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Editing gene: APOC1 (CAeditome ID:341)

Gene summary for APOC1

Gene summary

Gene information	Gene symbol	APOC1
	Gene ID	341
	Gene name	apolipoprotein C1
	Synonyms	Apo-CI\|ApoC-I\|apo-CIB\|apoC-IB
	Cytomap	19q13.32
	Type of gene	protein-coding
	Description	apolipoprotein C-I
	Modification date	20210531
	UniProtAcc	P02654
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
APOC1	GO:0004859	Apolipoprotein C-I	2302419
APOC1	GO:0005504	Apolipoprotein C-I	17339654
APOC1	GO:0055102	Apolipoprotein C-I	15576844
APOC1	GO:0055102	Apolipoprotein C-I	182536
APOC1	GO:0010900	Apolipoprotein C-I	2302419
APOC1	GO:0010916	Apolipoprotein C-I	1917954
APOC1	GO:0032375	Apolipoprotein C-I	10978346
APOC1	GO:0033344	Apolipoprotein C-I	11162594
APOC1	GO:0033700	Apolipoprotein C-I	11162594
APOC1	GO:0034369	Apolipoprotein C-I	10978346
APOC1	GO:0034382	Apolipoprotein C-I	4020294
APOC1	GO:0045717	Apolipoprotein C-I	15576844
APOC1	GO:0045833	Apolipoprotein C-I	182536
APOC1	GO:0048261	Apolipoprotein C-I	1917954
APOC1	GO:0050995	Apolipoprotein C-I	15576844
APOC1	GO:0051005	Apolipoprotein C-I	15576844
APOC1	GO:0005783	Apolipoprotein C-I	0000054
APOC1	GO:0034361	Apolipoprotein C-I	15576844
APOC1	GO:0034364	Apolipoprotein C-I	15576844

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RNA A-to-I events for APOC1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000130208.8

RNA A-to-I editing events in Cancer.

CAediting_1361657(44915349, +), CAediting_1361658(44915374, +), CAediting_1361659(44915476, +), CAediting_1361660(44915477, +), CAediting_1361661(44915492, +), CAediting_1361662(44915495, +), CAediting_1361663(44915497, +), CAediting_1361664(44915501, +), CAediting_1361665(44915537, +), CAediting_1361666(44915551, +), CAediting_1361667(44915558, +), CAediting_1361668(44915559, +), CAediting_1361669(44915560, +), CAediting_1361670(44915572, +), CAediting_1361671(44915574, +), CAediting_1361672(44915581, +), CAediting_1361673(44915693, +), CAediting_1361674(44915703, +), CAediting_1361675(44915711, +), CAediting_1361676(44915712, +), CAediting_1361677(44915717, +), CAediting_1361678(44915790, +), CAediting_1361679(44915791, +), CAediting_1361680(44915802, +), CAediting_1361681(44915806, +), CAediting_1361682(44915807, +), CAediting_1361683(44915809, +), CAediting_1361684(44915811, +), CAediting_1361685(44915814, +), CAediting_1361686(44915815, +), CAediting_1361687(44915816, +), CAediting_1361688(44915817, +), CAediting_1361689(44915818, +), CAediting_1361690(44915819, +), CAediting_1361691(44915822, +), CAediting_1361692(44915826, +), CAediting_1361693(44915848, +), CAediting_1361694(44915875, +), CAediting_1361695(44915880, +), CAediting_1361696(44915890, +), CAediting_1361697(44915910, +), CAediting_1361698(44915914, +), CAediting_1361699(44915919, +), CAediting_1361700(44915921, +), CAediting_1361701(44915953, +), CAediting_1361702(44915956, +), CAediting_1361703(44915975, +), CAediting_1361704(44915987, +), CAediting_1361705(44916058, +), CAediting_1361706(44916081, +), CAediting_1361707(44916092, +), CAediting_1361708(44916102, +), CAediting_1361709(44916119, +), CAediting_1361710(44916124, +), CAediting_1361711(44916562, +), CAediting_1361712(44916568, +), CAediting_1361713(44916575, +), CAediting_1361714(44916579, +), CAediting_1361715(44916603, +), CAediting_1361716(44916608, +), CAediting_1361717(44916642, +), CAediting_1361718(44916656, +), CAediting_1361719(44916657, +), CAediting_1361720(44916658, +), CAediting_1361721(44916662, +), CAediting_1361722(44916665, +), CAediting_1361723(44916667, +), CAediting_1361724(44916668, +), CAediting_1361725(44916673, +), CAediting_1361726(44916681, +), CAediting_1361727(44916699, +), CAediting_1361728(44916700, +), CAediting_1361729(44916705, +), CAediting_1361730(44916709, +), CAediting_1361731(44916740, +), CAediting_1361732(44916741, +), CAediting_1361733(44916744, +), CAediting_1361734(44916748, +), CAediting_1361735(44916759, +), CAediting_1361736(44916866, +), CAediting_1361737(44916868, +), CAediting_1361738(44916880, +), CAediting_1361739(44917320, +), CAediting_1361740(44917323, +), CAediting_1361741(44917341, +), CAediting_1361742(44917342, +), CAediting_1361743(44917358, +), CAediting_1361744(44917427, +), CAediting_1361745(44917431, +), CAediting_1361746(44917463, +), CAediting_1361747(44917480, +), CAediting_1361748(44917503, +), CAediting_1361749(44917512, +), CAediting_1361750(44917527, +), CAediting_1361751(44917595, +), CAediting_1361752(44917701, +), CAediting_1361753(44917705, +), CAediting_1361754(44917708, +), CAediting_1361755(44917717, +), CAediting_1361756(44917723, +), CAediting_1361757(44917724, +), CAediting_1361758(44917751, +), CAediting_1361759(44917759, +), CAediting_1361760(44917764, +), CAediting_1361761(44917791, +), CAediting_1361762(44917795, +), CAediting_1361763(44917798, +), CAediting_1361764(44917810, +), CAediting_1361765(44917815, +), CAediting_1361766(44917819, +), CAediting_1361767(44917827, +), CAediting_1361768(44917853, +), CAediting_1361769(44917863, +), CAediting_1361770(44917880, +), CAediting_1361771(44917929, +), CAediting_1361772(44917979, +), CAediting_1361773(44917983, +), CAediting_1361774(44917984, +), CAediting_1361775(44918007, +), CAediting_1361776(44918012, +), CAediting_1361777(44918041, +), CAediting_1361778(44918058, +), CAediting_1361779(44918084, +), CAediting_1361780(44918086, +), CAediting_1361781(44918087, +), CAediting_1361782(44918106, +), CAediting_1361783(44918107, +), CAediting_1361784(44918108, +), CAediting_1361785(44918112, +), CAediting_1361786(44918117, +), CAediting_1361787(44918118, +), CAediting_1361788(44918121, +), CAediting_1361789(44918147, +), CAediting_1361790(44918188, +), CAediting_1361791(44918243, +), CAediting_1361792(44918250, +), CAediting_1361793(44918381, +), CAediting_1361794(44918405, +), CAediting_1361795(44918417, +), CAediting_1361796(44918426, +), CAediting_1361797(44918442, +), CAediting_1361798(44918461, +), CAediting_1361799(44918488, +), CAediting_1361800(44918491, +), CAediting_1361801(44918501, +), CAediting_1361802(44918584, +), CAediting_1361803(44918616, +), CAediting_1361804(44918637, +), CAediting_1361805(44918638, +), CAediting_1361806(44918639, +), CAediting_1361807(44918651, +), CAediting_1361808(44918653, +), CAediting_1361809(44918660, +), CAediting_1361810(44918713, +), CAediting_1361811(44918739, +), CAediting_1361812(44918746, +), CAediting_1361813(44918759, +), CAediting_1361814(44918763, +), CAediting_1361815(44918764, +), CAediting_1361816(44918783, +), CAediting_1361817(44918789, +), CAediting_1361818(44918799, +), CAediting_1361819(44918801, +), CAediting_1361820(44918817, +), CAediting_1361821(44918833, +), CAediting_1361822(44918839, +), CAediting_1361823(44918849, +), CAediting_1361824(44918856, +), CAediting_1361825(44918859, +), CAediting_1361826(44918868, +), CAediting_1361827(44918881, +), CAediting_1361828(44918893, +), CAediting_1361829(44918894, +), CAediting_1361830(44918901, +), CAediting_1361831(44918919, +), CAediting_1361832(44918920, +), CAediting_1361833(44918921, +), CAediting_1361834(44918933, +),

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RNA editing positional annotations for APOC1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1361657	chr19_44915349_+	intronic
CAediting_1361658	chr19_44915374_+	intronic
CAediting_1361659	chr19_44915476_+	intronic
CAediting_1361660	chr19_44915477_+	intronic
CAediting_1361661	chr19_44915492_+	intronic
CAediting_1361662	chr19_44915495_+	intronic
CAediting_1361663	chr19_44915497_+	intronic
CAediting_1361664	chr19_44915501_+	intronic
CAediting_1361665	chr19_44915537_+	intronic
CAediting_1361666	chr19_44915551_+	intronic
CAediting_1361667	chr19_44915558_+	intronic
CAediting_1361668	chr19_44915559_+	intronic
CAediting_1361669	chr19_44915560_+	intronic
CAediting_1361670	chr19_44915572_+	intronic
CAediting_1361671	chr19_44915574_+	intronic
CAediting_1361672	chr19_44915581_+	intronic
CAediting_1361673	chr19_44915693_+	intronic
CAediting_1361674	chr19_44915703_+	intronic
CAediting_1361675	chr19_44915711_+	intronic
CAediting_1361676	chr19_44915712_+	intronic
CAediting_1361677	chr19_44915717_+	intronic
CAediting_1361678	chr19_44915790_+	intronic
CAediting_1361679	chr19_44915791_+	intronic
CAediting_1361680	chr19_44915802_+	intronic
CAediting_1361681	chr19_44915806_+	intronic
CAediting_1361682	chr19_44915807_+	intronic
CAediting_1361683	chr19_44915809_+	intronic
CAediting_1361684	chr19_44915811_+	intronic
CAediting_1361685	chr19_44915814_+	intronic
CAediting_1361686	chr19_44915815_+	intronic
CAediting_1361687	chr19_44915816_+	intronic
CAediting_1361688	chr19_44915817_+	intronic
CAediting_1361689	chr19_44915818_+	intronic
CAediting_1361690	chr19_44915819_+	intronic
CAediting_1361691	chr19_44915822_+	intronic
CAediting_1361692	chr19_44915826_+	intronic
CAediting_1361693	chr19_44915848_+	intronic
CAediting_1361694	chr19_44915875_+	intronic
CAediting_1361695	chr19_44915880_+	intronic
CAediting_1361696	chr19_44915890_+	intronic
CAediting_1361697	chr19_44915910_+	intronic
CAediting_1361698	chr19_44915914_+	intronic
CAediting_1361699	chr19_44915919_+	intronic
CAediting_1361700	chr19_44915921_+	intronic
CAediting_1361701	chr19_44915953_+	intronic
CAediting_1361702	chr19_44915956_+	intronic
CAediting_1361703	chr19_44915975_+	intronic
CAediting_1361704	chr19_44915987_+	intronic
CAediting_1361705	chr19_44916058_+	intronic
CAediting_1361706	chr19_44916081_+	intronic
CAediting_1361707	chr19_44916092_+	intronic
CAediting_1361708	chr19_44916102_+	intronic
CAediting_1361709	chr19_44916119_+	intronic
CAediting_1361710	chr19_44916124_+	intronic
CAediting_1361711	chr19_44916562_+	intronic
CAediting_1361712	chr19_44916568_+	intronic
CAediting_1361713	chr19_44916575_+	intronic
CAediting_1361714	chr19_44916579_+	intronic
CAediting_1361715	chr19_44916603_+	intronic
CAediting_1361716	chr19_44916608_+	intronic
CAediting_1361717	chr19_44916642_+	intronic
CAediting_1361718	chr19_44916656_+	intronic
CAediting_1361719	chr19_44916657_+	intronic
CAediting_1361720	chr19_44916658_+	intronic
CAediting_1361721	chr19_44916662_+	intronic
CAediting_1361722	chr19_44916665_+	intronic
CAediting_1361723	chr19_44916667_+	intronic
CAediting_1361724	chr19_44916668_+	intronic
CAediting_1361725	chr19_44916673_+	intronic
CAediting_1361726	chr19_44916681_+	intronic
CAediting_1361727	chr19_44916699_+	intronic
CAediting_1361728	chr19_44916700_+	intronic
CAediting_1361729	chr19_44916705_+	intronic
CAediting_1361730	chr19_44916709_+	intronic
CAediting_1361731	chr19_44916740_+	intronic
CAediting_1361732	chr19_44916741_+	intronic
CAediting_1361733	chr19_44916744_+	intronic
CAediting_1361734	chr19_44916748_+	intronic
CAediting_1361735	chr19_44916759_+	intronic
CAediting_1361736	chr19_44916866_+	intronic
CAediting_1361737	chr19_44916868_+	intronic
CAediting_1361738	chr19_44916880_+	intronic
CAediting_1361739	chr19_44917320_+	intronic
CAediting_1361740	chr19_44917323_+	intronic
CAediting_1361741	chr19_44917341_+	intronic
CAediting_1361742	chr19_44917342_+	intronic
CAediting_1361743	chr19_44917358_+	intronic
CAediting_1361744	chr19_44917427_+	intronic
CAediting_1361745	chr19_44917431_+	intronic
CAediting_1361746	chr19_44917463_+	intronic
CAediting_1361747	chr19_44917480_+	intronic
CAediting_1361748	chr19_44917503_+	intronic
CAediting_1361749	chr19_44917512_+	intronic
CAediting_1361750	chr19_44917527_+	intronic
CAediting_1361751	chr19_44917595_+	intronic
CAediting_1361752	chr19_44917701_+	intronic
CAediting_1361753	chr19_44917705_+	intronic
CAediting_1361754	chr19_44917708_+	intronic
CAediting_1361755	chr19_44917717_+	intronic
CAediting_1361756	chr19_44917723_+	intronic
CAediting_1361757	chr19_44917724_+	intronic
CAediting_1361758	chr19_44917751_+	intronic
CAediting_1361759	chr19_44917759_+	intronic
CAediting_1361760	chr19_44917764_+	intronic
CAediting_1361761	chr19_44917791_+	intronic
CAediting_1361762	chr19_44917795_+	intronic
CAediting_1361763	chr19_44917798_+	intronic
CAediting_1361764	chr19_44917810_+	intronic
CAediting_1361765	chr19_44917815_+	intronic
CAediting_1361766	chr19_44917819_+	intronic
CAediting_1361767	chr19_44917827_+	intronic
CAediting_1361768	chr19_44917853_+	intronic
CAediting_1361769	chr19_44917863_+	intronic
CAediting_1361770	chr19_44917880_+	intronic
CAediting_1361771	chr19_44917929_+	intronic
CAediting_1361772	chr19_44917979_+	intronic
CAediting_1361773	chr19_44917983_+	intronic
CAediting_1361774	chr19_44917984_+	intronic
CAediting_1361775	chr19_44918007_+	intronic
CAediting_1361776	chr19_44918012_+	intronic
CAediting_1361777	chr19_44918041_+	intronic
CAediting_1361778	chr19_44918058_+	intronic
CAediting_1361779	chr19_44918084_+	intronic
CAediting_1361780	chr19_44918086_+	intronic
CAediting_1361781	chr19_44918087_+	intronic
CAediting_1361782	chr19_44918106_+	intronic
CAediting_1361783	chr19_44918107_+	intronic
CAediting_1361784	chr19_44918108_+	intronic
CAediting_1361785	chr19_44918112_+	intronic
CAediting_1361786	chr19_44918117_+	intronic
CAediting_1361787	chr19_44918118_+	intronic
CAediting_1361788	chr19_44918121_+	intronic
CAediting_1361789	chr19_44918147_+	intronic
CAediting_1361790	chr19_44918188_+	intronic
CAediting_1361791	chr19_44918243_+	intronic
CAediting_1361792	chr19_44918250_+	intronic
CAediting_1361793	chr19_44918381_+	intronic
CAediting_1361794	chr19_44918405_+	intronic
CAediting_1361795	chr19_44918417_+	intronic
CAediting_1361796	chr19_44918426_+	intronic
CAediting_1361797	chr19_44918442_+	intronic
CAediting_1361798	chr19_44918461_+	intronic
CAediting_1361799	chr19_44918488_+	intronic
CAediting_1361800	chr19_44918491_+	intronic
CAediting_1361801	chr19_44918501_+	intronic
CAediting_1361802	chr19_44918584_+	intronic
CAediting_1361803	chr19_44918616_+	intronic
CAediting_1361804	chr19_44918637_+	intronic
CAediting_1361805	chr19_44918638_+	intronic
CAediting_1361806	chr19_44918639_+	intronic
CAediting_1361807	chr19_44918651_+	intronic
CAediting_1361808	chr19_44918653_+	intronic
CAediting_1361809	chr19_44918660_+	intronic
CAediting_1361810	chr19_44918713_+	intronic
CAediting_1361811	chr19_44918739_+	intronic
CAediting_1361812	chr19_44918746_+	intronic
CAediting_1361813	chr19_44918759_+	intronic
CAediting_1361814	chr19_44918763_+	intronic
CAediting_1361815	chr19_44918764_+	intronic
CAediting_1361816	chr19_44918783_+	intronic
CAediting_1361817	chr19_44918789_+	intronic
CAediting_1361818	chr19_44918799_+	intronic
CAediting_1361819	chr19_44918801_+	intronic
CAediting_1361820	chr19_44918817_+	intronic
CAediting_1361821	chr19_44918833_+	intronic
CAediting_1361822	chr19_44918839_+	splicing
CAediting_1361823	chr19_44918849_+	exonic
CAediting_1361824	chr19_44918856_+	exonic
CAediting_1361825	chr19_44918859_+	exonic
CAediting_1361826	chr19_44918868_+	exonic
CAediting_1361827	chr19_44918881_+	exonic
CAediting_1361828	chr19_44918893_+	exonic
CAediting_1361829	chr19_44918894_+	exonic
CAediting_1361830	chr19_44918901_+	UTR3
CAediting_1361831	chr19_44918919_+	UTR3
CAediting_1361832	chr19_44918920_+	UTR3
CAediting_1361833	chr19_44918921_+	UTR3
CAediting_1361834	chr19_44918933_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1361657	chr19_44915349_+	SINE	Alu	AluYc
CAediting_1361658	chr19_44915374_+	SINE	Alu	AluYc
CAediting_1361659	chr19_44915476_+	SINE	Alu	AluYc
CAediting_1361660	chr19_44915477_+	SINE	Alu	AluYc
CAediting_1361661	chr19_44915492_+	SINE	Alu	AluYc
CAediting_1361662	chr19_44915495_+	SINE	Alu	AluYc
CAediting_1361663	chr19_44915497_+	SINE	Alu	AluYc
CAediting_1361664	chr19_44915501_+	SINE	Alu	AluYc
CAediting_1361665	chr19_44915537_+	SINE	Alu	AluYc
CAediting_1361666	chr19_44915551_+	SINE	Alu	AluYc
CAediting_1361667	chr19_44915558_+	SINE	Alu	AluYc
CAediting_1361668	chr19_44915559_+	SINE	Alu	AluYc
CAediting_1361669	chr19_44915560_+	SINE	Alu	AluYc
CAediting_1361670	chr19_44915572_+	SINE	Alu	AluYc
CAediting_1361671	chr19_44915574_+	SINE	Alu	AluYc
CAediting_1361672	chr19_44915581_+	SINE	Alu	AluYc
CAediting_1361673	chr19_44915693_+	SINE	Alu	AluSz
CAediting_1361674	chr19_44915703_+	SINE	Alu	AluSz
CAediting_1361675	chr19_44915711_+	SINE	Alu	AluSz
CAediting_1361676	chr19_44915712_+	SINE	Alu	AluSz
CAediting_1361677	chr19_44915717_+	SINE	Alu	AluSz
CAediting_1361678	chr19_44915790_+	SINE	Alu	AluSz
CAediting_1361679	chr19_44915791_+	SINE	Alu	AluSz
CAediting_1361680	chr19_44915802_+	SINE	Alu	AluSz
CAediting_1361681	chr19_44915806_+	SINE	Alu	AluSz
CAediting_1361682	chr19_44915807_+	SINE	Alu	AluSz
CAediting_1361683	chr19_44915809_+	SINE	Alu	AluSz
CAediting_1361684	chr19_44915811_+	SINE	Alu	AluSz
CAediting_1361685	chr19_44915814_+	SINE	Alu	AluSz
CAediting_1361686	chr19_44915815_+	SINE	Alu	AluSz
CAediting_1361687	chr19_44915816_+	SINE	Alu	AluSz
CAediting_1361688	chr19_44915817_+	SINE	Alu	AluSz
CAediting_1361689	chr19_44915818_+	SINE	Alu	AluSz
CAediting_1361690	chr19_44915819_+	SINE	Alu	AluSz
CAediting_1361691	chr19_44915822_+	SINE	Alu	AluSz
CAediting_1361692	chr19_44915826_+	SINE	Alu	AluSz
CAediting_1361693	chr19_44915848_+	SINE	Alu	AluSz
CAediting_1361694	chr19_44915875_+	SINE	Alu	AluSz
CAediting_1361695	chr19_44915880_+	SINE	Alu	AluSz
CAediting_1361696	chr19_44915890_+	SINE	Alu	AluSz
CAediting_1361697	chr19_44915910_+	SINE	Alu	AluSz
CAediting_1361698	chr19_44915914_+	SINE	Alu	AluSz
CAediting_1361699	chr19_44915919_+	SINE	Alu	AluSz
CAediting_1361700	chr19_44915921_+	SINE	Alu	AluSz
CAediting_1361701	chr19_44915953_+	SINE	Alu	AluSz
CAediting_1361702	chr19_44915956_+	SINE	Alu	AluSz
CAediting_1361703	chr19_44915975_+	SINE	Alu	AluSz
CAediting_1361704	chr19_44915987_+	SINE	Alu	AluSz
CAediting_1361705	chr19_44916058_+	SINE	Alu	AluSx
CAediting_1361706	chr19_44916081_+	SINE	Alu	AluSx
CAediting_1361707	chr19_44916092_+	SINE	Alu	AluSx
CAediting_1361708	chr19_44916102_+	SINE	Alu	AluSx
CAediting_1361709	chr19_44916119_+	SINE	Alu	AluSx
CAediting_1361710	chr19_44916124_+	SINE	Alu	AluSx
CAediting_1361711	chr19_44916562_+	SINE	Alu	AluSx
CAediting_1361712	chr19_44916568_+	SINE	Alu	AluSx
CAediting_1361713	chr19_44916575_+	SINE	Alu	AluSx
CAediting_1361714	chr19_44916579_+	SINE	Alu	AluSx
CAediting_1361715	chr19_44916603_+	SINE	Alu	AluSx
CAediting_1361716	chr19_44916608_+	SINE	Alu	AluSx
CAediting_1361717	chr19_44916642_+	SINE	Alu	AluSx
CAediting_1361718	chr19_44916656_+	SINE	Alu	AluSx
CAediting_1361719	chr19_44916657_+	SINE	Alu	AluSx
CAediting_1361720	chr19_44916658_+	SINE	Alu	AluSx
CAediting_1361721	chr19_44916662_+	SINE	Alu	AluSx
CAediting_1361722	chr19_44916665_+	SINE	Alu	AluSx
CAediting_1361723	chr19_44916667_+	SINE	Alu	AluSx
CAediting_1361724	chr19_44916668_+	SINE	Alu	AluSx
CAediting_1361725	chr19_44916673_+	SINE	Alu	AluSx
CAediting_1361726	chr19_44916681_+	SINE	Alu	AluSx
CAediting_1361727	chr19_44916699_+	SINE	Alu	AluSx
CAediting_1361728	chr19_44916700_+	SINE	Alu	AluSx
CAediting_1361729	chr19_44916705_+	SINE	Alu	AluSx
CAediting_1361730	chr19_44916709_+	SINE	Alu	AluSx
CAediting_1361731	chr19_44916740_+	SINE	Alu	AluSx
CAediting_1361732	chr19_44916741_+	SINE	Alu	AluSx
CAediting_1361733	chr19_44916744_+	SINE	Alu	AluSx
CAediting_1361734	chr19_44916748_+	SINE	Alu	AluSx
CAediting_1361735	chr19_44916759_+	SINE	Alu	AluSx
CAediting_1361736	chr19_44916866_+	SINE	Alu	FLAM_C
CAediting_1361737	chr19_44916868_+	SINE	Alu	FLAM_C
CAediting_1361738	chr19_44916880_+	SINE	Alu	FLAM_C
CAediting_1361739	chr19_44917320_+	SINE	Alu	AluJr
CAediting_1361740	chr19_44917323_+	SINE	Alu	AluJr
CAediting_1361741	chr19_44917341_+	SINE	Alu	AluJr
CAediting_1361742	chr19_44917342_+	SINE	Alu	AluJr
CAediting_1361743	chr19_44917358_+	SINE	Alu	AluJr
CAediting_1361744	chr19_44917427_+	SINE	Alu	AluJr
CAediting_1361745	chr19_44917431_+	SINE	Alu	AluJr
CAediting_1361746	chr19_44917463_+	SINE	Alu	AluJr
CAediting_1361747	chr19_44917480_+	SINE	Alu	AluJr
CAediting_1361748	chr19_44917503_+	SINE	Alu	AluJr
CAediting_1361749	chr19_44917512_+	SINE	Alu	AluJr
CAediting_1361750	chr19_44917527_+	SINE	Alu	AluJr
CAediting_1361751	chr19_44917595_+	SINE	Alu	AluJr
CAediting_1361752	chr19_44917701_+	SINE	Alu	AluSx
CAediting_1361753	chr19_44917705_+	SINE	Alu	AluSx
CAediting_1361754	chr19_44917708_+	SINE	Alu	AluSx
CAediting_1361755	chr19_44917717_+	SINE	Alu	AluSx
CAediting_1361756	chr19_44917723_+	SINE	Alu	AluSx
CAediting_1361757	chr19_44917724_+	SINE	Alu	AluSx
CAediting_1361758	chr19_44917751_+	SINE	Alu	AluSx
CAediting_1361759	chr19_44917759_+	SINE	Alu	AluSx
CAediting_1361760	chr19_44917764_+	SINE	Alu	AluSx
CAediting_1361761	chr19_44917791_+	SINE	Alu	AluSx
CAediting_1361762	chr19_44917795_+	SINE	Alu	AluSx
CAediting_1361763	chr19_44917798_+	SINE	Alu	AluSx
CAediting_1361764	chr19_44917810_+	SINE	Alu	AluSx
CAediting_1361765	chr19_44917815_+	SINE	Alu	AluSx
CAediting_1361766	chr19_44917819_+	SINE	Alu	AluSx
CAediting_1361767	chr19_44917827_+	SINE	Alu	AluSx
CAediting_1361768	chr19_44917853_+	SINE	Alu	AluSx
CAediting_1361769	chr19_44917863_+	SINE	Alu	AluSx
CAediting_1361770	chr19_44917880_+	SINE	Alu	AluSx
CAediting_1361771	chr19_44917929_+	SINE	Alu	AluSx
CAediting_1361772	chr19_44917979_+	SINE	Alu	AluSx
CAediting_1361773	chr19_44917983_+	SINE	Alu	AluSx
CAediting_1361774	chr19_44917984_+	SINE	Alu	AluSx
CAediting_1361775	chr19_44918007_+	SINE	Alu	AluSg
CAediting_1361776	chr19_44918012_+	SINE	Alu	AluSg
CAediting_1361777	chr19_44918041_+	SINE	Alu	AluSg
CAediting_1361778	chr19_44918058_+	SINE	Alu	AluSg
CAediting_1361779	chr19_44918084_+	SINE	Alu	AluSg
CAediting_1361780	chr19_44918086_+	SINE	Alu	AluSg
CAediting_1361781	chr19_44918087_+	SINE	Alu	AluSg
CAediting_1361782	chr19_44918106_+	SINE	Alu	AluSg
CAediting_1361783	chr19_44918107_+	SINE	Alu	AluSg
CAediting_1361784	chr19_44918108_+	SINE	Alu	AluSg
CAediting_1361785	chr19_44918112_+	SINE	Alu	AluSg
CAediting_1361786	chr19_44918117_+	SINE	Alu	AluSg
CAediting_1361787	chr19_44918118_+	SINE	Alu	AluSg
CAediting_1361788	chr19_44918121_+	SINE	Alu	AluSg
CAediting_1361789	chr19_44918147_+	SINE	Alu	AluSg
CAediting_1361790	chr19_44918188_+	SINE	Alu	AluSg
CAediting_1361791	chr19_44918243_+	SINE	Alu	AluSg
CAediting_1361792	chr19_44918250_+	SINE	Alu	AluSg
CAediting_1361793	chr19_44918381_+	SINE	Alu	AluY
CAediting_1361794	chr19_44918405_+	SINE	Alu	AluY
CAediting_1361795	chr19_44918417_+	SINE	Alu	AluY
CAediting_1361796	chr19_44918426_+	SINE	Alu	AluY
CAediting_1361797	chr19_44918442_+	SINE	Alu	AluY
CAediting_1361798	chr19_44918461_+	SINE	Alu	AluY
CAediting_1361799	chr19_44918488_+	SINE	Alu	AluY
CAediting_1361800	chr19_44918491_+	SINE	Alu	AluY
CAediting_1361801	chr19_44918501_+	SINE	Alu	AluY
CAediting_1361802	chr19_44918584_+	SINE	Alu	AluY
CAediting_1361803	chr19_44918616_+	SINE	Alu	AluY
CAediting_1361804	chr19_44918637_+	SINE	Alu	AluY
CAediting_1361805	chr19_44918638_+	SINE	Alu	AluY
CAediting_1361806	chr19_44918639_+	SINE	Alu	AluY
CAediting_1361807	chr19_44918651_+	SINE	Alu	AluY
CAediting_1361808	chr19_44918653_+	SINE	Alu	AluY
CAediting_1361809	chr19_44918660_+	SINE	Alu	AluY
CAediting_1361810	chr19_44918713_+	SINE	Alu	AluSz
CAediting_1361811	chr19_44918739_+	SINE	Alu	AluSz
CAediting_1361812	chr19_44918746_+	SINE	Alu	AluSz
CAediting_1361813	chr19_44918759_+	SINE	Alu	AluSz
CAediting_1361814	chr19_44918763_+	SINE	Alu	AluSz
CAediting_1361815	chr19_44918764_+	SINE	Alu	AluSz
CAediting_1361816	chr19_44918783_+	SINE	Alu	AluSz
CAediting_1361817	chr19_44918789_+	SINE	Alu	AluSz
CAediting_1361818	chr19_44918799_+	SINE	Alu	AluSz
CAediting_1361819	chr19_44918801_+	SINE	Alu	AluSz
CAediting_1361820	chr19_44918817_+	SINE	Alu	AluSz
CAediting_1361821	chr19_44918833_+	SINE	Alu	AluSz
CAediting_1361822	chr19_44918839_+	SINE	Alu	AluSz
CAediting_1361823	chr19_44918849_+	SINE	Alu	AluSz
CAediting_1361824	chr19_44918856_+	SINE	Alu	AluSz
CAediting_1361825	chr19_44918859_+	SINE	Alu	AluSz
CAediting_1361826	chr19_44918868_+	SINE	Alu	AluSz
CAediting_1361827	chr19_44918881_+	SINE	Alu	AluSz
CAediting_1361828	chr19_44918893_+	SINE	Alu	AluSz
CAediting_1361829	chr19_44918894_+	SINE	Alu	AluSz
CAediting_1361830	chr19_44918901_+	SINE	Alu	AluSz
CAediting_1361831	chr19_44918919_+	SINE	Alu	AluSz
CAediting_1361832	chr19_44918920_+	SINE	Alu	AluSz
CAediting_1361833	chr19_44918921_+	SINE	Alu	AluSz
CAediting_1361834	chr19_44918933_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for APOC1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1361802	chr19_44918584_+	44918565:44918587	3SS	0+1i	TAGAATTTTTTGTATTCTTAGCC	-8.91	TAGAATTTTTTGTATTCTTGGCC	-0.16
MEX_2	CAediting_1361802	chr19_44918584_+	44918565:44918587	3SS	0+1i	TAGAATTTTTTGTATTCTTAGCC	-8.91	TAGAATTTTTTGTATTCTTGGCC	-0.16
MEX_1	CAediting_1361802	chr19_44918584_+	44918565:44918587	3SS	0+1i	TAGAATTTTTTGTATTCTTAGCC	-8.91	TAGAATTTTTTGTATTCTTGGCC	-0.16
ES	CAediting_1361819	chr19_44918801_+	44918800:44918808	5SS	2+0i	CAGGTGTGT	6.99	CGGGTGTGT	5.31
MEX_2	CAediting_1361819	chr19_44918801_+	44918800:44918808	5SS	2+0i	CAGGTGTGT	6.99	CGGGTGTGT	5.31
MEX_1	CAediting_1361819	chr19_44918801_+	44918800:44918808	5SS	2+0i	CAGGTGTGT	6.99	CGGGTGTGT	5.31
ES	CAediting_1361821	chr19_44918833_+	44918820:44918842	3SS	0+7i	TGGTATTTTTTGTATTTTTAGTG	-6.04	TGGTATTTTTTGTGTTTTTAGTG	-5.25
MEX_2	CAediting_1361821	chr19_44918833_+	44918820:44918842	3SS	0+7i	TGGTATTTTTTGTATTTTTAGTG	-6.04	TGGTATTTTTTGTGTTTTTAGTG	-5.25
MEX_1	CAediting_1361821	chr19_44918833_+	44918820:44918842	3SS	0+7i	TGGTATTTTTTGTATTTTTAGTG	-6.04	TGGTATTTTTTGTGTTTTTAGTG	-5.25
ES	CAediting_1361822	chr19_44918839_+	44918820:44918842	3SS	0+1i	TGGTATTTTTTGTATTTTTAGTG	-6.04	TGGTATTTTTTGTATTTTTGGTG	2.71
MEX_2	CAediting_1361822	chr19_44918839_+	44918820:44918842	3SS	0+1i	TGGTATTTTTTGTATTTTTAGTG	-6.04	TGGTATTTTTTGTATTTTTGGTG	2.71
MEX_1	CAediting_1361822	chr19_44918839_+	44918820:44918842	3SS	0+1i	TGGTATTTTTTGTATTTTTAGTG	-6.04	TGGTATTTTTTGTATTTTTGGTG	2.71
ES	CAediting_1361823	chr19_44918849_+	44918849:44918871	3SS	0+20i	ACATTTCACCATGTTGCCCAGGT	-12.89	GCATTTCACCATGTTGCCCAGGT	-13.6
MEX_2	CAediting_1361823	chr19_44918849_+	44918849:44918871	3SS	0+20i	ACATTTCACCATGTTGCCCAGGT	-12.89	GCATTTCACCATGTTGCCCAGGT	-13.6
ES	CAediting_1361824	chr19_44918856_+	44918849:44918871	3SS	0+13i	ACATTTCACCATGTTGCCCAGGT	-12.89	ACATTTCGCCATGTTGCCCAGGT	-13.12
MEX_2	CAediting_1361824	chr19_44918856_+	44918849:44918871	3SS	0+13i	ACATTTCACCATGTTGCCCAGGT	-12.89	ACATTTCGCCATGTTGCCCAGGT	-13.12
ES	CAediting_1361825	chr19_44918859_+	44918849:44918871	3SS	0+10i	ACATTTCACCATGTTGCCCAGGT	-12.89	ACATTTCACCGTGTTGCCCAGGT	-11.79
MEX_2	CAediting_1361825	chr19_44918859_+	44918849:44918871	3SS	0+10i	ACATTTCACCATGTTGCCCAGGT	-12.89	ACATTTCACCGTGTTGCCCAGGT	-11.79
ES	CAediting_1361826	chr19_44918868_+	44918867:44918875	5SS	2+0i	CAGGTTGGT	8.08	CGGGTTGGT	3.35
ES	CAediting_1361826	chr19_44918868_+	44918849:44918871	3SS	0+1i	ACATTTCACCATGTTGCCCAGGT	-12.89	ACATTTCACCATGTTGCCCGGGT	-4.14
MEX_2	CAediting_1361826	chr19_44918868_+	44918867:44918875	5SS	2+0i	CAGGTTGGT	8.08	CGGGTTGGT	3.35
MEX_2	CAediting_1361826	chr19_44918868_+	44918849:44918871	3SS	0+1i	ACATTTCACCATGTTGCCCAGGT	-12.89	ACATTTCACCATGTTGCCCGGGT	-4.14
MEX_1	CAediting_1361826	chr19_44918868_+	44918867:44918875	5SS	2+0i	CAGGTTGGT	8.08	CGGGTTGGT	3.35

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000130208.8.APOC1.

Correlation between RNA A-to-I editing and PSI for ENSG00000130208.8.APOC1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for APOC1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for APOC1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for APOC1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1361833	chr19_44918921_+	ENSG00000130208.8	ENST00000590334	hsa-miR-3189-3p	44918915	44918921	7mer-m8	44918903	44918922	149.00	-26.33
CAediting_1361833	chr19_44918921_+	ENSG00000130208.8	ENST00000590334	hsa-miR-6813-3p	44918916	44918922	7mer-m8	44918903	44918923	140.00	-11.13
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-6746-5p	44918913	44918919	7mer-1a	44918898	44918919	140.00	-29.08
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-6771-5p	44918913	44918920	8mer-1a	44918899	44918920	151.00	-28.48
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-3192-5p	44918913	44918920	8mer-1a	44918898	44918920	158.00	-27.95
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-326	44918915	44918921	7mer-m8	44918903	44918922	140.00	-13.37
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-330-5p	44918915	44918921	7mer-m8	44918901	44918922	140.00	-22.03
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-4314	44918914	44918920	7mer-m8	44918904	44918921	140.00	-21.18
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-514a-5p	44918916	44918922	7mer-m8	44918900	44918923	146.00	-19.37
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-514a-5p	44918916	44918922	7mer-m8	44918900	44918923	146.00	-19.37
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-514a-5p	44918916	44918922	7mer-m8	44918900	44918923	146.00	-19.37

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-3689a-3p	44918912	44918919	8mer-1a	44918898	44918919	147	-19.11
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-3689b-3p	44918912	44918919	8mer-1a	44918898	44918919	147	-18.12
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-3689c	44918912	44918919	8mer-1a	44918898	44918919	147	-18.12
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-6779-5p	44918912	44918919	8mer-1a	44918898	44918919	148	-24.93
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-6780a-5p	44918912	44918919	8mer-1a	44918898	44918919	151	-21.41
CAediting_1361831	chr19_44918919_+	ENSG00000130208.8	ENST00000590334	hsa-miR-887-5p	44918913	44918920	8mer-1a	44918899	44918920	154	-16.86
CAediting_1361832	chr19_44918920_+	ENSG00000130208.8	ENST00000590334	hsa-miR-887-5p	44918913	44918920	8mer-1a	44918899	44918920	154	-16.86

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for APOC1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for APOC1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LIHC	CAediting_1361662	chr19_44915495_+	0.0449540161902914	0.279284344177844	0.0348164558716843	0.293330491252824	.	.
LIHC	CAediting_1361668	chr19_44915559_+	0.000307093129475168	0.280888268829891	.	.	.	.
LIHC	CAediting_1361669	chr19_44915560_+	0.0125512570859691	0.180795480501054	.	.	.	.
LIHC	CAediting_1361670	chr19_44915572_+	0.0150304712048466	0.177122648103077	.	.	.	.
LIHC	CAediting_1361691	chr19_44915822_+	0.045727072968269	0.123078628757485	.	.	.	.
LIHC	CAediting_1361692	chr19_44915826_+	0.0306933184944439	0.129182302101439	.	.	.	.
LIHC	CAediting_1361768	chr19_44917853_+	.	.	.	.	0.019939684799468	0.25209144352426

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Relation with cancer stages for APOC1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
LIHC	pathologic_stage	CAediting_1361690	chr19_44915819_+	0.0388030821035527	0.209094338528965
LIHC	pathologic_stage	CAediting_1361834	chr19_44918933_+	0.00617277132202605	0.382124518644087

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Relation with survival for APOC1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for APOC1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for APOC1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
APOC1	C0002395	Alzheimer's Disease	2	CTD_human
APOC1	C0011265	Presenile dementia	2	CTD_human
APOC1	C0276496	Familial Alzheimer Disease (FAD)	2	CTD_human
APOC1	C0494463	Alzheimer Disease, Late Onset	2	CTD_human
APOC1	C0546126	Acute Confusional Senile Dementia	2	CTD_human
APOC1	C0750900	Alzheimer's Disease, Focal Onset	2	CTD_human
APOC1	C0750901	Alzheimer Disease, Early Onset	2	CTD_human
APOC1	C0018801	Heart failure	1	CTD_human
APOC1	C0018802	Congestive heart failure	1	CTD_human
APOC1	C0023212	Left-Sided Heart Failure	1	CTD_human
APOC1	C0235527	Heart Failure, Right-Sided	1	CTD_human
APOC1	C1959583	Myocardial Failure	1	CTD_human
APOC1	C1961112	Heart Decompensation	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene