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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: ACSM2B (CAeditome ID:348158) |
Gene summary for ACSM2B |
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Gene information | Gene symbol | ACSM2B | Gene ID | 348158 |
Gene name | acyl-CoA synthetase medium chain family member 2B | |
Synonyms | ACSM2|HXMA|HYST1046 | |
Cytomap | 16p12.3 | |
Type of gene | protein-coding | |
Description | acyl-coenzyme A synthetase ACSM2B, mitochondrialacyl-CoA synthetase medium-chain family member 2benzoate--CoA ligasebutyrate--CoA ligase 2Bbutyryl-coenzyme A synthetase 2Bmiddle-chain acyl-CoA synthetase 2Bxenobiotic/medium-chain fatty acid-CoA liga | |
Modification date | 20210518 | |
UniProtAcc | Q68CK6 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
ACSM2B | GO:0018858 | Acyl-coenzyme A synthetase ACSM2B, mitochondrial | 10434065 |
ACSM2B | GO:0018858 | Acyl-coenzyme A synthetase ACSM2B, mitochondrial | 12616642 |
ACSM2B | GO:0005739 | Acyl-coenzyme A synthetase ACSM2B, mitochondrial | 12616642 |
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RNA A-to-I events for ACSM2B |
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CAediting_1098242(20560314, -), CAediting_1098243(20560333, -), CAediting_1098244(20560342, -), CAediting_1098245(20560350, -), CAediting_1098246(20560362, -), CAediting_1098247(20560441, -), CAediting_1098248(20560453, -), CAediting_1098249(20560466, -), CAediting_1098250(20560476, -), CAediting_1098251(20560479, -), CAediting_1098252(20560493, -), CAediting_1098253(20560499, -), CAediting_1098254(20560503, -), CAediting_1098255(20560507, -), CAediting_1098256(20560530, -), CAediting_1098257(20560562, -), CAediting_1098258(20560563, -), CAediting_1098259(20560564, -), CAediting_1098260(20560573, -), CAediting_1098261(20560581, -), CAediting_1098262(20560582, -), CAediting_1098263(20560586, -), CAediting_1098264(20560587, -), CAediting_1098265(20560588, -), CAediting_1098266(20560590, -), CAediting_1098267(20560595, -), CAediting_1098268(20560599, -), CAediting_1098269(20560609, -), CAediting_1098270(20560611, -), CAediting_1098271(20561256, -), CAediting_1098272(20561266, -), CAediting_1098273(20561271, -), CAediting_1098274(20561273, -), CAediting_1098275(20561287, -), CAediting_1098276(20561295, -), CAediting_1098277(20561313, -), CAediting_1098278(20561354, -), CAediting_1098279(20561363, -), CAediting_1098280(20561397, -), CAediting_1098281(20561525, -), CAediting_1098282(20561531, -), CAediting_1098283(20561559, -), CAediting_1098284(20561577, -), |
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RNA editing positional annotations for ACSM2B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1098242 | chr16_20560314_- | ncRNA_intronic |
CAediting_1098243 | chr16_20560333_- | ncRNA_intronic |
CAediting_1098244 | chr16_20560342_- | ncRNA_intronic |
CAediting_1098245 | chr16_20560350_- | ncRNA_intronic |
CAediting_1098246 | chr16_20560362_- | ncRNA_intronic |
CAediting_1098247 | chr16_20560441_- | ncRNA_intronic |
CAediting_1098248 | chr16_20560453_- | ncRNA_intronic |
CAediting_1098249 | chr16_20560466_- | ncRNA_intronic |
CAediting_1098250 | chr16_20560476_- | ncRNA_intronic |
CAediting_1098251 | chr16_20560479_- | ncRNA_intronic |
CAediting_1098252 | chr16_20560493_- | ncRNA_intronic |
CAediting_1098253 | chr16_20560499_- | ncRNA_intronic |
CAediting_1098254 | chr16_20560503_- | ncRNA_intronic |
CAediting_1098255 | chr16_20560507_- | ncRNA_intronic |
CAediting_1098256 | chr16_20560530_- | ncRNA_intronic |
CAediting_1098257 | chr16_20560562_- | ncRNA_intronic |
CAediting_1098258 | chr16_20560563_- | ncRNA_intronic |
CAediting_1098259 | chr16_20560564_- | ncRNA_intronic |
CAediting_1098260 | chr16_20560573_- | ncRNA_intronic |
CAediting_1098261 | chr16_20560581_- | ncRNA_intronic |
CAediting_1098262 | chr16_20560582_- | ncRNA_intronic |
CAediting_1098263 | chr16_20560586_- | ncRNA_intronic |
CAediting_1098264 | chr16_20560587_- | ncRNA_intronic |
CAediting_1098265 | chr16_20560588_- | ncRNA_intronic |
CAediting_1098266 | chr16_20560590_- | ncRNA_intronic |
CAediting_1098267 | chr16_20560595_- | ncRNA_intronic |
CAediting_1098268 | chr16_20560599_- | ncRNA_intronic |
CAediting_1098269 | chr16_20560609_- | ncRNA_intronic |
CAediting_1098270 | chr16_20560611_- | ncRNA_intronic |
CAediting_1098271 | chr16_20561256_- | ncRNA_intronic |
CAediting_1098272 | chr16_20561266_- | ncRNA_intronic |
CAediting_1098273 | chr16_20561271_- | ncRNA_intronic |
CAediting_1098274 | chr16_20561273_- | ncRNA_intronic |
CAediting_1098275 | chr16_20561287_- | ncRNA_intronic |
CAediting_1098276 | chr16_20561295_- | ncRNA_intronic |
CAediting_1098277 | chr16_20561313_- | ncRNA_intronic |
CAediting_1098278 | chr16_20561354_- | ncRNA_intronic |
CAediting_1098279 | chr16_20561363_- | ncRNA_intronic |
CAediting_1098280 | chr16_20561397_- | ncRNA_intronic |
CAediting_1098281 | chr16_20561525_- | ncRNA_intronic |
CAediting_1098282 | chr16_20561531_- | ncRNA_intronic |
CAediting_1098283 | chr16_20561559_- | ncRNA_intronic |
CAediting_1098284 | chr16_20561577_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1098242 | chr16_20560314_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098243 | chr16_20560333_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098244 | chr16_20560342_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098245 | chr16_20560350_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098246 | chr16_20560362_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098247 | chr16_20560441_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098248 | chr16_20560453_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098249 | chr16_20560466_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098250 | chr16_20560476_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098251 | chr16_20560479_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098252 | chr16_20560493_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098253 | chr16_20560499_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098254 | chr16_20560503_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098255 | chr16_20560507_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098256 | chr16_20560530_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098257 | chr16_20560562_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098258 | chr16_20560563_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098259 | chr16_20560564_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098260 | chr16_20560573_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098261 | chr16_20560581_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098262 | chr16_20560582_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098263 | chr16_20560586_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098264 | chr16_20560587_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098265 | chr16_20560588_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098266 | chr16_20560590_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098267 | chr16_20560595_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098268 | chr16_20560599_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098269 | chr16_20560609_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098270 | chr16_20560611_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098271 | chr16_20561256_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098272 | chr16_20561266_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098273 | chr16_20561271_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098274 | chr16_20561273_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098275 | chr16_20561287_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098276 | chr16_20561295_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098277 | chr16_20561313_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098278 | chr16_20561354_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098279 | chr16_20561363_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098280 | chr16_20561397_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098281 | chr16_20561525_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098282 | chr16_20561531_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098283 | chr16_20561559_- | LTR | ERVL-MaLR | MSTB |
CAediting_1098284 | chr16_20561577_- | LTR | ERVL-MaLR | MSTB |
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RNA A-to-I editing events in the alternative splicing sites for ACSM2B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ACSM2B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for ACSM2B |
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The effects of the RNA editing to the miRNA binding sites for ACSM2B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688081 | chr9_63819627_+ | ENSG00000066813.13 | ENST00000569163 | hsa-miR-4477b | 20549730 | 20549737 | 8mer-1a | 20549730 | 20549751 | 154 | -10.86 |
CAediting_1399425 | chr20_1392958_- | ENSG00000066813.13 | ENST00000329697 | hsa-miR-6869-5p | 20536326 | 20536332 | 7mer-m8 | 20536325 | 20536346 | 143 | -18.36 |
CAediting_414656 | chr5_72878640_+ | ENSG00000066813.13 | ENST00000329697 | hsa-miR-4804-3p | 20536633 | 20536640 | 8mer-1a | 20536633 | 20536653 | 154 | -15.2 |
CAediting_1399425 | chr20_1392958_- | ENSG00000066813.13 | ENST00000414188 | hsa-miR-6869-5p | 20536326 | 20536332 | 7mer-m8 | 20536325 | 20536346 | 143 | -18.36 |
CAediting_414656 | chr5_72878640_+ | ENSG00000066813.13 | ENST00000414188 | hsa-miR-4804-3p | 20536633 | 20536640 | 8mer-1a | 20536633 | 20536653 | 154 | -15.2 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000066813.13 | ENST00000569327 | hsa-miR-548aa | 20553836 | 20553842 | 7mer-m8 | 20553835 | 20553859 | 148 | -17.61 |
CAediting_396018 | chr5_1062918_- | ENSG00000066813.13 | ENST00000569327 | hsa-miR-4635 | 20553794 | 20553800 | 7mer-m8 | 20553793 | 20553813 | 150 | -19.71 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for ACSM2B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for ACSM2B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for ACSM2B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
KIRC | pathologic_stage | CAediting_1098255 | chr16_20560507_- | 0.0290956658546717 | 0.291809569240338 |
KIRC | pathologic_stage | CAediting_1098260 | chr16_20560573_- | 0.029174126764618 | 0.252007417619401 |
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Relation with survival for ACSM2B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
KIRC | CAediting_1098268 | chr16_20560599_- | 0.0114605612368222 | 0.0145958 | 90.8312 |
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RelatedDrugs for ACSM2B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ACSM2B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |