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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

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Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ASB16-AS1 (CAeditome ID:339201)

Gene summary for ASB16-AS1

check button Gene summary
Gene informationGene symbol

ASB16-AS1

Gene ID

339201

Gene nameASB16 antisense RNA 1
SynonymsC17orf65
Cytomap

17q21.31

Type of genencRNA
DescriptionCTB-175E5.4
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for ASB16-AS1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000267080.4
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1201275(44179086, -), CAediting_1201276(44179100, -), CAediting_1201277(44179247, -), CAediting_1201278(44179256, -), CAediting_1201279(44179259, -), CAediting_1201280(44179268, -), CAediting_1201281(44179269, -), CAediting_1201282(44179270, -), CAediting_1201283(44179291, -), CAediting_1201284(44179296, -), CAediting_1201285(44179301, -), CAediting_1201286(44179310, -), CAediting_1201287(44179333, -), CAediting_1201288(44179343, -), CAediting_1201289(44179345, -), CAediting_1201290(44179347, -), CAediting_1201291(44179350, -), CAediting_1201292(44179356, -), CAediting_1201293(44179383, -), CAediting_1201294(44179384, -), CAediting_1201295(44179391, -), CAediting_1201296(44179393, -), CAediting_1201297(44179405, -), CAediting_1201298(44179420, -), CAediting_1201299(44179468, -), CAediting_1201300(44179476, -), CAediting_1201301(44179480, -), CAediting_1201302(44179491, -), CAediting_1201303(44179499, -), CAediting_1201304(44179500, -), CAediting_1201305(44179524, -), CAediting_1201306(44179526, -), CAediting_1201307(44179531, -), CAediting_1201308(44179539, -), CAediting_1201309(44179566, -), CAediting_1201310(44179572, -), CAediting_1201311(44179579, -), CAediting_1201312(44179586, -), CAediting_1201313(44179591, -), CAediting_1201314(44179601, -), CAediting_1201315(44179614, -), CAediting_1201316(44179624, -), CAediting_1201317(44179642, -), CAediting_1201318(44179646, -), CAediting_1201319(44179648, -), CAediting_1201320(44179649, -), CAediting_1201321(44181626, -), CAediting_1201322(44181636, -), CAediting_1201323(44181662, -), CAediting_1201324(44181665, -), CAediting_1201325(44181666, -), CAediting_1201326(44181686, -), CAediting_1201327(44181691, -), CAediting_1201328(44181707, -), CAediting_1201329(44181710, -), CAediting_1201330(44181714, -), CAediting_1201331(44181715, -), CAediting_1201332(44181726, -), CAediting_1201333(44181741, -), CAediting_1201334(44181743, -), CAediting_1201335(44181747, -), CAediting_1201336(44182599, -), CAediting_1201337(44182635, -), CAediting_1201338(44182636, -), CAediting_1201339(44182640, -), CAediting_1201340(44182644, -), CAediting_1201341(44182652, -), CAediting_1201342(44182726, -), CAediting_1201343(44182819, -), CAediting_1201344(44182846, -), CAediting_1201345(44182854, -), CAediting_1201346(44182859, -), CAediting_1201347(44182861, -), CAediting_1201348(44182889, -), CAediting_1201349(44182892, -), CAediting_1201350(44182898, -), CAediting_1201351(44182941, -), CAediting_1201352(44182947, -), CAediting_1201353(44182966, -), CAediting_1201354(44182998, -), CAediting_1201355(44183029, -), CAediting_1201356(44183034, -), CAediting_1201357(44183050, -), CAediting_1201358(44183053, -), CAediting_1201359(44183059, -), CAediting_1201360(44183083, -), CAediting_1201361(44184412, -), CAediting_1201362(44184502, -), CAediting_1201363(44184537, -), CAediting_1201364(44184570, -), CAediting_1201365(44184980, -), CAediting_1201366(44185207, -), CAediting_1201367(44185499, -), CAediting_1201368(44185506, -), CAediting_1201369(44185507, -), CAediting_1201370(44185531, -), CAediting_1201371(44185534, -), CAediting_1201372(44185538, -), CAediting_1201373(44185548, -), CAediting_1201374(44185574, -), CAediting_1201375(44185583, -), CAediting_1201376(44185613, -), CAediting_1201377(44185629, -), CAediting_1201378(44185637, -), CAediting_1201379(44185642, -), CAediting_1201380(44185659, -), CAediting_1201381(44185667, -), CAediting_1201382(44185674, -), CAediting_1201383(44185680, -), CAediting_1201384(44185681, -), CAediting_1201385(44185689, -), CAediting_1201386(44185708, -), CAediting_1201387(44185758, -), CAediting_1201388(44185934, -), CAediting_1201389(44185963, -), CAediting_1201390(44185979, -), CAediting_1201391(44185980, -), CAediting_1201392(44186063, -), CAediting_1201393(44186076, -), CAediting_1201394(44186105, -), CAediting_1201395(44186192, -), CAediting_1201396(44186201, -), CAediting_1201397(44186208, -), CAediting_1201398(44186220, -), CAediting_1201399(44186237, -), CAediting_1201400(44186238, -), CAediting_1201401(44186274, -),

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RNA editing positional annotations for ASB16-AS1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1201275chr17_44179086_-ncRNA_intronic
CAediting_1201276chr17_44179100_-ncRNA_intronic
CAediting_1201277chr17_44179247_-ncRNA_intronic
CAediting_1201278chr17_44179256_-ncRNA_intronic
CAediting_1201279chr17_44179259_-ncRNA_intronic
CAediting_1201280chr17_44179268_-ncRNA_intronic
CAediting_1201281chr17_44179269_-ncRNA_intronic
CAediting_1201282chr17_44179270_-ncRNA_intronic
CAediting_1201283chr17_44179291_-ncRNA_intronic
CAediting_1201284chr17_44179296_-ncRNA_intronic
CAediting_1201285chr17_44179301_-ncRNA_intronic
CAediting_1201286chr17_44179310_-ncRNA_intronic
CAediting_1201287chr17_44179333_-ncRNA_intronic
CAediting_1201288chr17_44179343_-ncRNA_intronic
CAediting_1201289chr17_44179345_-ncRNA_intronic
CAediting_1201290chr17_44179347_-ncRNA_intronic
CAediting_1201291chr17_44179350_-ncRNA_intronic
CAediting_1201292chr17_44179356_-ncRNA_intronic
CAediting_1201293chr17_44179383_-ncRNA_intronic
CAediting_1201294chr17_44179384_-ncRNA_intronic
CAediting_1201295chr17_44179391_-ncRNA_intronic
CAediting_1201296chr17_44179393_-ncRNA_intronic
CAediting_1201297chr17_44179405_-ncRNA_intronic
CAediting_1201298chr17_44179420_-ncRNA_intronic
CAediting_1201299chr17_44179468_-ncRNA_intronic
CAediting_1201300chr17_44179476_-ncRNA_intronic
CAediting_1201301chr17_44179480_-ncRNA_intronic
CAediting_1201302chr17_44179491_-ncRNA_intronic
CAediting_1201303chr17_44179499_-ncRNA_intronic
CAediting_1201304chr17_44179500_-ncRNA_intronic
CAediting_1201305chr17_44179524_-ncRNA_intronic
CAediting_1201306chr17_44179526_-ncRNA_intronic
CAediting_1201307chr17_44179531_-ncRNA_intronic
CAediting_1201308chr17_44179539_-ncRNA_intronic
CAediting_1201309chr17_44179566_-ncRNA_intronic
CAediting_1201310chr17_44179572_-ncRNA_intronic
CAediting_1201311chr17_44179579_-ncRNA_intronic
CAediting_1201312chr17_44179586_-ncRNA_intronic
CAediting_1201313chr17_44179591_-ncRNA_intronic
CAediting_1201314chr17_44179601_-ncRNA_intronic
CAediting_1201315chr17_44179614_-ncRNA_intronic
CAediting_1201316chr17_44179624_-ncRNA_intronic
CAediting_1201317chr17_44179642_-ncRNA_intronic
CAediting_1201318chr17_44179646_-ncRNA_intronic
CAediting_1201319chr17_44179648_-ncRNA_intronic
CAediting_1201320chr17_44179649_-ncRNA_intronic
CAediting_1201321chr17_44181626_-ncRNA_exonic
CAediting_1201322chr17_44181636_-ncRNA_exonic
CAediting_1201323chr17_44181662_-ncRNA_exonic
CAediting_1201324chr17_44181665_-ncRNA_exonic
CAediting_1201325chr17_44181666_-ncRNA_exonic
CAediting_1201326chr17_44181686_-ncRNA_exonic
CAediting_1201327chr17_44181691_-ncRNA_exonic
CAediting_1201328chr17_44181707_-ncRNA_exonic
CAediting_1201329chr17_44181710_-ncRNA_exonic
CAediting_1201330chr17_44181714_-ncRNA_exonic
CAediting_1201331chr17_44181715_-ncRNA_exonic
CAediting_1201332chr17_44181726_-ncRNA_exonic
CAediting_1201333chr17_44181741_-ncRNA_exonic
CAediting_1201334chr17_44181743_-ncRNA_splicing
CAediting_1201335chr17_44181747_-ncRNA_intronic
CAediting_1201336chr17_44182599_-ncRNA_intronic
CAediting_1201337chr17_44182635_-ncRNA_intronic
CAediting_1201338chr17_44182636_-ncRNA_intronic
CAediting_1201339chr17_44182640_-ncRNA_intronic
CAediting_1201340chr17_44182644_-ncRNA_intronic
CAediting_1201341chr17_44182652_-ncRNA_intronic
CAediting_1201342chr17_44182726_-ncRNA_intronic
CAediting_1201343chr17_44182819_-ncRNA_intronic
CAediting_1201344chr17_44182846_-ncRNA_intronic
CAediting_1201345chr17_44182854_-ncRNA_intronic
CAediting_1201346chr17_44182859_-ncRNA_intronic
CAediting_1201347chr17_44182861_-ncRNA_intronic
CAediting_1201348chr17_44182889_-ncRNA_intronic
CAediting_1201349chr17_44182892_-ncRNA_intronic
CAediting_1201350chr17_44182898_-ncRNA_intronic
CAediting_1201351chr17_44182941_-ncRNA_exonic
CAediting_1201352chr17_44182947_-ncRNA_exonic
CAediting_1201353chr17_44182966_-ncRNA_exonic
CAediting_1201354chr17_44182998_-ncRNA_exonic
CAediting_1201355chr17_44183029_-ncRNA_exonic
CAediting_1201356chr17_44183034_-ncRNA_exonic
CAediting_1201357chr17_44183050_-ncRNA_exonic
CAediting_1201358chr17_44183053_-ncRNA_exonic
CAediting_1201359chr17_44183059_-ncRNA_exonic
CAediting_1201360chr17_44183083_-ncRNA_exonic
CAediting_1201361chr17_44184412_-ncRNA_intronic
CAediting_1201362chr17_44184502_-ncRNA_intronic
CAediting_1201363chr17_44184537_-ncRNA_intronic
CAediting_1201364chr17_44184570_-ncRNA_intronic
CAediting_1201365chr17_44184980_-ncRNA_intronic
CAediting_1201366chr17_44185207_-ncRNA_intronic
CAediting_1201367chr17_44185499_-ncRNA_intronic
CAediting_1201368chr17_44185506_-ncRNA_intronic
CAediting_1201369chr17_44185507_-ncRNA_intronic
CAediting_1201370chr17_44185531_-ncRNA_intronic
CAediting_1201371chr17_44185534_-ncRNA_intronic
CAediting_1201372chr17_44185538_-ncRNA_intronic
CAediting_1201373chr17_44185548_-ncRNA_intronic
CAediting_1201374chr17_44185574_-ncRNA_intronic
CAediting_1201375chr17_44185583_-ncRNA_intronic
CAediting_1201376chr17_44185613_-ncRNA_intronic
CAediting_1201377chr17_44185629_-ncRNA_intronic
CAediting_1201378chr17_44185637_-ncRNA_intronic
CAediting_1201379chr17_44185642_-ncRNA_intronic
CAediting_1201380chr17_44185659_-ncRNA_intronic
CAediting_1201381chr17_44185667_-ncRNA_intronic
CAediting_1201382chr17_44185674_-ncRNA_intronic
CAediting_1201383chr17_44185680_-ncRNA_intronic
CAediting_1201384chr17_44185681_-ncRNA_intronic
CAediting_1201385chr17_44185689_-ncRNA_intronic
CAediting_1201386chr17_44185708_-ncRNA_intronic
CAediting_1201387chr17_44185758_-ncRNA_intronic
CAediting_1201388chr17_44185934_-ncRNA_intronic
CAediting_1201389chr17_44185963_-ncRNA_intronic
CAediting_1201390chr17_44185979_-ncRNA_intronic
CAediting_1201391chr17_44185980_-ncRNA_intronic
CAediting_1201392chr17_44186063_-ncRNA_intronic
CAediting_1201393chr17_44186076_-ncRNA_intronic
CAediting_1201394chr17_44186105_-ncRNA_intronic
CAediting_1201395chr17_44186192_-ncRNA_intronic
CAediting_1201396chr17_44186201_-ncRNA_intronic
CAediting_1201397chr17_44186208_-ncRNA_intronic
CAediting_1201398chr17_44186220_-ncRNA_intronic
CAediting_1201399chr17_44186237_-ncRNA_intronic
CAediting_1201400chr17_44186238_-ncRNA_intronic
CAediting_1201401chr17_44186274_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1201277chr17_44179247_-SINEAluAluSx
CAediting_1201278chr17_44179256_-SINEAluAluSx
CAediting_1201279chr17_44179259_-SINEAluAluSx
CAediting_1201280chr17_44179268_-SINEAluAluSx
CAediting_1201281chr17_44179269_-SINEAluAluSx
CAediting_1201282chr17_44179270_-SINEAluAluSx
CAediting_1201283chr17_44179291_-SINEAluAluSx
CAediting_1201284chr17_44179296_-SINEAluAluSx
CAediting_1201285chr17_44179301_-SINEAluAluSx
CAediting_1201286chr17_44179310_-SINEAluAluSx
CAediting_1201287chr17_44179333_-SINEAluAluSx
CAediting_1201288chr17_44179343_-SINEAluAluSx
CAediting_1201289chr17_44179345_-SINEAluAluSx
CAediting_1201290chr17_44179347_-SINEAluAluSx
CAediting_1201291chr17_44179350_-SINEAluAluSx
CAediting_1201292chr17_44179356_-SINEAluAluSx
CAediting_1201293chr17_44179383_-SINEAluAluSg
CAediting_1201294chr17_44179384_-SINEAluAluSg
CAediting_1201295chr17_44179391_-SINEAluAluSg
CAediting_1201296chr17_44179393_-SINEAluAluSg
CAediting_1201297chr17_44179405_-SINEAluAluSg
CAediting_1201298chr17_44179420_-SINEAluAluSg
CAediting_1201299chr17_44179468_-SINEAluAluSg
CAediting_1201300chr17_44179476_-SINEAluAluSg
CAediting_1201301chr17_44179480_-SINEAluAluSg
CAediting_1201302chr17_44179491_-SINEAluAluSg
CAediting_1201303chr17_44179499_-SINEAluAluSg
CAediting_1201304chr17_44179500_-SINEAluAluSg
CAediting_1201305chr17_44179524_-SINEAluAluSg
CAediting_1201306chr17_44179526_-SINEAluAluSg
CAediting_1201307chr17_44179531_-SINEAluAluSg
CAediting_1201308chr17_44179539_-SINEAluAluSg
CAediting_1201309chr17_44179566_-SINEAluAluSg
CAediting_1201310chr17_44179572_-SINEAluAluSg
CAediting_1201311chr17_44179579_-SINEAluAluSg
CAediting_1201312chr17_44179586_-SINEAluAluSg
CAediting_1201313chr17_44179591_-SINEAluAluSg
CAediting_1201314chr17_44179601_-SINEAluAluSg
CAediting_1201315chr17_44179614_-SINEAluAluSg
CAediting_1201316chr17_44179624_-SINEAluAluSg
CAediting_1201317chr17_44179642_-SINEAluAluSg
CAediting_1201318chr17_44179646_-SINEAluAluSg
CAediting_1201319chr17_44179648_-SINEAluAluSg
CAediting_1201320chr17_44179649_-SINEAluAluSg
CAediting_1201321chr17_44181626_-SINEAluAluSx
CAediting_1201322chr17_44181636_-SINEAluAluSx
CAediting_1201323chr17_44181662_-SINEAluAluSx
CAediting_1201324chr17_44181665_-SINEAluAluSx
CAediting_1201325chr17_44181666_-SINEAluAluSx
CAediting_1201326chr17_44181686_-SINEAluAluSx
CAediting_1201327chr17_44181691_-SINEAluAluSx
CAediting_1201328chr17_44181707_-SINEAluAluSx
CAediting_1201329chr17_44181710_-SINEAluAluSx
CAediting_1201330chr17_44181714_-SINEAluAluSx
CAediting_1201331chr17_44181715_-SINEAluAluSx
CAediting_1201332chr17_44181726_-SINEAluAluSx
CAediting_1201333chr17_44181741_-SINEAluAluSx
CAediting_1201334chr17_44181743_-SINEAluAluSx
CAediting_1201335chr17_44181747_-SINEAluAluSx
CAediting_1201336chr17_44182599_-SINEAluFLAM_C
CAediting_1201337chr17_44182635_-SINEAluAluJb
CAediting_1201338chr17_44182636_-SINEAluAluJb
CAediting_1201339chr17_44182640_-SINEAluAluJb
CAediting_1201340chr17_44182644_-SINEAluAluJb
CAediting_1201341chr17_44182652_-SINEAluAluJb
CAediting_1201342chr17_44182726_-SINEAluAluJb
CAediting_1201343chr17_44182819_-SINEAluAluJo
CAediting_1201344chr17_44182846_-SINEAluAluJo
CAediting_1201345chr17_44182854_-SINEAluAluJo
CAediting_1201346chr17_44182859_-SINEAluAluJo
CAediting_1201347chr17_44182861_-SINEAluAluJo
CAediting_1201348chr17_44182889_-SINEAluAluJo
CAediting_1201349chr17_44182892_-SINEAluAluJo
CAediting_1201350chr17_44182898_-SINEAluAluJo
CAediting_1201351chr17_44182941_-SINEAluAluJo
CAediting_1201352chr17_44182947_-SINEAluAluJo
CAediting_1201353chr17_44182966_-SINEAluAluJo
CAediting_1201354chr17_44182998_-SINEAluAluJo
CAediting_1201355chr17_44183029_-SINEAluAluJo
CAediting_1201356chr17_44183034_-SINEAluAluJo
CAediting_1201357chr17_44183050_-SINEAluAluJo
CAediting_1201358chr17_44183053_-SINEAluAluJo
CAediting_1201359chr17_44183059_-SINEAluAluJo
CAediting_1201360chr17_44183083_-SINEAluAluJo
CAediting_1201361chr17_44184412_-SINEAluAluJr
CAediting_1201362chr17_44184502_-SINEAluAluJr
CAediting_1201363chr17_44184537_-SINEAluAluJr
CAediting_1201364chr17_44184570_-SINEAluAluJr
CAediting_1201365chr17_44184980_-SINEAluAluJb
CAediting_1201366chr17_44185207_-SINEAluAluJr
CAediting_1201367chr17_44185499_-SINEAluAluSg
CAediting_1201368chr17_44185506_-SINEAluAluSg
CAediting_1201369chr17_44185507_-SINEAluAluSg
CAediting_1201370chr17_44185531_-SINEAluAluSg
CAediting_1201371chr17_44185534_-SINEAluAluSg
CAediting_1201372chr17_44185538_-SINEAluAluSg
CAediting_1201373chr17_44185548_-SINEAluAluSg
CAediting_1201374chr17_44185574_-SINEAluAluSg
CAediting_1201375chr17_44185583_-SINEAluAluSg
CAediting_1201376chr17_44185613_-SINEAluAluSg
CAediting_1201377chr17_44185629_-SINEAluAluSg
CAediting_1201378chr17_44185637_-SINEAluAluSg
CAediting_1201379chr17_44185642_-SINEAluAluSg
CAediting_1201380chr17_44185659_-SINEAluAluSg
CAediting_1201381chr17_44185667_-SINEAluAluSg
CAediting_1201382chr17_44185674_-SINEAluAluSg
CAediting_1201383chr17_44185680_-SINEAluAluSg
CAediting_1201384chr17_44185681_-SINEAluAluSg
CAediting_1201385chr17_44185689_-SINEAluAluSg
CAediting_1201386chr17_44185708_-LINEL1L1ME3A
CAediting_1201387chr17_44185758_-LINEL1L1ME3A
CAediting_1201388chr17_44185934_-SINEAluAluJr
CAediting_1201389chr17_44185963_-SINEAluAluJr
CAediting_1201390chr17_44185979_-SINEAluAluJr
CAediting_1201391chr17_44185980_-SINEAluAluJr
CAediting_1201392chr17_44186063_-SINEAluAluSp
CAediting_1201393chr17_44186076_-SINEAluAluSp
CAediting_1201394chr17_44186105_-SINEAluAluSp
CAediting_1201395chr17_44186192_-SINEAluAluSp
CAediting_1201396chr17_44186201_-SINEAluAluSp
CAediting_1201397chr17_44186208_-SINEAluAluSp
CAediting_1201398chr17_44186220_-SINEAluAluSp
CAediting_1201399chr17_44186237_-SINEAluAluSp
CAediting_1201400chr17_44186238_-SINEAluAluSp
CAediting_1201401chr17_44186274_-SINEAluAluSp

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RNA A-to-I editing events in the alternative splicing sites for ASB16-AS1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000267080.4.ASB16-AS1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000267080.4.ASB16-AS1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ASB16-AS1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
BRCA.CAediting_1201311.ENSG00000267080.ASB16-AS1.png
Soverview

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Protein coding region RNA A-to-I editings for ASB16-AS1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ASB16-AS1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1201324chr17_44181665_-ENSG00000267080.4ENST00000591166.1hsa-miR-453944181665441816706mer4418166444181683141-21.82
CAediting_1201324chr17_44181665_-ENSG00000267080.4ENST00000592897.1hsa-miR-453944181665441816706mer4418166444181683141-21.82
CAediting_1201328chr17_44181707_-ENSG00000267080.4ENST00000591166.1hsa-miR-122-3p44181703441817097mer-m84418170244181722148-12.13
CAediting_1201328chr17_44181707_-ENSG00000267080.4ENST00000592897.1hsa-miR-122-3p44181703441817097mer-m84418170244186566148-12.13
CAediting_1201321chr17_44181626_-ENSG00000267080.4ENST00000591166.1hsa-miR-17-3p44181623441816297mer-m84417664244181644154-18.94
CAediting_1201321chr17_44181626_-ENSG00000267080.4ENST00000592897.1hsa-miR-17-3p44181623441816297mer-m84417836344181644154-18.94
CAediting_1201322chr17_44181636_-ENSG00000267080.4ENST00000591166.1hsa-miR-4691-3p44181632441816387mer-m84418163144181658150-26.36
CAediting_1201322chr17_44181636_-ENSG00000267080.4ENST00000592897.1hsa-miR-4691-3p44181632441816387mer-m84418163144181658150-26.36
CAediting_1201330chr17_44181714_-ENSG00000267080.4ENST00000591166.1hsa-miR-508-5p44181713441817197mer-m84418171244181734150-20.11
CAediting_1201330chr17_44181714_-ENSG00000267080.4ENST00000591166.1hsa-miR-766-3p44181714441817207mer-m84418171344181734145-17.93
CAediting_1201330chr17_44181714_-ENSG00000267080.4ENST00000591166.1hsa-miR-770344181709441817168mer-1a4418170944181731162-24.45
CAediting_1201330chr17_44181714_-ENSG00000267080.4ENST00000592897.1hsa-miR-508-5p44181713441817197mer-m84418171244186579144-20
CAediting_1201330chr17_44181714_-ENSG00000267080.4ENST00000592897.1hsa-miR-766-3p44181714441817207mer-m84418171344186578145-18.09
CAediting_1201330chr17_44181714_-ENSG00000267080.4ENST00000592897.1hsa-miR-770344181709441817168mer-1a4418170944186575162-26.39
CAediting_1201331chr17_44181715_-ENSG00000267080.4ENST00000591166.1hsa-miR-324-5p44181710441817178mer-1a4418171044181733145-19.87
CAediting_1201331chr17_44181715_-ENSG00000267080.4ENST00000591166.1hsa-miR-797744181714441817207mer-m84418171344181730145-16.78
CAediting_1201331chr17_44181715_-ENSG00000267080.4ENST00000592897.1hsa-miR-324-5p44181710441817178mer-1a4418171044186577147-20.95
CAediting_1201331chr17_44181715_-ENSG00000267080.4ENST00000592897.1hsa-miR-797744181714441817207mer-m84418171344186574145-16.78
CAediting_1201353chr17_44182966_-ENSG00000267080.4ENST00000591166.1hsa-miR-4691-3p44182962441829687mer-m84418296144182987156-30.33
CAediting_1201354chr17_44182998_-ENSG00000267080.4ENST00000591166.1hsa-miR-607844182994441830018mer-1a4418299444183013157-23.55
CAediting_1201355chr17_44183029_-ENSG00000267080.4ENST00000591166.1hsa-miR-453744183025441830317mer-m84418302444183046151-24.94
CAediting_1201356chr17_44183034_-ENSG00000267080.4ENST00000591166.1hsa-miR-15a-3p44183031441830366mer4418303044183051145-18.6
CAediting_1201356chr17_44183034_-ENSG00000267080.4ENST00000591166.1hsa-miR-4717-5p44183031441830377mer-m84418303044183051159-19.96
CAediting_1201357chr17_44183050_-ENSG00000267080.4ENST00000591166.1hsa-miR-367244183045441830517mer-m84418304444183065141-14.4
CAediting_1201357chr17_44183050_-ENSG00000267080.4ENST00000591166.1hsa-miR-6529-3p44183050441830567mer-m84418304944186566156-18.52
CAediting_1201357chr17_44183050_-ENSG00000267080.4ENST00000591166.1hsa-miR-6864-3p44183045441830517mer-m84418304444183067146-19.98
CAediting_1201357chr17_44183050_-ENSG00000267080.4ENST00000591166.1hsa-miR-6889-3p44183050441830567mer-m84418304944183069156-22.5
CAediting_1201357chr17_44183050_-ENSG00000267080.4ENST00000591166.1hsa-miR-7157-3p44183050441830556mer4418304944186565147-24.29
CAediting_1201357chr17_44183050_-ENSG00000267080.4ENST00000591166.1hsa-miR-873-3p44183045441830528mer-1a4418304544186566141-22.8
CAediting_1201332chr17_44181726_-ENSG00000267080.4ENST00000591166.1hsa-miR-1273c44181725441817317mer-m84418172444182934155-20.18
CAediting_1201332chr17_44181726_-ENSG00000267080.4ENST00000591166.1hsa-miR-1285-3p44181721441817266mer4418172044182930147-23.41
CAediting_1201332chr17_44181726_-ENSG00000267080.4ENST00000591166.1hsa-miR-448644181721441817277mer-m84418172044181736145-20.34

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1201326chr17_44181686_-ENSG00000267080.4ENST00000592897.1hsa-miR-377-5p44181681441816877mer-m84418168044181701155-17.55
CAediting_1201326chr17_44181686_-ENSG00000267080.4ENST00000592897.1hsa-miR-608644181681441816877mer-m84418168044181699148-21.93
CAediting_1201359chr17_44183059_-ENSG00000267080.4ENST00000591166.1hsa-miR-324-3p44183055441830617mer-m84418305444186571148-24.44
CAediting_1201326chr17_44181686_-ENSG00000267080.4ENST00000591166.1hsa-miR-377-5p44181681441816877mer-m84418168044181701155-17.55
CAediting_1201359chr17_44183059_-ENSG00000267080.4ENST00000591166.1hsa-miR-425244183053441830608mer-1a4418305344186568149-22.82
CAediting_1201359chr17_44183059_-ENSG00000267080.4ENST00000591166.1hsa-miR-4793-3p44183058441830647mer-m84418305744186580150-21.64
CAediting_1201333chr17_44181741_-ENSG00000267080.4ENST00000591166.1hsa-miR-5582-3p44181736441829307mer-m84418173544182944155-16.29
CAediting_1201353chr17_44182966_-ENSG00000267080.4ENST00000591166.1hsa-miR-569044182962441829687mer-m84418296144182981145-17.72
CAediting_1201322chr17_44181636_-ENSG00000267080.4ENST00000591166.1hsa-miR-569044181632441816387mer-m84418163144181651145-16.74
CAediting_1201326chr17_44181686_-ENSG00000267080.4ENST00000591166.1hsa-miR-608644181681441816877mer-m84418168044181699148-21.93
CAediting_1201331chr17_44181715_-ENSG00000267080.4ENST00000591166.1hsa-miR-6512-3p44181714441817218mer-1a4418171444181735140-19.48
CAediting_1201331chr17_44181715_-ENSG00000267080.4ENST00000591166.1hsa-miR-6720-5p44181714441817218mer-1a4418171444181735152-24.42
CAediting_1201355chr17_44183029_-ENSG00000267080.4ENST00000591166.1hsa-miR-7162-3p44183028441830347mer-m84418302744183043154-22.1
CAediting_1201352chr17_44182947_-ENSG00000267080.4ENST00000591166.1hsa-miR-797844182943441829486mer4418294244182962143-16.16

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229414chr17_67471546_+ENSG00000267080.4ENST00000592897.1hsa-miR-548aa44181697441817037mer-m84418169644186565155-18.95
CAediting_580943chr7_100356700_+ENSG00000267080.4ENST00000592897.1hsa-miR-6840-3p44181670441816767mer-m84418166944181685141-27.37
CAediting_1054808chr15_66496985_-ENSG00000267080.4ENST00000618557.1hsa-miR-451244177058441770647mer-m84417705744177078147-19.19
CAediting_86358chr1_109598906_+ENSG00000267080.4ENST00000618557.1hsa-miR-197-5p44176650441766567mer-m84417664944176669169-35.02
CAediting_86358chr1_109598906_+ENSG00000267080.4ENST00000618557.1hsa-miR-197-5p44176416441764227mer-m84417641544176436166-29.14
CAediting_604450chr7_133034877_-ENSG00000267080.4ENST00000618557.1hsa-miR-365444177196441772038mer-1a4417719644177214142-16.59
CAediting_1229414chr17_67471546_+ENSG00000267080.4ENST00000591166.1hsa-miR-548aa44181697441817037mer-m84418169644181721155-18.95
CAediting_86358chr1_109598906_+ENSG00000267080.4ENST00000591166.1hsa-miR-197-5p44176416441764227mer-m84417641544176436166-29.14
CAediting_580943chr7_100356700_+ENSG00000267080.4ENST00000591166.1hsa-miR-6840-3p44181670441816767mer-m84418166944181685141-27.37
CAediting_468389chr6_31355314_-ENSG00000267080.4ENST00000592897.1hsa-miR-6891-5p44177750441777567mer-m84417774944177765153-26.81

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1368054chr19_46709310_-ENSG00000267080.4ENST00000592897.1hsa-miR-320e44186641441866477mer-m84418664044186657152-17.91
CAediting_1524209chrX_134546392_-ENSG00000267080.4ENST00000592897.1hsa-miR-503-5p44177801441778066mer4417780044178189141-21.97
CAediting_1306324chr19_13836464_-ENSG00000267080.4ENST00000591166.1hsa-miR-27a-3p44183034441830396mer4418303344183054140-11.84

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ASB16-AS1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ASB16-AS1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for ASB16-AS1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BRCApathologic_stageCAediting_1201315chr17_44179614_-0.043025309246488-0.244354337596088

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Relation with survival for ASB16-AS1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
BRCACAediting_1201280chr17_44179268_-0.04738767825596690.01637361673.13
OVCAediting_1201281chr17_44179269_-0.0403673514861160.01825719.8962

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RelatedDrugs for ASB16-AS1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ASB16-AS1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource