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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: IGFBP3 (CAeditome ID:3486) |
Gene summary for IGFBP3 |
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Gene information | Gene symbol | IGFBP3 | Gene ID | 3486 |
Gene name | insulin like growth factor binding protein 3 | |
Synonyms | BP-53|IBP3 | |
Cytomap | 7p12.3 | |
Type of gene | protein-coding | |
Description | insulin-like growth factor-binding protein 3IBP-3IGF-binding protein 3IGFBP-3acid stable subunit of the 140 K IGF complexbinding protein 29binding protein 53growth hormone-dependent binding protein | |
Modification date | 20210524 | |
UniProtAcc | P17936 | |
Context | - 33256984(The downregulation of IGFBP3 by TGF-beta signaling in oral cancer contributes to the osteoclast differentiation) |
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Gene | GO ID | GO term | PubMed ID |
IGFBP3 | GO:0001933 | Insulin-like growth factor-binding protein 3 | 17591901 |
IGFBP3 | GO:0006468 | Insulin-like growth factor-binding protein 3 | 17434920 |
IGFBP3 | GO:0008160 | Insulin-like growth factor-binding protein 3 | 11940579 |
IGFBP3 | GO:0014912 | Insulin-like growth factor-binding protein 3 | 10766744 |
IGFBP3 | GO:0045663 | Insulin-like growth factor-binding protein 3 | 12599210 |
IGFBP3 | GO:0048662 | Insulin-like growth factor-binding protein 3 | 10766744 |
IGFBP3 | GO:0005615 | Insulin-like growth factor-binding protein 3 | 17119061 |
IGFBP3 | GO:0005634 | Insulin-like growth factor-binding protein 3 | 17434920 |
IGFBP3 | GO:0042567 | Insulin-like growth factor-binding protein 3 | 9497324 |
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RNA A-to-I events for IGFBP3 |
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CAediting_543188(45915737, -), CAediting_543189(45915750, -), CAediting_543190(45915760, -), CAediting_543191(45915778, -), CAediting_543192(45915780, -), CAediting_543193(45915787, -), CAediting_543194(45915811, -), CAediting_543195(45915815, -), CAediting_543196(45915838, -), CAediting_543197(45915839, -), CAediting_543198(45915849, -), CAediting_543199(45915873, -), CAediting_543200(45915937, -), CAediting_543201(45915951, -), CAediting_543202(45915981, -), CAediting_543203(45915986, -), CAediting_543204(45915987, -), CAediting_543205(45915991, -), CAediting_543206(45915992, -), CAediting_543207(45916035, -), CAediting_543208(45916046, -), CAediting_543209(45916047, -), CAediting_543210(45916048, -), CAediting_543211(45916055, -), CAediting_543212(45916057, -), CAediting_543213(45916058, -), |
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RNA editing positional annotations for IGFBP3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_543188 | chr7_45915737_- | intronic |
CAediting_543189 | chr7_45915750_- | intronic |
CAediting_543190 | chr7_45915760_- | intronic |
CAediting_543191 | chr7_45915778_- | intronic |
CAediting_543192 | chr7_45915780_- | intronic |
CAediting_543193 | chr7_45915787_- | intronic |
CAediting_543194 | chr7_45915811_- | intronic |
CAediting_543195 | chr7_45915815_- | intronic |
CAediting_543196 | chr7_45915838_- | intronic |
CAediting_543197 | chr7_45915839_- | intronic |
CAediting_543198 | chr7_45915849_- | intronic |
CAediting_543199 | chr7_45915873_- | intronic |
CAediting_543200 | chr7_45915937_- | intronic |
CAediting_543201 | chr7_45915951_- | intronic |
CAediting_543202 | chr7_45915981_- | intronic |
CAediting_543203 | chr7_45915986_- | intronic |
CAediting_543204 | chr7_45915987_- | intronic |
CAediting_543205 | chr7_45915991_- | intronic |
CAediting_543206 | chr7_45915992_- | intronic |
CAediting_543207 | chr7_45916035_- | intronic |
CAediting_543208 | chr7_45916046_- | intronic |
CAediting_543209 | chr7_45916047_- | intronic |
CAediting_543210 | chr7_45916048_- | intronic |
CAediting_543211 | chr7_45916055_- | intronic |
CAediting_543212 | chr7_45916057_- | intronic |
CAediting_543213 | chr7_45916058_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for IGFBP3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for IGFBP3 |
![]() * The grey color means N/A. |
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KIRC.CAediting_543208.ENSG00000146674.IGFBP3.png ![]() |
KIRC.CAediting_543209.ENSG00000146674.IGFBP3.png ![]() |
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Protein coding region RNA A-to-I editings for IGFBP3 |
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The effects of the RNA editing to the miRNA binding sites for IGFBP3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229415 | chr17_67471547_+ | ENSG00000146674.13 | ENST00000381086 | hsa-miR-548aa | 45913115 | 45913121 | 7mer-m8 | 45913114 | 45913138 | 144 | -16.27 |
CAediting_1160181 | chr17_7017644_- | ENSG00000146674.13 | ENST00000381086 | hsa-miR-195-3p | 45912726 | 45912732 | 7mer-m8 | 45912725 | 45912746 | 147 | -10.1 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000146674.13 | ENST00000613132 | hsa-miR-548aa | 45913115 | 45913121 | 7mer-m8 | 45913114 | 45913138 | 144 | -16.27 |
CAediting_1160181 | chr17_7017644_- | ENSG00000146674.13 | ENST00000613132 | hsa-miR-195-3p | 45912726 | 45912732 | 7mer-m8 | 45912725 | 45912746 | 147 | -10.1 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000146674.13 | ENST00000275521 | hsa-miR-548aa | 45913115 | 45913121 | 7mer-m8 | 45913114 | 45913138 | 144 | -16.27 |
CAediting_1160181 | chr17_7017644_- | ENSG00000146674.13 | ENST00000275521 | hsa-miR-195-3p | 45912726 | 45912732 | 7mer-m8 | 45912725 | 45912746 | 147 | -10.1 |
CAediting_573001 | chr7_92204086_- | ENSG00000146674.13 | ENST00000428530 | hsa-miR-1285-5p | 45914377 | 45914384 | 8mer-1a | 45914377 | 45914397 | 147 | -11.3 |
CAediting_468389 | chr6_31355314_- | ENSG00000146674.13 | ENST00000381086 | hsa-miR-6891-5p | 45913166 | 45913172 | 7mer-m8 | 45913165 | 45913183 | 145 | -22.34 |
CAediting_468389 | chr6_31355314_- | ENSG00000146674.13 | ENST00000613132 | hsa-miR-6891-5p | 45913166 | 45913172 | 7mer-m8 | 45913165 | 45913183 | 145 | -22.34 |
CAediting_468389 | chr6_31355314_- | ENSG00000146674.13 | ENST00000275521 | hsa-miR-6891-5p | 45913166 | 45913172 | 7mer-m8 | 45913165 | 45913183 | 145 | -22.34 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_468389 | chr6_31355314_- | ENSG00000146674.13 | ENST00000381086 | hsa-miR-6891-5p | 45912908 | 45912915 | 8mer-1a | 45912908 | 45912930 | 152 | -28.26 |
CAediting_468389 | chr6_31355314_- | ENSG00000146674.13 | ENST00000613132 | hsa-miR-6891-5p | 45912908 | 45912915 | 8mer-1a | 45912908 | 45912930 | 152 | -28.26 |
CAediting_468389 | chr6_31355314_- | ENSG00000146674.13 | ENST00000275521 | hsa-miR-6891-5p | 45912908 | 45912915 | 8mer-1a | 45912908 | 45912930 | 152 | -28.26 |
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The effects of the RNA editing to the stability of the RNA structures for IGFBP3 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for IGFBP3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BLCA | CAediting_543198 | chr7_45915849_- | 0.0228259697628331 | 0.211249011148968 | . | . | . | . |
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Relation with cancer stages for IGFBP3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BLCA | pathologic_stage | CAediting_543198 | chr7_45915849_- | 0.0280813417070436 | 0.203967482695726 |
BLCA | pathologic_stage | CAediting_543205 | chr7_45915991_- | 8.08796285192844e-06 | 0.425902567467327 |
BLCA | pathologic_stage | CAediting_543208 | chr7_45916046_- | 0.000269990975123524 | 0.358398047181089 |
BLCA | pathologic_stage | CAediting_543209 | chr7_45916047_- | 0.00140363130351745 | 0.31671579536299 |
KIRC | pathologic_stage | CAediting_543195 | chr7_45915815_- | 0.0261768064669577 | 0.277924207208984 |
KIRC | pathologic_stage | CAediting_543198 | chr7_45915849_- | 0.00025539803073139 | 0.229334740396302 |
KIRC | pathologic_stage | CAediting_543205 | chr7_45915991_- | 2.33047363202105e-07 | 0.310629703889025 |
KIRC | pathologic_stage | CAediting_543208 | chr7_45916046_- | 0.000303889035994899 | 0.228402112336256 |
KIRC | pathologic_stage | CAediting_543209 | chr7_45916047_- | 0.000101004385816089 | 0.243420128337588 |
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Relation with survival for IGFBP3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for IGFBP3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
IGFBP3 | P17936 | DB00523 | Alitretinoin | Insulin-like growth factor-binding protein 3 | SmallMoleculeDrug | approved|investigational |
IGFBP3 | P17936 | DB01277 | Mecasermin | Insulin-like growth factor-binding protein 3 | BiotechDrug | approved|investigational |
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RelatedDiseases for IGFBP3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
IGFBP3 | C0033578 | Prostatic Neoplasms | 3 | CTD_human |
IGFBP3 | C0376358 | Malignant neoplasm of prostate | 3 | CTD_human |
IGFBP3 | C0000786 | Spontaneous abortion | 1 | CTD_human |
IGFBP3 | C0000822 | Abortion, Tubal | 1 | CTD_human |
IGFBP3 | C0003873 | Rheumatoid Arthritis | 1 | CTD_human |
IGFBP3 | C0004352 | Autistic Disorder | 1 | CTD_human |
IGFBP3 | C0005684 | Malignant neoplasm of urinary bladder | 1 | CTD_human |
IGFBP3 | C0005695 | Bladder Neoplasm | 1 | CTD_human |
IGFBP3 | C0007138 | Carcinoma, Transitional Cell | 1 | CTD_human |
IGFBP3 | C0009402 | Colorectal Carcinoma | 1 | CTD_human;UNIPROT |
IGFBP3 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
IGFBP3 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
IGFBP3 | C0024623 | Malignant neoplasm of stomach | 1 | CTD_human |
IGFBP3 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
IGFBP3 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
IGFBP3 | C0175693 | Russell-Silver syndrome | 1 | GENOMICS_ENGLAND |
IGFBP3 | C1708349 | Hereditary Diffuse Gastric Cancer | 1 | CTD_human |
IGFBP3 | C3830362 | Early Pregnancy Loss | 1 | CTD_human |
IGFBP3 | C4552766 | Miscarriage | 1 | CTD_human |