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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: BRINP3 (CAeditome ID:339479)

Gene summary for BRINP3

check button Gene summary
Gene informationGene symbol

BRINP3

Gene ID

339479

Gene nameBMP/retinoic acid inducible neural specific 3
SynonymsDBCCR1L|DBCCR1L1|FAM5C
Cytomap

1q31.1

Type of geneprotein-coding
DescriptionBMP/retinoic acid-inducible neural-specific protein 3DBCCR1-like protein 1bone morphogenetic protein/retinoic acid inducible neural-specific 3family with sequence similarity 5, member Cprotein FAM5C
Modification date20210518
UniProtAcc

Q76B58

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for BRINP3

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000162670.9

check button RNA A-to-I editing events in Cancer.
CAediting_127791(190141763, -), CAediting_127792(190141824, -), CAediting_127793(190141837, -), CAediting_127794(190177261, -), CAediting_127795(190199218, -), CAediting_127796(190200677, -), CAediting_127797(190201315, -), CAediting_127798(190373896, -), CAediting_127799(190402969, -), CAediting_127800(190403013, -), CAediting_127801(190406408, -), CAediting_127802(190406420, -), CAediting_127803(190406483, -), CAediting_127804(190406493, -), CAediting_127805(190406508, -), CAediting_127806(190406510, -), CAediting_127807(190406519, -), CAediting_127808(190406527, -), CAediting_127809(190406530, -), CAediting_127810(190406531, -), CAediting_127811(190406533, -), CAediting_127812(190406538, -), CAediting_127813(190406546, -), CAediting_127814(190406557, -), CAediting_127815(190406562, -), CAediting_127816(190406572, -), CAediting_127817(190407026, -), CAediting_127818(190407034, -), CAediting_127819(190407037, -), CAediting_127820(190407044, -), CAediting_127821(190407052, -), CAediting_127822(190407056, -), CAediting_127823(190407073, -), CAediting_127824(190407087, -), CAediting_127825(190407088, -), CAediting_127826(190407089, -), CAediting_127827(190407090, -), CAediting_127828(190407104, -), CAediting_127829(190407105, -), CAediting_127830(190407112, -), CAediting_127831(190407156, -), CAediting_127832(190409236, -), CAediting_127833(190415778, -), CAediting_127834(190415791, -), CAediting_127835(190428176, -), CAediting_127836(190442938, -), CAediting_127837(190442998, -), CAediting_127838(190443041, -), CAediting_127839(190443051, -), CAediting_127840(190443053, -), CAediting_127841(190443077, -), CAediting_127842(190443988, -), CAediting_127843(190443998, -), CAediting_127844(190444067, -), CAediting_127845(190444083, -), CAediting_127846(190444084, -), CAediting_127847(190444121, -), CAediting_127848(190444133, -), CAediting_127849(190444659, -), CAediting_127850(190452614, -), CAediting_127851(190452615, -), CAediting_127852(190452641, -), CAediting_127853(190452655, -), CAediting_127854(190452690, -), CAediting_127855(190452699, -), CAediting_127856(190452707, -), CAediting_127857(190452708, -), CAediting_127858(190452712, -), CAediting_127859(190452735, -), CAediting_127860(190452740, -), CAediting_127861(190452745, -), CAediting_127862(190452770, -), CAediting_127863(190452774, -), CAediting_127864(190452813, -), CAediting_127865(190452819, -), CAediting_127866(190452832, -), CAediting_127867(190452835, -), CAediting_127868(190453293, -), CAediting_127869(190453325, -), CAediting_127870(190453326, -), CAediting_127871(190453359, -), CAediting_127872(190453385, -), CAediting_127873(190453388, -), CAediting_127874(190453389, -), CAediting_127875(190453390, -), CAediting_127876(190453391, -), CAediting_127877(190453392, -), CAediting_127878(190453394, -), CAediting_127879(190453396, -), CAediting_127880(190453397, -), CAediting_127881(190453398, -), CAediting_127882(190453403, -), CAediting_127883(190453414, -), CAediting_127884(190453437, -), CAediting_127885(190453445, -), CAediting_127886(190453446, -), CAediting_127887(190453451, -), CAediting_127888(190462193, -),

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RNA editing positional annotations for BRINP3 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_127791chr1_190141763_-intronic
CAediting_127792chr1_190141824_-intronic
CAediting_127793chr1_190141837_-intronic
CAediting_127794chr1_190177261_-intronic
CAediting_127795chr1_190199218_-intronic
CAediting_127796chr1_190200677_-intronic
CAediting_127797chr1_190201315_-intronic
CAediting_127798chr1_190373896_-intronic
CAediting_127799chr1_190402969_-intronic
CAediting_127800chr1_190403013_-intronic
CAediting_127801chr1_190406408_-intronic
CAediting_127802chr1_190406420_-intronic
CAediting_127803chr1_190406483_-intronic
CAediting_127804chr1_190406493_-intronic
CAediting_127805chr1_190406508_-intronic
CAediting_127806chr1_190406510_-intronic
CAediting_127807chr1_190406519_-intronic
CAediting_127808chr1_190406527_-intronic
CAediting_127809chr1_190406530_-intronic
CAediting_127810chr1_190406531_-intronic
CAediting_127811chr1_190406533_-intronic
CAediting_127812chr1_190406538_-intronic
CAediting_127813chr1_190406546_-intronic
CAediting_127814chr1_190406557_-intronic
CAediting_127815chr1_190406562_-intronic
CAediting_127816chr1_190406572_-intronic
CAediting_127817chr1_190407026_-intronic
CAediting_127818chr1_190407034_-intronic
CAediting_127819chr1_190407037_-intronic
CAediting_127820chr1_190407044_-intronic
CAediting_127821chr1_190407052_-intronic
CAediting_127822chr1_190407056_-intronic
CAediting_127823chr1_190407073_-intronic
CAediting_127824chr1_190407087_-intronic
CAediting_127825chr1_190407088_-intronic
CAediting_127826chr1_190407089_-intronic
CAediting_127827chr1_190407090_-intronic
CAediting_127828chr1_190407104_-intronic
CAediting_127829chr1_190407105_-intronic
CAediting_127830chr1_190407112_-intronic
CAediting_127831chr1_190407156_-intronic
CAediting_127832chr1_190409236_-intronic
CAediting_127833chr1_190415778_-intronic
CAediting_127834chr1_190415791_-intronic
CAediting_127835chr1_190428176_-intronic
CAediting_127836chr1_190442938_-intronic
CAediting_127837chr1_190442998_-intronic
CAediting_127838chr1_190443041_-intronic
CAediting_127839chr1_190443051_-intronic
CAediting_127840chr1_190443053_-intronic
CAediting_127841chr1_190443077_-intronic
CAediting_127842chr1_190443988_-intronic
CAediting_127843chr1_190443998_-intronic
CAediting_127844chr1_190444067_-intronic
CAediting_127845chr1_190444083_-intronic
CAediting_127846chr1_190444084_-intronic
CAediting_127847chr1_190444121_-intronic
CAediting_127848chr1_190444133_-intronic
CAediting_127849chr1_190444659_-intronic
CAediting_127850chr1_190452614_-intronic
CAediting_127851chr1_190452615_-intronic
CAediting_127852chr1_190452641_-intronic
CAediting_127853chr1_190452655_-intronic
CAediting_127854chr1_190452690_-intronic
CAediting_127855chr1_190452699_-intronic
CAediting_127856chr1_190452707_-intronic
CAediting_127857chr1_190452708_-intronic
CAediting_127858chr1_190452712_-intronic
CAediting_127859chr1_190452735_-intronic
CAediting_127860chr1_190452740_-intronic
CAediting_127861chr1_190452745_-intronic
CAediting_127862chr1_190452770_-intronic
CAediting_127863chr1_190452774_-intronic
CAediting_127864chr1_190452813_-intronic
CAediting_127865chr1_190452819_-intronic
CAediting_127866chr1_190452832_-intronic
CAediting_127867chr1_190452835_-intronic
CAediting_127868chr1_190453293_-intronic
CAediting_127869chr1_190453325_-intronic
CAediting_127870chr1_190453326_-intronic
CAediting_127871chr1_190453359_-intronic
CAediting_127872chr1_190453385_-intronic
CAediting_127873chr1_190453388_-intronic
CAediting_127874chr1_190453389_-intronic
CAediting_127875chr1_190453390_-intronic
CAediting_127876chr1_190453391_-intronic
CAediting_127877chr1_190453392_-intronic
CAediting_127878chr1_190453394_-intronic
CAediting_127879chr1_190453396_-intronic
CAediting_127880chr1_190453397_-intronic
CAediting_127881chr1_190453398_-intronic
CAediting_127882chr1_190453403_-intronic
CAediting_127883chr1_190453414_-intronic
CAediting_127884chr1_190453437_-intronic
CAediting_127885chr1_190453445_-intronic
CAediting_127886chr1_190453446_-intronic
CAediting_127887chr1_190453451_-intronic
CAediting_127888chr1_190462193_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_127791chr1_190141763_-SINEAluAluSg
CAediting_127792chr1_190141824_-SINEAluAluSg
CAediting_127793chr1_190141837_-SINEAluAluSg
CAediting_127794chr1_190177261_-SINEAluAluY
CAediting_127795chr1_190199218_-LTRERVL-MaLRTHE1B
CAediting_127796chr1_190200677_-LTRERVL-MaLRTHE1B
CAediting_127797chr1_190201315_-LTRERVL-MaLRTHE1B-int
CAediting_127799chr1_190402969_-SINEAluAluJb
CAediting_127800chr1_190403013_-SINEAluAluJb
CAediting_127801chr1_190406408_-LINERTE-XL4_C_Mam
CAediting_127802chr1_190406420_-LINERTE-XL4_C_Mam
CAediting_127803chr1_190406483_-LINERTE-XL4_C_Mam
CAediting_127804chr1_190406493_-LINERTE-XL4_C_Mam
CAediting_127805chr1_190406508_-LINERTE-XL4_C_Mam
CAediting_127806chr1_190406510_-LINERTE-XL4_C_Mam
CAediting_127807chr1_190406519_-LINERTE-XL4_C_Mam
CAediting_127808chr1_190406527_-LINERTE-XL4_C_Mam
CAediting_127809chr1_190406530_-LINERTE-XL4_C_Mam
CAediting_127810chr1_190406531_-LINERTE-XL4_C_Mam
CAediting_127811chr1_190406533_-LINERTE-XL4_C_Mam
CAediting_127812chr1_190406538_-LINERTE-XL4_C_Mam
CAediting_127813chr1_190406546_-LINERTE-XL4_C_Mam
CAediting_127814chr1_190406557_-LINERTE-XL4_C_Mam
CAediting_127815chr1_190406562_-LINERTE-XL4_C_Mam
CAediting_127816chr1_190406572_-LINERTE-XL4_C_Mam
CAediting_127817chr1_190407026_-LINERTE-XL4_C_Mam
CAediting_127818chr1_190407034_-LINERTE-XL4_C_Mam
CAediting_127819chr1_190407037_-LINERTE-XL4_C_Mam
CAediting_127820chr1_190407044_-LINERTE-XL4_C_Mam
CAediting_127821chr1_190407052_-LINERTE-XL4_C_Mam
CAediting_127822chr1_190407056_-LINERTE-XL4_C_Mam
CAediting_127823chr1_190407073_-LINERTE-XL4_C_Mam
CAediting_127824chr1_190407087_-LINERTE-XL4_C_Mam
CAediting_127825chr1_190407088_-LINERTE-XL4_C_Mam
CAediting_127826chr1_190407089_-LINERTE-XL4_C_Mam
CAediting_127827chr1_190407090_-LINERTE-XL4_C_Mam
CAediting_127828chr1_190407104_-LINERTE-XL4_C_Mam
CAediting_127829chr1_190407105_-LINERTE-XL4_C_Mam
CAediting_127830chr1_190407112_-LINERTE-XL4_C_Mam
CAediting_127831chr1_190407156_-LINERTE-XL4_C_Mam
CAediting_127832chr1_190409236_-SINEAluFLAM_C
CAediting_127833chr1_190415778_-SINEAluAluJr
CAediting_127834chr1_190415791_-SINEAluAluJr
CAediting_127836chr1_190442938_-SINEAluAluSq2
CAediting_127837chr1_190442998_-SINEAluAluSq2
CAediting_127838chr1_190443041_-SINEAluAluSq2
CAediting_127839chr1_190443051_-SINEAluAluSq2
CAediting_127840chr1_190443053_-SINEAluAluSq2
CAediting_127841chr1_190443077_-SINEAluAluSq2
CAediting_127842chr1_190443988_-SINEAluAluSp
CAediting_127843chr1_190443998_-SINEAluAluSp
CAediting_127844chr1_190444067_-SINEAluAluSp
CAediting_127845chr1_190444083_-SINEAluAluSp
CAediting_127846chr1_190444084_-SINEAluAluSp
CAediting_127847chr1_190444121_-SINEAluAluSp
CAediting_127848chr1_190444133_-SINEAluAluSp
CAediting_127849chr1_190444659_-SINEAluAluSg
CAediting_127850chr1_190452614_-SINEAluAluSx1
CAediting_127851chr1_190452615_-SINEAluAluSx1
CAediting_127852chr1_190452641_-SINEAluAluSx1
CAediting_127853chr1_190452655_-SINEAluAluSx1
CAediting_127854chr1_190452690_-SINEAluAluSx1
CAediting_127855chr1_190452699_-SINEAluAluSx1
CAediting_127856chr1_190452707_-SINEAluAluSx1
CAediting_127857chr1_190452708_-SINEAluAluSx1
CAediting_127858chr1_190452712_-SINEAluAluSx1
CAediting_127859chr1_190452735_-SINEAluAluSx1
CAediting_127860chr1_190452740_-SINEAluAluSx1
CAediting_127861chr1_190452745_-SINEAluAluSx1
CAediting_127862chr1_190452770_-SINEAluAluSx1
CAediting_127863chr1_190452774_-SINEAluAluSx1
CAediting_127864chr1_190452813_-SINEAluAluSx1
CAediting_127865chr1_190452819_-SINEAluAluSx1
CAediting_127866chr1_190452832_-SINEAluAluSx1
CAediting_127867chr1_190452835_-SINEAluAluSx1
CAediting_127868chr1_190453293_-SINEAluAluSc
CAediting_127869chr1_190453325_-SINEAluAluSc
CAediting_127870chr1_190453326_-SINEAluAluSc
CAediting_127871chr1_190453359_-SINEAluAluSc
CAediting_127872chr1_190453385_-SINEAluAluSc
CAediting_127873chr1_190453388_-SINEAluAluSc
CAediting_127874chr1_190453389_-SINEAluAluSc
CAediting_127875chr1_190453390_-SINEAluAluSc
CAediting_127876chr1_190453391_-SINEAluAluSc
CAediting_127877chr1_190453392_-SINEAluAluSc
CAediting_127878chr1_190453394_-SINEAluAluSc
CAediting_127879chr1_190453396_-SINEAluAluSc
CAediting_127880chr1_190453397_-SINEAluAluSc
CAediting_127881chr1_190453398_-SINEAluAluSc
CAediting_127882chr1_190453403_-SINEAluAluSc
CAediting_127883chr1_190453414_-SINEAluAluSc
CAediting_127884chr1_190453437_-SINEAluAluSc
CAediting_127885chr1_190453445_-SINEAluAluSc
CAediting_127886chr1_190453446_-SINEAluAluSc
CAediting_127887chr1_190453451_-SINEAluAluSc
CAediting_127888chr1_190462193_-SINEAluAluSx

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RNA A-to-I editing events in the alternative splicing sites for BRINP3

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000162670.9.BRINP3.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000162670.9.BRINP3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BRINP3

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for BRINP3

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for BRINP3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for BRINP3

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for BRINP3

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
PRADCAediting_127869chr1_190453325_-0.01435127528929640.291496694998176....
PRADCAediting_127871chr1_190453359_-0.0301409354850720.267124569930967....

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Relation with cancer stages for BRINP3

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for BRINP3

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LGGCAediting_127871chr1_190453359_-0.01169772876813410.04848370.00215928

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RelatedDrugs for BRINP3

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for BRINP3

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource