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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ABCB5 (CAeditome ID:340273)

Gene summary for ABCB5

check button Gene summary
Gene informationGene symbol

ABCB5

Gene ID

340273

Gene nameATP binding cassette subfamily B member 5
SynonymsABCB5alpha|ABCB5beta|EST422562
Cytomap

7p21.1

Type of geneprotein-coding
DescriptionATP-binding cassette sub-family B member 5ABCB5 P-gpATP-binding cassette proteinATP-binding cassette, sub-family B (MDR/TAP), member 5P-glycoprotein ABCB5
Modification date20210518
UniProtAcc

Q2M3G0

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ABCB5

GO:0015562

ATP-binding cassette sub-family B member 5

12960149

ABCB5

GO:0042391

ATP-binding cassette sub-family B member 5

12960149

ABCB5

GO:0055085

ATP-binding cassette sub-family B member 5

12960149

ABCB5

GO:0005887

ATP-binding cassette sub-family B member 5

12960149


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RNA A-to-I events for ABCB5

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000004846.15

check button RNA A-to-I editing events in Cancer.
CAediting_530521(20652312, +), CAediting_530522(20652313, +), CAediting_530523(20652423, +), CAediting_530524(20652472, +), CAediting_530525(20652476, +), CAediting_530526(20656983, +), CAediting_530527(20657021, +), CAediting_530528(20657034, +), CAediting_530529(20657048, +), CAediting_530530(20657075, +), CAediting_530531(20657098, +), CAediting_530532(20657109, +), CAediting_530533(20657161, +), CAediting_530534(20657183, +), CAediting_530535(20659783, +), CAediting_530536(20659784, +), CAediting_530537(20659813, +), CAediting_530538(20659823, +), CAediting_530539(20659841, +), CAediting_530540(20659845, +), CAediting_530541(20659849, +), CAediting_530542(20659850, +), CAediting_530543(20659858, +), CAediting_530544(20659864, +), CAediting_530545(20659874, +), CAediting_530546(20659904, +), CAediting_530547(20659905, +), CAediting_530548(20659958, +), CAediting_530549(20661597, +), CAediting_530550(20661634, +), CAediting_530551(20661635, +), CAediting_530552(20661638, +), CAediting_530553(20661664, +), CAediting_530554(20661674, +), CAediting_530555(20661715, +), CAediting_530556(20661795, +), CAediting_530557(20661807, +), CAediting_530558(20663755, +), CAediting_530559(20663771, +), CAediting_530560(20663777, +), CAediting_530561(20663785, +), CAediting_530562(20663815, +), CAediting_530563(20663816, +), CAediting_530564(20663845, +), CAediting_530565(20663857, +), CAediting_530566(20663873, +), CAediting_530567(20663902, +), CAediting_530568(20663925, +), CAediting_530569(20663950, +), CAediting_530570(20663951, +), CAediting_530571(20663952, +), CAediting_530572(20663959, +), CAediting_530573(20663976, +), CAediting_530574(20663978, +), CAediting_530575(20663990, +), CAediting_530576(20663996, +), CAediting_530577(20664012, +), CAediting_530578(20664834, +), CAediting_530579(20665875, +), CAediting_530580(20665876, +), CAediting_530581(20665878, +), CAediting_530582(20665879, +), CAediting_530583(20665881, +), CAediting_530584(20665906, +), CAediting_530585(20665914, +), CAediting_530586(20665915, +), CAediting_530587(20665920, +), CAediting_530588(20665923, +), CAediting_530589(20665931, +), CAediting_530590(20665941, +), CAediting_530591(20665950, +), CAediting_530592(20665954, +), CAediting_530593(20665955, +), CAediting_530594(20665960, +), CAediting_530595(20665963, +), CAediting_530596(20665969, +), CAediting_530597(20665971, +), CAediting_530598(20665974, +), CAediting_530599(20665994, +), CAediting_530600(20666005, +), CAediting_530601(20666008, +), CAediting_530602(20666009, +), CAediting_530603(20666010, +), CAediting_530604(20666011, +), CAediting_530605(20666012, +), CAediting_530606(20666014, +), CAediting_530607(20666016, +), CAediting_530608(20666017, +), CAediting_530609(20666018, +), CAediting_530610(20666019, +), CAediting_530611(20666020, +), CAediting_530612(20666023, +), CAediting_530613(20666039, +), CAediting_530614(20666041, +), CAediting_530615(20666049, +), CAediting_530616(20666050, +), CAediting_530617(20666059, +), CAediting_530618(20666064, +), CAediting_530619(20666066, +), CAediting_530620(20666076, +), CAediting_530621(20666081, +), CAediting_530622(20666082, +), CAediting_530623(20666090, +), CAediting_530624(20666091, +), CAediting_530625(20666095, +), CAediting_530626(20666098, +), CAediting_530627(20666115, +), CAediting_530628(20666120, +), CAediting_530629(20666122, +), CAediting_530630(20666149, +), CAediting_530631(20666159, +), CAediting_530632(20666160, +), CAediting_530633(20666161, +), CAediting_530634(20670654, +), CAediting_530635(20670655, +), CAediting_530636(20670676, +), CAediting_530637(20670714, +), CAediting_530638(20670728, +), CAediting_530639(20670746, +), CAediting_530640(20670754, +), CAediting_530641(20670762, +), CAediting_530642(20670788, +), CAediting_530643(20670794, +), CAediting_530644(20670918, +), CAediting_530645(20708397, +), CAediting_530646(20708405, +), CAediting_530647(20717572, +), CAediting_530648(20717582, +), CAediting_530649(20717619, +), CAediting_530650(20718751, +), CAediting_530651(20718779, +), CAediting_530652(20718792, +), CAediting_530653(20718804, +), CAediting_530654(20718807, +), CAediting_530655(20720203, +), CAediting_530656(20720204, +), CAediting_530657(20720232, +), CAediting_530658(20720233, +), CAediting_530659(20720244, +), CAediting_530660(20720245, +), CAediting_530661(20720247, +), CAediting_530662(20720248, +), CAediting_530663(20720255, +), CAediting_530664(20722591, +), CAediting_530665(20722595, +), CAediting_530666(20722675, +), CAediting_530667(20722702, +), CAediting_530668(20722716, +), CAediting_530669(20722729, +), CAediting_530670(20755123, +), CAediting_530671(20756393, +), CAediting_530672(20756433, +), CAediting_530673(20756457, +), CAediting_530674(20756467, +), CAediting_530675(20756522, +), CAediting_530676(20756523, +), CAediting_530677(20756528, +), CAediting_530678(20756532, +), CAediting_530679(20756554, +), CAediting_530680(20756558, +), CAediting_530681(20756575, +), CAediting_530682(20756593, +), CAediting_530683(20756600, +), CAediting_530684(20758429, +), CAediting_530685(20758430, +), CAediting_530686(20758484, +), CAediting_530687(20758673, +), CAediting_530688(20758681, +), CAediting_530689(20758699, +), CAediting_530690(20758751, +), CAediting_530691(20758759, +), CAediting_530692(20758790, +), CAediting_530693(20758816, +), CAediting_530694(20758830, +),

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RNA editing positional annotations for ABCB5 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_530521chr7_20652312_+intronic
CAediting_530522chr7_20652313_+intronic
CAediting_530523chr7_20652423_+intronic
CAediting_530524chr7_20652472_+intronic
CAediting_530525chr7_20652476_+intronic
CAediting_530526chr7_20656983_+intronic
CAediting_530527chr7_20657021_+intronic
CAediting_530528chr7_20657034_+intronic
CAediting_530529chr7_20657048_+intronic
CAediting_530530chr7_20657075_+intronic
CAediting_530531chr7_20657098_+intronic
CAediting_530532chr7_20657109_+intronic
CAediting_530533chr7_20657161_+intronic
CAediting_530534chr7_20657183_+intronic
CAediting_530535chr7_20659783_+UTR3
CAediting_530536chr7_20659784_+UTR3
CAediting_530537chr7_20659813_+UTR3
CAediting_530538chr7_20659823_+UTR3
CAediting_530539chr7_20659841_+UTR3
CAediting_530540chr7_20659845_+UTR3
CAediting_530541chr7_20659849_+UTR3
CAediting_530542chr7_20659850_+UTR3
CAediting_530543chr7_20659858_+UTR3
CAediting_530544chr7_20659864_+UTR3
CAediting_530545chr7_20659874_+UTR3
CAediting_530546chr7_20659904_+UTR3
CAediting_530547chr7_20659905_+UTR3
CAediting_530548chr7_20659958_+UTR3
CAediting_530549chr7_20661597_+intronic
CAediting_530550chr7_20661634_+intronic
CAediting_530551chr7_20661635_+intronic
CAediting_530552chr7_20661638_+intronic
CAediting_530553chr7_20661664_+intronic
CAediting_530554chr7_20661674_+intronic
CAediting_530555chr7_20661715_+intronic
CAediting_530556chr7_20661795_+intronic
CAediting_530557chr7_20661807_+intronic
CAediting_530558chr7_20663755_+intronic
CAediting_530559chr7_20663771_+intronic
CAediting_530560chr7_20663777_+intronic
CAediting_530561chr7_20663785_+intronic
CAediting_530562chr7_20663815_+intronic
CAediting_530563chr7_20663816_+intronic
CAediting_530564chr7_20663845_+intronic
CAediting_530565chr7_20663857_+intronic
CAediting_530566chr7_20663873_+intronic
CAediting_530567chr7_20663902_+intronic
CAediting_530568chr7_20663925_+intronic
CAediting_530569chr7_20663950_+intronic
CAediting_530570chr7_20663951_+intronic
CAediting_530571chr7_20663952_+intronic
CAediting_530572chr7_20663959_+intronic
CAediting_530573chr7_20663976_+intronic
CAediting_530574chr7_20663978_+intronic
CAediting_530575chr7_20663990_+intronic
CAediting_530576chr7_20663996_+intronic
CAediting_530577chr7_20664012_+intronic
CAediting_530578chr7_20664834_+intronic
CAediting_530579chr7_20665875_+intronic
CAediting_530580chr7_20665876_+intronic
CAediting_530581chr7_20665878_+intronic
CAediting_530582chr7_20665879_+intronic
CAediting_530583chr7_20665881_+intronic
CAediting_530584chr7_20665906_+intronic
CAediting_530585chr7_20665914_+intronic
CAediting_530586chr7_20665915_+intronic
CAediting_530587chr7_20665920_+intronic
CAediting_530588chr7_20665923_+intronic
CAediting_530589chr7_20665931_+intronic
CAediting_530590chr7_20665941_+intronic
CAediting_530591chr7_20665950_+intronic
CAediting_530592chr7_20665954_+intronic
CAediting_530593chr7_20665955_+intronic
CAediting_530594chr7_20665960_+intronic
CAediting_530595chr7_20665963_+intronic
CAediting_530596chr7_20665969_+intronic
CAediting_530597chr7_20665971_+intronic
CAediting_530598chr7_20665974_+intronic
CAediting_530599chr7_20665994_+intronic
CAediting_530600chr7_20666005_+intronic
CAediting_530601chr7_20666008_+intronic
CAediting_530602chr7_20666009_+intronic
CAediting_530603chr7_20666010_+intronic
CAediting_530604chr7_20666011_+intronic
CAediting_530605chr7_20666012_+intronic
CAediting_530606chr7_20666014_+intronic
CAediting_530607chr7_20666016_+intronic
CAediting_530608chr7_20666017_+intronic
CAediting_530609chr7_20666018_+intronic
CAediting_530610chr7_20666019_+intronic
CAediting_530611chr7_20666020_+intronic
CAediting_530612chr7_20666023_+intronic
CAediting_530613chr7_20666039_+intronic
CAediting_530614chr7_20666041_+intronic
CAediting_530615chr7_20666049_+intronic
CAediting_530616chr7_20666050_+intronic
CAediting_530617chr7_20666059_+intronic
CAediting_530618chr7_20666064_+intronic
CAediting_530619chr7_20666066_+intronic
CAediting_530620chr7_20666076_+intronic
CAediting_530621chr7_20666081_+intronic
CAediting_530622chr7_20666082_+intronic
CAediting_530623chr7_20666090_+intronic
CAediting_530624chr7_20666091_+intronic
CAediting_530625chr7_20666095_+intronic
CAediting_530626chr7_20666098_+intronic
CAediting_530627chr7_20666115_+intronic
CAediting_530628chr7_20666120_+intronic
CAediting_530629chr7_20666122_+intronic
CAediting_530630chr7_20666149_+intronic
CAediting_530631chr7_20666159_+intronic
CAediting_530632chr7_20666160_+intronic
CAediting_530633chr7_20666161_+intronic
CAediting_530634chr7_20670654_+intronic
CAediting_530635chr7_20670655_+intronic
CAediting_530636chr7_20670676_+intronic
CAediting_530637chr7_20670714_+intronic
CAediting_530638chr7_20670728_+intronic
CAediting_530639chr7_20670746_+intronic
CAediting_530640chr7_20670754_+intronic
CAediting_530641chr7_20670762_+intronic
CAediting_530642chr7_20670788_+intronic
CAediting_530643chr7_20670794_+intronic
CAediting_530644chr7_20670918_+intronic
CAediting_530645chr7_20708397_+intronic
CAediting_530646chr7_20708405_+intronic
CAediting_530647chr7_20717572_+intronic
CAediting_530648chr7_20717582_+intronic
CAediting_530649chr7_20717619_+intronic
CAediting_530650chr7_20718751_+intronic
CAediting_530651chr7_20718779_+intronic
CAediting_530652chr7_20718792_+intronic
CAediting_530653chr7_20718804_+intronic
CAediting_530654chr7_20718807_+intronic
CAediting_530655chr7_20720203_+intronic
CAediting_530656chr7_20720204_+intronic
CAediting_530657chr7_20720232_+intronic
CAediting_530658chr7_20720233_+intronic
CAediting_530659chr7_20720244_+intronic
CAediting_530660chr7_20720245_+intronic
CAediting_530661chr7_20720247_+intronic
CAediting_530662chr7_20720248_+intronic
CAediting_530663chr7_20720255_+intronic
CAediting_530664chr7_20722591_+intronic
CAediting_530665chr7_20722595_+intronic
CAediting_530666chr7_20722675_+intronic
CAediting_530667chr7_20722702_+intronic
CAediting_530668chr7_20722716_+intronic
CAediting_530669chr7_20722729_+intronic
CAediting_530670chr7_20755123_+intronic
CAediting_530671chr7_20756393_+UTR3
CAediting_530672chr7_20756433_+UTR3
CAediting_530673chr7_20756457_+UTR3
CAediting_530674chr7_20756467_+UTR3
CAediting_530675chr7_20756522_+UTR3
CAediting_530676chr7_20756523_+UTR3
CAediting_530677chr7_20756528_+UTR3
CAediting_530678chr7_20756532_+UTR3
CAediting_530679chr7_20756554_+UTR3
CAediting_530680chr7_20756558_+UTR3
CAediting_530681chr7_20756575_+UTR3
CAediting_530682chr7_20756593_+UTR3
CAediting_530683chr7_20756600_+UTR3
CAediting_530684chr7_20758429_+intronic
CAediting_530685chr7_20758430_+intronic
CAediting_530686chr7_20758484_+intronic
CAediting_530687chr7_20758673_+intronic
CAediting_530688chr7_20758681_+intronic
CAediting_530689chr7_20758699_+intronic
CAediting_530690chr7_20758751_+intronic
CAediting_530691chr7_20758759_+intronic
CAediting_530692chr7_20758790_+intronic
CAediting_530693chr7_20758816_+intronic
CAediting_530694chr7_20758830_+intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_530521chr7_20652312_+SINEAluAluSx
CAediting_530522chr7_20652313_+SINEAluAluSx
CAediting_530523chr7_20652423_+SINEAluAluSx
CAediting_530524chr7_20652472_+SINEAluAluSx
CAediting_530525chr7_20652476_+SINEAluAluSx
CAediting_530526chr7_20656983_+SINEAluAluJb
CAediting_530527chr7_20657021_+SINEAluAluJb
CAediting_530528chr7_20657034_+SINEAluAluJb
CAediting_530529chr7_20657048_+SINEAluAluJb
CAediting_530530chr7_20657075_+SINEAluAluJb
CAediting_530531chr7_20657098_+SINEAluAluJb
CAediting_530532chr7_20657109_+SINEAluAluJb
CAediting_530533chr7_20657161_+SINEAluAluJb
CAediting_530534chr7_20657183_+SINEAluAluJb
CAediting_530535chr7_20659783_+SINEAluAluSx
CAediting_530536chr7_20659784_+SINEAluAluSx
CAediting_530537chr7_20659813_+SINEAluAluSx
CAediting_530538chr7_20659823_+SINEAluAluSx
CAediting_530539chr7_20659841_+SINEAluAluSx
CAediting_530540chr7_20659845_+SINEAluAluSx
CAediting_530541chr7_20659849_+SINEAluAluSx
CAediting_530542chr7_20659850_+SINEAluAluSx
CAediting_530543chr7_20659858_+SINEAluAluSx
CAediting_530544chr7_20659864_+SINEAluAluSx
CAediting_530545chr7_20659874_+SINEAluAluSx
CAediting_530546chr7_20659904_+SINEAluAluSx
CAediting_530547chr7_20659905_+SINEAluAluSx
CAediting_530548chr7_20659958_+SINEAluAluSx
CAediting_530549chr7_20661597_+SINEAluAluSg
CAediting_530550chr7_20661634_+SINEAluAluSg
CAediting_530551chr7_20661635_+SINEAluAluSg
CAediting_530552chr7_20661638_+SINEAluAluSg
CAediting_530553chr7_20661664_+SINEAluAluSg
CAediting_530554chr7_20661674_+SINEAluAluSg
CAediting_530555chr7_20661715_+SINEAluAluSg
CAediting_530556chr7_20661795_+SINEAluAluSg
CAediting_530557chr7_20661807_+SINEAluAluSg
CAediting_530558chr7_20663755_+SINEAluAluSz
CAediting_530559chr7_20663771_+SINEAluAluSz
CAediting_530560chr7_20663777_+SINEAluAluSz
CAediting_530561chr7_20663785_+SINEAluAluSz
CAediting_530562chr7_20663815_+SINEAluAluSz
CAediting_530563chr7_20663816_+SINEAluAluSz
CAediting_530564chr7_20663845_+SINEAluAluSz
CAediting_530565chr7_20663857_+SINEAluAluSz
CAediting_530566chr7_20663873_+SINEAluAluSz
CAediting_530567chr7_20663902_+SINEAluAluSz
CAediting_530568chr7_20663925_+SINEAluAluSz
CAediting_530569chr7_20663950_+SINEAluAluSz
CAediting_530570chr7_20663951_+SINEAluAluSz
CAediting_530571chr7_20663952_+SINEAluAluSz
CAediting_530572chr7_20663959_+SINEAluAluSz
CAediting_530573chr7_20663976_+SINEAluAluSz
CAediting_530574chr7_20663978_+SINEAluAluSz
CAediting_530575chr7_20663990_+SINEAluAluSz
CAediting_530576chr7_20663996_+SINEAluAluSz
CAediting_530577chr7_20664012_+SINEAluAluSz
CAediting_530578chr7_20664834_+SINEAluFLAM_A
CAediting_530584chr7_20665906_+SINEAluAluSp
CAediting_530585chr7_20665914_+SINEAluAluSp
CAediting_530586chr7_20665915_+SINEAluAluSp
CAediting_530587chr7_20665920_+SINEAluAluSp
CAediting_530588chr7_20665923_+SINEAluAluSp
CAediting_530589chr7_20665931_+SINEAluAluSp
CAediting_530590chr7_20665941_+SINEAluAluSp
CAediting_530591chr7_20665950_+SINEAluAluSp
CAediting_530592chr7_20665954_+SINEAluAluSp
CAediting_530593chr7_20665955_+SINEAluAluSp
CAediting_530594chr7_20665960_+SINEAluAluSp
CAediting_530595chr7_20665963_+SINEAluAluSp
CAediting_530596chr7_20665969_+SINEAluAluSp
CAediting_530597chr7_20665971_+SINEAluAluSp
CAediting_530598chr7_20665974_+SINEAluAluSp
CAediting_530599chr7_20665994_+SINEAluAluSp
CAediting_530600chr7_20666005_+SINEAluAluSp
CAediting_530601chr7_20666008_+SINEAluAluSp
CAediting_530602chr7_20666009_+SINEAluAluSp
CAediting_530603chr7_20666010_+SINEAluAluSp
CAediting_530604chr7_20666011_+SINEAluAluSp
CAediting_530605chr7_20666012_+SINEAluAluSp
CAediting_530606chr7_20666014_+SINEAluAluSp
CAediting_530607chr7_20666016_+SINEAluAluSp
CAediting_530608chr7_20666017_+SINEAluAluSp
CAediting_530609chr7_20666018_+SINEAluAluSp
CAediting_530610chr7_20666019_+SINEAluAluSp
CAediting_530611chr7_20666020_+SINEAluAluSp
CAediting_530612chr7_20666023_+SINEAluAluSp
CAediting_530613chr7_20666039_+SINEAluAluSp
CAediting_530614chr7_20666041_+SINEAluAluSp
CAediting_530615chr7_20666049_+SINEAluAluSp
CAediting_530616chr7_20666050_+SINEAluAluSp
CAediting_530617chr7_20666059_+SINEAluAluSp
CAediting_530618chr7_20666064_+SINEAluAluSp
CAediting_530619chr7_20666066_+SINEAluAluSp
CAediting_530620chr7_20666076_+SINEAluAluSp
CAediting_530621chr7_20666081_+SINEAluAluSp
CAediting_530622chr7_20666082_+SINEAluAluSp
CAediting_530623chr7_20666090_+SINEAluAluSp
CAediting_530624chr7_20666091_+SINEAluAluSp
CAediting_530625chr7_20666095_+SINEAluAluSp
CAediting_530626chr7_20666098_+SINEAluAluSp
CAediting_530627chr7_20666115_+SINEAluAluSp
CAediting_530628chr7_20666120_+SINEAluAluSp
CAediting_530629chr7_20666122_+SINEAluAluSp
CAediting_530630chr7_20666149_+SINEAluAluSp
CAediting_530631chr7_20666159_+SINEAluAluSp
CAediting_530632chr7_20666160_+SINEAluAluSp
CAediting_530633chr7_20666161_+SINEAluAluSp
CAediting_530634chr7_20670654_+SINEAluAluSp
CAediting_530635chr7_20670655_+SINEAluAluSp
CAediting_530636chr7_20670676_+SINEAluAluSp
CAediting_530637chr7_20670714_+SINEAluAluSp
CAediting_530638chr7_20670728_+SINEAluAluSp
CAediting_530639chr7_20670746_+SINEAluAluSp
CAediting_530640chr7_20670754_+SINEAluAluSp
CAediting_530641chr7_20670762_+SINEAluAluSp
CAediting_530642chr7_20670788_+SINEAluAluSp
CAediting_530643chr7_20670794_+SINEAluAluSp
CAediting_530644chr7_20670918_+SINEAluAluSp
CAediting_530645chr7_20708397_+SINEAluAluJb
CAediting_530646chr7_20708405_+SINEAluAluJb
CAediting_530647chr7_20717572_+SINEAluAluSg
CAediting_530648chr7_20717582_+SINEAluAluSg
CAediting_530649chr7_20717619_+SINEAluAluSg
CAediting_530651chr7_20718779_+LINEL1L1MC4
CAediting_530652chr7_20718792_+LINEL1L1MC4
CAediting_530653chr7_20718804_+LINEL1L1MC4
CAediting_530654chr7_20718807_+LINEL1L1MC4
CAediting_530655chr7_20720203_+LINEL1L1MC4
CAediting_530656chr7_20720204_+LINEL1L1MC4
CAediting_530657chr7_20720232_+LINEL1L1MC4
CAediting_530658chr7_20720233_+LINEL1L1MC4
CAediting_530659chr7_20720244_+LINEL1L1MC4
CAediting_530660chr7_20720245_+LINEL1L1MC4
CAediting_530661chr7_20720247_+LINEL1L1MC4
CAediting_530662chr7_20720248_+LINEL1L1MC4
CAediting_530663chr7_20720255_+LINEL1L1MC4
CAediting_530664chr7_20722591_+SINEAluAluSx1
CAediting_530665chr7_20722595_+SINEAluAluSx1
CAediting_530666chr7_20722675_+SINEAluAluSx1
CAediting_530667chr7_20722702_+SINEAluAluSx1
CAediting_530668chr7_20722716_+SINEAluAluSx1
CAediting_530669chr7_20722729_+SINEAluAluSx1
CAediting_530670chr7_20755123_+SINEAluAluSq2
CAediting_530671chr7_20756393_+SINEAluAluSx1
CAediting_530672chr7_20756433_+SINEAluAluSx1
CAediting_530673chr7_20756457_+SINEAluAluSx1
CAediting_530674chr7_20756467_+SINEAluAluSx1
CAediting_530675chr7_20756522_+SINEAluAluSx1
CAediting_530676chr7_20756523_+SINEAluAluSx1
CAediting_530677chr7_20756528_+SINEAluAluSx1
CAediting_530678chr7_20756532_+SINEAluAluSx1
CAediting_530679chr7_20756554_+SINEAluAluSx1
CAediting_530680chr7_20756558_+SINEAluAluSx1
CAediting_530681chr7_20756575_+SINEAluAluSx1
CAediting_530682chr7_20756593_+SINEAluAluSx1
CAediting_530683chr7_20756600_+SINEAluAluSx1
CAediting_530684chr7_20758429_+SINEAluAluSg
CAediting_530685chr7_20758430_+SINEAluAluSg
CAediting_530686chr7_20758484_+SINEAluAluSg
CAediting_530687chr7_20758673_+SINEAluAluSz
CAediting_530688chr7_20758681_+SINEAluAluSz
CAediting_530689chr7_20758699_+SINEAluAluSz
CAediting_530690chr7_20758751_+SINEAluAluSz
CAediting_530691chr7_20758759_+SINEAluAluSz
CAediting_530692chr7_20758790_+SINEAluAluSz
CAediting_530693chr7_20758816_+SINEAluAluSz
CAediting_530694chr7_20758830_+SINEAluAluSz

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RNA A-to-I editing events in the alternative splicing sites for ABCB5

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000004846.15.ABCB5.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000004846.15.ABCB5.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ABCB5

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
SKCM.CAediting_530603.ENSG00000004846.ABCB5.png
Soverview
SKCM.CAediting_530617.ENSG00000004846.ABCB5.png
Soverview

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Protein coding region RNA A-to-I editings for ABCB5

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ABCB5

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_530536chr7_20659784_+ENSG00000004846.15ENST00000443026hsa-miR-607820659780206597878mer-1a2065976920659787149.00-23.20
CAediting_530537chr7_20659813_+ENSG00000004846.15ENST00000443026hsa-miR-4691-3p20659810206598167mer-m82065979020659817150.00-26.36
CAediting_530538chr7_20659823_+ENSG00000004846.15ENST00000443026hsa-miR-4793-3p20659819206598257mer-m82065980420659826153.00-24.63
CAediting_530538chr7_20659823_+ENSG00000004846.15ENST00000443026hsa-miR-770320659818206598247mer-m82065980320659825158.00-22.64
CAediting_530539chr7_20659841_+ENSG00000004846.15ENST00000443026hsa-miR-1268a20659837206598448mer-1a2065982720659844166.00-28.93
CAediting_530539chr7_20659841_+ENSG00000004846.15ENST00000443026hsa-miR-1268b20659837206598448mer-1a2065982520659844166.00-31.00
CAediting_530539chr7_20659841_+ENSG00000004846.15ENST00000443026hsa-miR-448620659839206598457mer-m82065983120659846149.00-23.62
CAediting_530541chr7_20659849_+ENSG00000004846.15ENST00000443026hsa-miR-1207-3p20659842206598498mer-1a2065983220659849140.00-14.68
CAediting_530541chr7_20659849_+ENSG00000004846.15ENST00000443026hsa-miR-34a-3p20659845206598517mer-m82065983020659852141.00-8.12
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-4661-5p20659844206598507mer-m82065982920659851151.00-18.50
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548ae-3p20659848206598547mer-m82065983520659855141.00-10.48
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548ae-3p20659848206598547mer-m82065983520659855141.00-10.48
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548ah-3p20659848206598547mer-m82065983320659855143.00-10.48
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548aj-3p20659848206598547mer-m82065983520659855141.00-8.37
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548aj-3p20659848206598547mer-m82065983520659855141.00-8.37
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548am-3p20659848206598547mer-m82065983320659855143.00-10.48
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548aq-3p20659848206598547mer-m82065983420659855141.00-10.48
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548j-3p20659848206598547mer-m82065983520659855141.00-10.48
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548x-3p20659848206598547mer-m82065983620659855141.00-8.37
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-548x-3p20659848206598547mer-m82065983620659855141.00-8.37
CAediting_530542chr7_20659850_+ENSG00000004846.15ENST00000443026hsa-miR-7844-5p20659846206598527mer-m82065983220659853168.00-23.46
CAediting_530545chr7_20659874_+ENSG00000004846.15ENST00000443026hsa-miR-10a-5p20659870206598767mer-m82065985520659877145.00-13.67
CAediting_530545chr7_20659874_+ENSG00000004846.15ENST00000443026hsa-miR-10b-5p20659870206598767mer-m82065985520659877140.00-13.05
CAediting_530545chr7_20659874_+ENSG00000004846.15ENST00000443026hsa-miR-339-5p20659869206598757mer-m82065985220659876151.00-18.58
CAediting_530545chr7_20659874_+ENSG00000004846.15ENST00000443026hsa-miR-442120659868206598747mer-m82065985420659875154.00-16.19
CAediting_530545chr7_20659874_+ENSG00000004846.15ENST00000443026hsa-miR-5699-3p20659868206598747mer-m82065985420659875153.00-17.34
CAediting_530545chr7_20659874_+ENSG00000004846.15ENST00000443026hsa-miR-6732-3p20659871206598777mer-m82065985720659878158.00-19.01
CAediting_530547chr7_20659905_+ENSG00000004846.15ENST00000443026hsa-miR-1211920659900206599056mer2065987920659906141.00-18.09
CAediting_530547chr7_20659905_+ENSG00000004846.15ENST00000443026hsa-miR-429420659903206599097mer-m82065989320659910150.00-18.29
CAediting_530547chr7_20659905_+ENSG00000004846.15ENST00000443026hsa-miR-432920659898206599058mer-1a2065988520659905147.00-14.90
CAediting_530548chr7_20659958_+ENSG00000004846.15ENST00000443026hsa-miR-106a-3p20659954206599596mer2065993920659960141.00-21.13
CAediting_530671chr7_20756393_+ENSG00000004846.15ENST00000404938hsa-miR-449720756388207563958mer-1a2075637920756395147.00-20.27
CAediting_530674chr7_20756467_+ENSG00000004846.15ENST00000404938hsa-miR-412-3p20756460207564667mer-m82075644520756467153.00-17.30
CAediting_530674chr7_20756467_+ENSG00000004846.15ENST00000404938hsa-miR-450820756465207564717mer-m82075645620756472140.00-21.85
CAediting_530674chr7_20756467_+ENSG00000004846.15ENST00000404938hsa-miR-6754-3p20756460207564667mer-m82075644720756467144.00-15.76
CAediting_530675chr7_20756522_+ENSG00000004846.15ENST00000404938hsa-miR-4713-3p20756520207565278mer-1a2075650520756527141.00-20.65
CAediting_530675chr7_20756522_+ENSG00000004846.15ENST00000404938hsa-miR-4726-3p20756515207565228mer-1a2075650120756522158.00-28.02
CAediting_530676chr7_20756523_+ENSG00000004846.15ENST00000404938hsa-miR-365b-5p20756521207565277mer-1a2075650720756527142.00-23.60
CAediting_530676chr7_20756523_+ENSG00000004846.15ENST00000404938hsa-miR-508-5p20756517207565237mer-m82075650120756524156.00-23.69
CAediting_530678chr7_20756532_+ENSG00000004846.15ENST00000404938hsa-miR-1207-3p20756525207565317mer-m82075651520756532141.00-13.22
CAediting_530678chr7_20756532_+ENSG00000004846.15ENST00000404938hsa-miR-64620756527207565337mer-m82075651620756534145.00-18.24
CAediting_530681chr7_20756575_+ENSG00000004846.15ENST00000404938hsa-miR-128120756568207565747mer-m82075655920756575145.00-17.98
CAediting_530673chr7_20756457_+ENSG00000004846.15ENST00000404938hsa-miR-3190-5p20756450207564567mer-m82075643820756457154.00-19.64

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_530671chr7_20756393_+ENSG00000004846.15ENST00000404938hsa-miR-148b-5p20756391207563977mer-m82075637620756398150-17.13
CAediting_530674chr7_20756467_+ENSG00000004846.15ENST00000404938hsa-miR-193b-5p20756464207564707mer-m82075645020756471142-20.42
CAediting_530671chr7_20756393_+ENSG00000004846.15ENST00000404938hsa-miR-431420756388207563958mer-1a2075637720756395145-15.11
CAediting_530682chr7_20756593_+ENSG00000004846.15ENST00000404938hsa-miR-4638-5p20756587207565948mer-1a2075657520756594146-20.28
CAediting_530673chr7_20756457_+ENSG00000004846.15ENST00000404938hsa-miR-4716-5p20756455207564617mer-m82075644120756462140-11.3
CAediting_530673chr7_20756457_+ENSG00000004846.15ENST00000404938hsa-miR-4781-3p20756453207564597mer-m82075644220756460144-13.86
CAediting_530681chr7_20756575_+ENSG00000004846.15ENST00000404938hsa-miR-5001-3p20756570207565767mer-m82075655320756577153-21.76
CAediting_530671chr7_20756393_+ENSG00000004846.15ENST00000404938hsa-miR-5089-5p20756386207563927mer-m82075637120756393148-14.13
CAediting_530676chr7_20756523_+ENSG00000004846.15ENST00000404938hsa-miR-5089-5p20756521207565277mer-m82075651020756528150-17.78
CAediting_530677chr7_20756528_+ENSG00000004846.15ENST00000404938hsa-miR-5089-5p20756521207565277mer-m82075651020756528150-17.78
CAediting_530678chr7_20756532_+ENSG00000004846.15ENST00000404938hsa-miR-56220756528207565347mer-m82075651620756535150-14.04
CAediting_530678chr7_20756532_+ENSG00000004846.15ENST00000404938hsa-miR-569720756529207565357mer-m82075651520756536146-18.33
CAediting_530671chr7_20756393_+ENSG00000004846.15ENST00000404938hsa-miR-6506-5p20756387207563948mer-1a2075637220756394144-13.79
CAediting_530677chr7_20756528_+ENSG00000004846.15ENST00000404938hsa-miR-6506-5p20756522207565287mer-m82075650720756529148-16.64
CAediting_530681chr7_20756575_+ENSG00000004846.15ENST00000404938hsa-miR-6836-3p20756568207565747mer-m82075655520756575140-15.17
CAediting_530671chr7_20756393_+ENSG00000004846.15ENST00000404938hsa-miR-6874-3p20756391207563977mer-m82075637620756398145-8.71
CAediting_530682chr7_20756593_+ENSG00000004846.15ENST00000404938hsa-miR-7161-3p20756592207565976mer2075657120756598153-24.45
CAediting_530683chr7_20756600_+ENSG00000004846.15ENST00000404938hsa-miR-7855-5p20756596207566027mer-m82075658420756603149-21.03
CAediting_530543chr7_20659858_+ENSG00000004846.15ENST00000443026hsa-miR-381-3p20659853206598586mer2065983820659859140-12.93
CAediting_530539chr7_20659841_+ENSG00000004846.15ENST00000443026hsa-miR-445520659837206598448mer-1a2065982920659844148-17.17
CAediting_530537chr7_20659813_+ENSG00000004846.15ENST00000443026hsa-miR-569020659810206598167mer-m82065979720659817145-17.72
CAediting_530539chr7_20659841_+ENSG00000004846.15ENST00000443026hsa-miR-6776-5p20659839206598457mer-m82065982820659846152-19.89
CAediting_530540chr7_20659845_+ENSG00000004846.15ENST00000443026hsa-miR-6776-5p20659839206598457mer-m82065982820659846152-19.89
CAediting_530538chr7_20659823_+ENSG00000004846.15ENST00000443026hsa-miR-6811-3p20659822206598276mer2065980820659828143-22.67

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_688081chr9_63819627_+ENSG00000004846.15ENST00000404938hsa-miR-4477b20756895207569028mer-1a2075688020756902151-10.61
CAediting_688081chr9_63819627_+ENSG00000004846.15ENST00000406935hsa-miR-4477b20666847206668537mer-m82066683220666854162-15.07
CAediting_688081chr9_63819627_+ENSG00000004846.15ENST00000441315hsa-miR-4477b20763438207634458mer-1a2076342720763445145-12.37
CAediting_117844chr1_162342605_+ENSG00000004846.15ENST00000443026hsa-miR-556-3p20660264206602707mer-m82066025020660271148-10.58
CAediting_396018chr5_1062918_-ENSG00000004846.15ENST00000443026hsa-miR-463520659200206592067mer-m82065918720659207145-16.52
CAediting_1368054chr19_46709310_-ENSG00000004846.15ENST00000441315hsa-miR-320e20763459207634657mer-1a2076344820763465142-17.26

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000004846.15ENST00000404938hsa-miR-130320756137207561448mer-1a2075612220756144147-13.28
CAediting_1160181chr17_7017644_-ENSG00000004846.15ENST00000404938hsa-miR-195-3p20756784207567907mer-m82075677020756791145-13.83
CAediting_414656chr5_72878640_+ENSG00000004846.15ENST00000443026hsa-miR-4804-3p20659386206593927mer-m82065937420659393149-12.88
CAediting_468389chr6_31355314_-ENSG00000004846.15ENST00000441315hsa-miR-6891-5p20776816207768227mer-m82077680520776823145-16.21

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ABCB5

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000404938.5protein_codingSoverviewSoverview
ENST00000443026.5protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_530671ENST00000404938.5chr7_20756393_+-1573.90-1573.70-1591.30
CAediting_530672ENST00000404938.5chr7_20756433_+-1573.00-1573.70-1591.30
CAediting_530673ENST00000404938.5chr7_20756457_+-1574.10-1573.70-1591.30
CAediting_530674ENST00000404938.5chr7_20756467_+-1573.70-1573.70-1591.30
CAediting_530675ENST00000404938.5chr7_20756522_+-1573.70-1573.70-1591.30
CAediting_530676ENST00000404938.5chr7_20756523_+-1573.70-1573.70-1591.30
CAediting_530677ENST00000404938.5chr7_20756528_+-1573.70-1573.70-1591.30
CAediting_530678ENST00000404938.5chr7_20756532_+-1573.90-1573.70-1591.30
CAediting_530679ENST00000404938.5chr7_20756554_+-1574.00-1573.70-1591.30
CAediting_530680ENST00000404938.5chr7_20756558_+-1577.10-1573.70-1591.30
CAediting_530681ENST00000404938.5chr7_20756575_+-1577.90-1573.70-1591.30
CAediting_530682ENST00000404938.5chr7_20756593_+-1573.20-1573.70-1591.30
CAediting_530683ENST00000404938.5chr7_20756600_+-1577.40-1573.70-1591.30
CAediting_530535ENST00000443026.5chr7_20659783_+-588.30-585.10-600.80
CAediting_530536ENST00000443026.5chr7_20659784_+-587.40-585.10-600.80
CAediting_530537ENST00000443026.5chr7_20659813_+-584.90-585.10-600.80
CAediting_530538ENST00000443026.5chr7_20659823_+-586.40-585.10-600.80
CAediting_530539ENST00000443026.5chr7_20659841_+-586.50-585.10-600.80
CAediting_530540ENST00000443026.5chr7_20659845_+-584.40-585.10-600.80
CAediting_530541ENST00000443026.5chr7_20659849_+-584.80-585.10-600.80
CAediting_530542ENST00000443026.5chr7_20659850_+-586.10-585.10-600.80
CAediting_530543ENST00000443026.5chr7_20659858_+-585.10-585.10-600.80
CAediting_530544ENST00000443026.5chr7_20659864_+-587.80-585.10-600.80
CAediting_530545ENST00000443026.5chr7_20659874_+-585.30-585.10-600.80
CAediting_530546ENST00000443026.5chr7_20659904_+-585.10-585.10-600.80
CAediting_530547ENST00000443026.5chr7_20659905_+-587.10-585.10-600.80
CAediting_530548ENST00000443026.5chr7_20659958_+-585.10-585.10-600.80

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Relation with ADAR for ABCB5

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
SKCMCAediting_530585chr7_20665914_+2.31069120094624e-070.342431815267505....
UVMCAediting_530585chr7_20665914_+0.04143666814919550.242677661919978....
SKCMCAediting_530587chr7_20665920_+0.0416694004617120.167093954457364....
SKCMCAediting_530592chr7_20665954_+0.04114321926993850.164771757283114....
SKCMCAediting_530593chr7_20665955_+0.005332246720988260.214064139908512....
SKCMCAediting_530606chr7_20666014_+0.004046639516433590.221332586473747....
SKCMCAediting_530608chr7_20666017_+0.01680644781236930.1924290156079....
SKCMCAediting_530610chr7_20666019_+0.02868957850614710.176344761449665....
SKCMCAediting_530612chr7_20666023_+..5.86221473793241e-060.400399068542096..
SKCMCAediting_530615chr7_20666049_+..0.04410511289228580.25658687650263..
SKCMCAediting_530616chr7_20666050_+0.0001401172907379120.272103380571886....
SKCMCAediting_530617chr7_20666059_+0.001858256846210360.19786088707202....

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Relation with cancer stages for ABCB5

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
SKCMpathologic_stageCAediting_530602chr7_20666009_+0.04516390456331990.181712263898982
SKCMpathologic_stageCAediting_530605chr7_20666012_+0.0207228065670090.252056020311075
UVMclinical_stageCAediting_530593chr7_20665955_+0.02903451339464970.273050450296216
UVMpathologic_stageCAediting_530604chr7_20666011_+0.03552924539796860.292239459889837

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Relation with survival for ABCB5

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
UVMCAediting_530606chr7_20666014_+0.007490509378832890.02228175.70773e-06
UVMCAediting_530617chr7_20666059_+0.009525524793742140.001351820.000134124

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RelatedDrugs for ABCB5

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ABCB5

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
ABCB5C0009402Colorectal Carcinoma1CTD_human;UNIPROT
ABCB5C0009404Colorectal Neoplasms1CTD_human
ABCB5C0025202melanoma1CTD_human