789358	39789375	151	-25.62
CAediting_538191	chr7_39789373_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4308	39789369	39789375	7mer-m8	39789359	39789376	140	-13.82
CAediting_538191	chr7_39789373_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4638-3p	39789367	39789373	7mer-m8	39788603	39789374	143	-22.34
CAediting_538191	chr7_39789373_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6779-3p	39789371	39789377	7mer-m8	39789358	39789378	140	-12.3
CAediting_538191	chr7_39789373_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-4308	39789369	39789375	7mer-m8	39789359	39789376	140	-13.82
CAediting_538191	chr7_39789373_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-4638-3p	39789367	39789373	7mer-m8	39788603	39789374	143	-22.34
CAediting_538191	chr7_39789373_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-6779-3p	39789371	39789377	7mer-m8	39789358	39789378	140	-12.3
CAediting_538192	chr7_39789388_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-29a-3p	39789387	39789394	8mer-1a	39789374	39789394	151	-21.12
CAediting_538192	chr7_39789388_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-29b-3p	39789387	39789394	8mer-1a	39789372	39789394	156	-21.8
CAediting_538192	chr7_39789388_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-29c-3p	39789387	39789394	8mer-1a	39789373	39789394	152	-21.67
CAediting_538192	chr7_39789388_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-29a-3p	39789387	39789394	8mer-1a	39789374	39789394	151	-21.12
CAediting_538192	chr7_39789388_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-29b-3p	39789387	39789394	8mer-1a	39789372	39789394	156	-21.8
CAediting_538192	chr7_39789388_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-29c-3p	39789387	39789394	8mer-1a	39789373	39789394	152	-21.67
CAediting_538195	chr7_39789448_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3929	39789445	39789451	7mer-m8	39789430	39789452	156	-19.43
CAediting_538195	chr7_39789448_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4478	39789445	39789451	7mer-m8	39789436	39789452	155	-27.09
CAediting_538195	chr7_39789448_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-485-5p	39789446	39789452	7mer-m8	39789431	39789453	149	-16.96
CAediting_538195	chr7_39789448_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6884-5p	39789446	39789452	7mer-m8	39789433	39789453	165	-23.42
CAediting_538196	chr7_39789455_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3186-3p	39789453	39789459	7mer-m8	39789435	39789460	150	-26.49
CAediting_538205	chr7_39792887_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3661	39792884	39792890	7mer-m8	39792869	39792891	159	-25.94
CAediting_538205	chr7_39792887_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-631	39792884	39792890	7mer-m8	39792868	39792891	152	-22.43
CAediting_538205	chr7_39792887_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-7851-3p	39792883	39792889	7mer-m8	39792868	39792890	155	-27.53
CAediting_538205	chr7_39792887_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-939-3p	39792882	39792888	7mer-m8	39792869	39792889	150	-19.84
CAediting_538207	chr7_39792898_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3664-3p	39792892	39792898	7mer-m8	39792878	39792899	140	-15.97
CAediting_538210	chr7_39792932_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1178-3p	39792930	39792937	8mer-1a	39792918	39792937	148	-15.06
CAediting_538210	chr7_39792932_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6500-3p	39792927	39792933	7mer-1a	39792913	39792933	151	-21.94
CAediting_538155	chr7_39779307_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6716-3p	39779302	39779308	7mer-m8	39779290	39779309	153	-21.65
CAediting_538177	chr7_39781338_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4691-3p	39781336	39781342	7mer-m8	39781316	39781343	146	-24.32
CAediting_538153	chr7_39779272_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-146a-3p	39771087	39779273	8mer-1a	39771072	39779273	151	-17.86
CAediting_538153	chr7_39779272_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3921	39771088	39779273	7mer-1a	39771071	39779273	155	-24.1
CAediting_538153	chr7_39779272_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4421	39779271	39779278	8mer-1a	39771078	39779278	158	-18.24
CAediting_538153	chr7_39779272_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-5699-3p	39779271	39779278	8mer-1a	39771078	39779278	146	-16.73
CAediting_538153	chr7_39779272_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-593-3p	39771089	39779275	8mer-1a	39771078	39779275	140	-13.61
CAediting_538153	chr7_39779272_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6818-3p	39771090	39779275	7mer-m8	39771076	39779276	140	-11.71
CAediting_538166	chr7_39780623_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-100-5p	39780620	39781236	7mer-m8	39780604	39781237	163	-24.74
CAediting_538166	chr7_39780623_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-99a-5p	39780620	39781236	7mer-m8	39780604	39781237	162	-23.62
CAediting_538166	chr7_39780623_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-99b-5p	39780620	39781236	7mer-m8	39780604	39781237	155	-20.61
CAediting_538176	chr7_39781335_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1247-3p	39781330	39781336	7mer-m8	39781315	39781337	156	-24.8
CAediting_538189	chr7_39788591_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4691-3p	39788589	39788595	7mer-m8	39788570	39788596	144	-23.95
CAediting_538189	chr7_39788591_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-4691-3p	39788589	39788595	7mer-m8	39788570	39788596	144	-23.95
CAediting_538194	chr7_39789442_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-483-5p	39789439	39789445	7mer-m8	39789425	39789446	160	-25.66

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_538212	chr7_39792936_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-100-3p	39792935	39792941	7mer-m8	39792919	39792942	147	-9.73
CAediting_538213	chr7_39792937_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-100-3p	39792935	39792941	7mer-m8	39792919	39792942	147	-9.73
CAediting_538204	chr7_39792880_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1205	39792876	39792881	6mer	39792863	39792882	143	-24.67
CAediting_538205	chr7_39792887_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-12126	39792883	39792889	7mer-m8	39792866	39792890	145	-18.46
CAediting_538163	chr7_39780607_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-12126	39780604	39780611	8mer-1a	39780588	39780611	142	-13.13
CAediting_538196	chr7_39789455_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1233-5p	39789450	39789456	7mer-m8	39789436	39789457	145	-20.74
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1233-5p	39780589	39780595	7mer-m8	39780575	39780596	145	-23.37
CAediting_538157	chr7_39779345_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1273h-5p	39779340	39779345	6mer	39779326	39779346	143	-30.46
CAediting_538214	chr7_39792962_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1285-3p	39792957	39792963	7mer-m8	39792940	39792964	149	-17.48
CAediting_538161	chr7_39780581_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1304-5p	39780576	39780582	7mer-m8	39780562	39780583	145	-14.87
CAediting_538170	chr7_39781288_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-17-3p	39781283	39781289	7mer-m8	39781268	39781290	155	-19.27
CAediting_538155	chr7_39779307_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-181a-2-3p	39779305	39779311	7mer-m8	39779286	39779312	148	-20.64
CAediting_538160	chr7_39780575_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-204-3p	39780570	39780576	7mer-m8	39780557	39780577	151	-21.74
CAediting_538204	chr7_39792880_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-2861	39792879	39792886	8mer-1a	39792869	39792886	151	-26.67
CAediting_538208	chr7_39792925_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-30b-3p	39792919	39792925	7mer-m8	39792905	39792926	147	-22.09
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-30b-3p	39780588	39780594	7mer-m8	39780574	39780595	140	-15.41
CAediting_538204	chr7_39792880_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3158-5p	39792875	39792881	7mer-m8	39792864	39792882	146	-23.89
CAediting_538169	chr7_39781283_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3174	39781279	39781285	7mer-m8	39781265	39781286	153	-19.54
CAediting_538186	chr7_39788538_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3174	39788535	39788540	6mer	39788519	39788541	143	-18.42
CAediting_538208	chr7_39792925_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3192-5p	39792920	39792926	7mer-m8	39792906	39792927	151	-22.54
CAediting_538160	chr7_39780575_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3192-5p	39780571	39780576	6mer	39780552	39780577	151	-25.32
CAediting_538208	chr7_39792925_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3689a-3p	39792919	39792925	7mer-m8	39792905	39792926	144	-26.28
CAediting_538208	chr7_39792925_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3689b-3p	39792919	39792925	7mer-m8	39792905	39792926	144	-23.82
CAediting_538208	chr7_39792925_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3689c	39792919	39792925	7mer-m8	39792905	39792926	144	-23.82
CAediting_538195	chr7_39789448_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-377-5p	39789446	39789452	7mer-m8	39789432	39789453	152	-15.06
CAediting_538171	chr7_39781295_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3927-3p	39781292	39781298	7mer-m8	39781273	39781299	141	-17.43
CAediting_538170	chr7_39781288_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3929	39781287	39781292	6mer	39781271	39781293	150	-29.12
CAediting_538175	chr7_39781326_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3975	39781325	39781331	7mer-m8	39781311	39781332	149	-11.81
CAediting_538156	chr7_39779331_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-3975	39779330	39779337	8mer-1a	39779314	39779337	147	-15.01
CAediting_538171	chr7_39781295_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4451	39781291	39781297	7mer-m8	39781281	39781298	149	-17.56
CAediting_538216	chr7_39793004_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4453	39793001	39793007	7mer-m8	39792990	39793008	153	-19.84
CAediting_538214	chr7_39792962_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4487	39792960	39792966	7mer-m8	39792950	39792967	147	-19.45
CAediting_538160	chr7_39780575_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4505	39780572	39780578	7mer-m8	39780562	39780579	140	-20.52
CAediting_538190	chr7_39789372_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4520-2-3p	39789367	39789373	7mer-m8	39788604	39789374	145	-15.25
CAediting_538191	chr7_39789373_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4520-2-3p	39789367	39789373	7mer-m8	39788604	39789374	145	-15.25
CAediting_538158	chr7_39779361_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4536-5p	39779359	39779365	7mer-m8	39779348	39779366	144	-14.92
CAediting_538216	chr7_39793004_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4538	39793001	39793007	7mer-m8	39792987	39793008	148	-20.48
CAediting_538160	chr7_39780575_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4646-5p	39780570	39780576	7mer-m8	39780555	39780577	147	-19.19
CAediting_538168	chr7_39781270_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4715-3p	39781265	39781270	6mer	39781250	39781271	146	-30.96
CAediting_538170	chr7_39781288_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-485-5p	39781287	39781293	7mer-m8	39781274	39781294	153	-19.67
CAediting_538175	chr7_39781326_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-485-5p	39781326	39781331	6mer	39781311	39781332	141	-17.73
CAediting_538160	chr7_39780575_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-485-5p	39780574	39780581	8mer-1a	39780560	39780581	145	-15.73
CAediting_538217	chr7_39793042_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-486-5p	39793040	39793046	7mer-m8	39793027	39793047	155	-23.36
CAediting_538188	chr7_39788588_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-510-5p	39788584	39788591	8mer-1a	39788570	39788591	150	-20.39
CAediting_538214	chr7_39792962_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-5189-5p	39792957	39792963	7mer-m8	39792941	39792964	148	-18.32
CAediting_538177	chr7_39781338_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-5690	39781336	39781342	7mer-m8	39781323	39781343	145	-16.75
CAediting_538189	chr7_39788591_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-5690	39788589	39788595	7mer-m8	39788576	39788596	145	-16.91
CAediting_538160	chr7_39780575_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-5787	39780572	39780578	7mer-m8	39780560	39780579	143	-17.87
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-608	39780592	39780599	8mer-1a	39780575	39780599	140	-21.49
CAediting_538205	chr7_39792887_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-635	39792882	39792888	7mer-m8	39792868	39792889	148	-21.68
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6756-5p	39780591	39780597	7mer-m8	39780570	39780598	152	-31.93
CAediting_538205	chr7_39792887_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6774-5p	39792882	39792888	7mer-m8	39792863	39792889	151	-25.49
CAediting_538196	chr7_39789455_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6778-5p	39789450	39789456	7mer-m8	39789435	39789457	155	-26.45
CAediting_538208	chr7_39792925_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6779-5p	39792919	39792925	7mer-m8	39792903	39792926	154	-36.71
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6779-5p	39780588	39780594	7mer-m8	39780572	39780595	150	-27.19
CAediting_538208	chr7_39792925_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6780a-5p	39792919	39792925	7mer-m8	39792904	39792926	153	-26.79
CAediting_538162	chr7_39780594_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6780a-5p	39780588	39780594	7mer-m8	39780573	39780595	141	-21.33
CAediting_538217	chr7_39793042_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6811-3p	39793042	39793047	6mer	39793028	39793048	142	-21.62
CAediting_538157	chr7_39779345_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6852-5p	39779342	39779347	6mer	39779326	39779348	150	-23.65
CAediting_538172	chr7_39781302_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6868-5p	39781297	39781303	7mer-m8	39781280	39781304	144	-19.33
CAediting_538170	chr7_39781288_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6884-5p	39781287	39781293	7mer-m8	39781271	39781294	154	-22.48
CAediting_538175	chr7_39781326_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6884-5p	39781326	39781331	6mer	39781310	39781332	144	-24.85
CAediting_538172	chr7_39781302_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-7150	39781296	39781302	7mer-m8	39781286	39781303	153	-28.05
CAediting_538217	chr7_39793042_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-7151-3p	39793036	39793042	7mer-m8	39793025	39793043	146	-18.75
CAediting_538172	chr7_39781302_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-8073	39781298	39781304	7mer-m8	39781284	39781305	153	-23.6
CAediting_538215	chr7_39792969_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-887-5p	39792964	39792970	7mer-m8	39792951	39792971	146	-14.31
CAediting_538163	chr7_39780607_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-887-5p	39780602	39780608	7mer-m8	39780590	39780609	143	-18.56
CAediting_538215	chr7_39792969_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-92a-1-5p	39792966	39792972	7mer-m8	39792952	39792973	152	-19.03

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000188185.10	ENST00000448955.1	hsa-miR-624-3p	39788495	39788501	7mer-m8	39788482	39788502	140	-14.04
CAediting_748296	chr10_51299626_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-605-3p	39792793	39792799	7mer-m8	39792779	39792800	147	-15.67
CAediting_980496	chr14_31014685_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-624-3p	39788495	39788501	7mer-m8	39788482	39788502	140	-14.04
CAediting_688080	chr9_63819626_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4477b	39792128	39792134	7mer-m8	39792113	39792135	167	-20.57
CAediting_688080	chr9_63819626_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4477b	39792568	39792574	7mer-m8	39792553	39792575	151	-13.55
CAediting_688080	chr9_63819626_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4477b	39792730	39792736	7mer-m8	39792717	39792737	154	-17.1
CAediting_442554	chr5_154685830_+	ENSG00000188185.10	ENST00000448955.1	hsa-miR-1303	39781857	39781863	7mer-m8	39781843	39781864	150	-20.53
CAediting_1054808	chr15_66496985_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4512	39792281	39792287	7mer-m8	39792267	39792288	144	-32.51
CAediting_1054808	chr15_66496985_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4512	39792524	39792530	7mer-m8	39792510	39792531	140	-23.12
CAediting_1054808	chr15_66496985_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4512	39792813	39792820	8mer-1a	39792796	39792820	145	-21.38
CAediting_1054808	chr15_66496985_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4512	39792981	39792987	7mer-m8	39792966	39792988	141	-22.11
CAediting_1054808	chr15_66496985_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4512	39793076	39793082	7mer-m8	39793058	39793083	148	-27.28
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39791931	39791937	7mer-m8	39791921	39791938	159	-21.81
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39791994	39792001	8mer-1a	39791984	39792001	147	-18.9
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792026	39792032	7mer-m8	39792014	39792033	154	-27.26
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792088	39792094	7mer-m8	39792078	39792095	143	-15.78
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792151	39792157	7mer-m8	39792140	39792158	151	-21.46
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792214	39792220	7mer-m8	39792202	39792221	154	-25.46
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792253	39792260	8mer-1a	39792243	39792260	158	-22.27
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792461	39792467	7mer-m8	39792449	39792468	150	-24.51
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792623	39792629	7mer-m8	39792611	39792630	154	-26.75
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792960	39792966	7mer-m8	39792949	39792967	149	-21.17
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39793048	39793054	7mer-m8	39793038	39793055	147	-20.57
CAediting_396018	chr5_1062918_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4635	39792129	39792135	7mer-m8	39792117	39792136	143	-14.72
CAediting_396018	chr5_1062918_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4635	39792569	39792575	7mer-m8	39792552	39792576	145	-18.55
CAediting_396018	chr5_1062918_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4635	39792731	39792737	7mer-m8	39792718	39792738	140	-15.03
CAediting_396018	chr5_1062918_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4635	39780577	39780583	7mer-m8	39780563	39780584	145	-14.78
CAediting_442554	chr5_154685830_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-1303	39781857	39781863	7mer-m8	39781843	39781864	150	-20.53
CAediting_468389	chr6_31355314_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-6891-5p	39792566	39792573	8mer-1a	39792555	39792573	140	-21.3

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-320e	39792852	39792858	7mer-m8	39792840	39792859	151	-20.05
CAediting_1054808	chr15_66496985_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4512	39791959	39791965	7mer-m8	39791945	39791966	140	-17.23
CAediting_396018	chr5_1062918_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-4635	39733656	39733662	7mer-m8	39733643	39733663	154	-16.22
CAediting_1229413	chr17_67471544_+	ENSG00000188185.10	ENST00000340510.7	hsa-miR-548aa	39733678	39733684	7mer-m8	39733660	39733685	151	-12.6
CAediting_524911	chr7_5495852_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-589-3p	39733759	39733765	7mer-m8	39733741	39733766	151	-21.85
CAediting_1351755	chr19_40282625_-	ENSG00000188185.10	ENST00000340510.7	hsa-miR-641	39771006	39771012	7mer-m8	39767655	39771013	149	-13.99

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LINC00265

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000340510.7	lincRNA
ENST00000448955.1	lincRNA

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_538153	ENST00000340510.7	chr7_39779272_+	-1059.40	-1059.00	-1138.50
CAediting_538154	ENST00000340510.7	chr7_39779275_+	-1058.30	-1059.00	-1138.50
CAediting_538155	ENST00000340510.7	chr7_39779307_+	-1058.30	-1059.00	-1138.50
CAediting_538156	ENST00000340510.7	chr7_39779331_+	-1058.70	-1059.00	-1138.50
CAediting_538157	ENST00000340510.7	chr7_39779345_+	-1059.00	-1059.00	-1138.50
CAediting_538158	ENST00000340510.7	chr7_39779361_+	-1062.00	-1059.00	-1138.50
CAediting_538159	ENST00000340510.7	chr7_39780513_+	-1059.30	-1059.00	-1138.50
CAediting_538160	ENST00000340510.7	chr7_39780575_+	-1059.60	-1059.00	-1138.50
CAediting_538161	ENST00000340510.7	chr7_39780581_+	-1060.00	-1059.00	-1138.50
CAediting_538162	ENST00000340510.7	chr7_39780594_+	-1059.00	-1059.00	-1138.50
CAediting_538163	ENST00000340510.7	chr7_39780607_+	-1060.00	-1059.00	-1138.50
CAediting_538164	ENST00000340510.7	chr7_39780617_+	-1063.00	-1059.00	-1138.50
CAediting_538165	ENST00000340510.7	chr7_39780621_+	-1060.10	-1059.00	-1138.50
CAediting_538166	ENST00000340510.7	chr7_39780623_+	-1058.30	-1059.00	-1138.50
CAediting_538167	ENST00000340510.7	chr7_39781262_+	-1063.40	-1059.00	-1138.50
CAediting_538168	ENST00000340510.7	chr7_39781270_+	-1059.10	-1059.00	-1138.50
CAediting_538169	ENST00000340510.7	chr7_39781283_+	-1059.30	-1059.00	-1138.50
CAediting_538170	ENST00000340510.7	chr7_39781288_+	-1058.30	-1059.00	-1138.50
CAediting_538171	ENST00000340510.7	chr7_39781295_+	-1059.00	-1059.00	-1138.50
CAediting_538172	ENST00000340510.7	chr7_39781302_+	-1059.00	-1059.00	-1138.50
CAediting_538173	ENST00000340510.7	chr7_39781309_+	-1060.50	-1059.00	-1138.50
CAediting_538174	ENST00000340510.7	chr7_39781312_+	-1058.30	-1059.00	-1138.50
CAediting_538175	ENST00000340510.7	chr7_39781326_+	-1061.00	-1059.00	-1138.50
CAediting_538176	ENST00000340510.7	chr7_39781335_+	-1065.60	-1059.00	-1138.50
CAediting_538177	ENST00000340510.7	chr7_39781338_+	-1059.60	-1059.00	-1138.50
CAediting_538178	ENST00000340510.7	chr7_39781348_+	-1058.80	-1059.00	-1138.50
CAediting_538184	ENST00000340510.7	chr7_39788517_+	-1062.70	-1059.00	-1138.50
CAediting_538185	ENST00000340510.7	chr7_39788522_+	-1062.20	-1059.00	-1138.50
CAediting_538186	ENST00000340510.7	chr7_39788538_+	-1059.10	-1059.00	-1138.50
CAediting_538187	ENST00000340510.7	chr7_39788563_+	-1061.10	-1059.00	-1138.50
CAediting_538188	ENST00000340510.7	chr7_39788588_+	-1059.90	-1059.00	-1138.50
CAediting_538189	ENST00000340510.7	chr7_39788591_+	-1063.30	-1059.00	-1138.50
CAediting_538190	ENST00000340510.7	chr7_39789372_+	-1061.60	-1059.00	-1138.50
CAediting_538191	ENST00000340510.7	chr7_39789373_+	-1058.80	-1059.00	-1138.50
CAediting_538192	ENST00000340510.7	chr7_39789388_+	-1061.80	-1059.00	-1138.50
CAediting_538193	ENST00000340510.7	chr7_39789397_+	-1059.30	-1059.00	-1138.50
CAediting_538194	ENST00000340510.7	chr7_39789442_+	-1062.20	-1059.00	-1138.50
CAediting_538195	ENST00000340510.7	chr7_39789448_+	-1065.70	-1059.00	-1138.50
CAediting_538196	ENST00000340510.7	chr7_39789455_+	-1059.00	-1059.00	-1138.50
CAediting_538197	ENST00000340510.7	chr7_39789466_+	-1058.10	-1059.00	-1138.50
CAediting_538203	ENST00000340510.7	chr7_39792013_+	-1062.80	-1059.00	-1138.50
CAediting_538204	ENST00000340510.7	chr7_39792880_+	-1059.10	-1059.00	-1138.50
CAediting_538205	ENST00000340510.7	chr7_39792887_+	-1062.80	-1059.00	-1138.50
CAediting_538206	ENST00000340510.7	chr7_39792897_+	-1061.40	-1059.00	-1138.50
CAediting_538207	ENST00000340510.7	chr7_39792898_+	-1064.40	-1059.00	-1138.50
CAediting_538208	ENST00000340510.7	chr7_39792925_+	-1062.50	-1059.00	-1138.50
CAediting_538209	ENST00000340510.7	chr7_39792928_+	-1058.70	-1059.00	-1138.50
CAediting_538210	ENST00000340510.7	chr7_39792932_+	-1062.20	-1059.00	-1138.50
CAediting_538211	ENST00000340510.7	chr7_39792933_+	-1060.80	-1059.00	-1138.50
CAediting_538212	ENST00000340510.7	chr7_39792936_+	-1058.70	-1059.00	-1138.50
CAediting_538213	ENST00000340510.7	chr7_39792937_+	-1059.10	-1059.00	-1138.50
CAediting_538214	ENST00000340510.7	chr7_39792962_+	-1062.40	-1059.00	-1138.50
CAediting_538215	ENST00000340510.7	chr7_39792969_+	-1059.20	-1059.00	-1138.50
CAediting_538216	ENST00000340510.7	chr7_39793004_+	-1061.40	-1059.00	-1138.50
CAediting_538217	ENST00000340510.7	chr7_39793042_+	-1061.30	-1059.00	-1138.50
CAediting_538184	ENST00000448955.1	chr7_39788517_+	-160.20	-155.00	-167.80
CAediting_538185	ENST00000448955.1	chr7_39788522_+	-158.30	-155.00	-167.80
CAediting_538186	ENST00000448955.1	chr7_39788538_+	-156.00	-155.00	-167.80
CAediting_538187	ENST00000448955.1	chr7_39788563_+	-155.90	-155.00	-167.80
CAediting_538188	ENST00000448955.1	chr7_39788588_+	-154.00	-155.00	-167.80
CAediting_538189	ENST00000448955.1	chr7_39788591_+	-157.10	-155.00	-167.80
CAediting_538190	ENST00000448955.1	chr7_39789372_+	-157.60	-155.00	-167.80
CAediting_538191	ENST00000448955.1	chr7_39789373_+	-157.30	-155.00	-167.80
CAediting_538192	ENST00000448955.1	chr7_39789388_+	-157.00	-155.00	-167.80
CAediting_538193	ENST00000448955.1	chr7_39789397_+	-155.50	-155.00	-167.80

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Relation with ADAR for LINC00265

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_538213	chr7_39792937_+	0.0219673493250684	0.144563527743182	0.000988041537996762	0.206691832511028	.	.
BRCA	CAediting_538213	chr7_39792937_+	4.83077442668333e-07	0.316171620894768	.	.	.	.
COAD	CAediting_538213	chr7_39792937_+	0.00275412682387048	0.355088837719446	.	.	.	.
STAD	CAediting_538213	chr7_39792937_+	.	.	4.70199025535867e-05	0.272610707105284	.	.
THCA	CAediting_538213	chr7_39792937_+	0.0234631616357235	0.180783155752683	.	.	.	.

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Relation with cancer stages for LINC00265

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_538213	chr7_39792937_+	0.0355046444621373	0.286791558921848
OV	clinical_stage	CAediting_538213	chr7_39792937_+	0.0480661797796108	-0.152756321856482

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Relation with survival for LINC00265

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_538217	chr7_39793042_+	0.010835988856318	0.0275627	103.852
SARC	CAediting_538213	chr7_39792937_+	0.00250288633577433	0.00074911	281.066

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RelatedDrugs for LINC00265

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LINC00265

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene