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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: HSPA9 (CAeditome ID:3313)

Gene summary for HSPA9

check button Gene summary
Gene informationGene symbol

HSPA9

Gene ID

3313

Gene nameheat shock protein family A (Hsp70) member 9
SynonymsCRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4
Cytomap

5q31.2

Type of geneprotein-coding
Descriptionstress-70 protein, mitochondrial75 kDa glucose-regulated proteincatecholamine-regulated protein 40epididymis secretory sperm binding protein Li 124mheat shock 70kD protein 9Bheat shock 70kDa protein 9 (mortalin)mortalin, perinuclearmortalin-2morta
Modification date20210518
UniProtAcc

P38646

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
HSPA9

GO:0005739

Stress-70 protein, mitochondrial

0000052

HSPA9

GO:0005739

Stress-70 protein, mitochondrial

26702583

HSPA9

GO:0005739

Stress-70 protein, mitochondrial

7896880

HSPA9

GO:0042645

Stress-70 protein, mitochondrial

18063578


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RNA A-to-I events for HSPA9

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000113013.11

check button RNA A-to-I editing events in Cancer.
CAediting_432673(138557215, -), CAediting_432674(138557246, -), CAediting_432675(138557304, -), CAediting_432676(138557326, -), CAediting_432677(138559143, -), CAediting_432678(138559163, -), CAediting_432679(138559178, -), CAediting_432680(138559266, -), CAediting_432681(138560676, -), CAediting_432682(138560743, -), CAediting_432683(138560751, -), CAediting_432684(138560753, -), CAediting_432685(138560820, -), CAediting_432686(138561660, -), CAediting_432687(138562103, -), CAediting_432688(138565774, -), CAediting_432689(138565776, -), CAediting_432690(138565790, -), CAediting_432691(138565811, -), CAediting_432692(138565862, -), CAediting_432693(138565872, -), CAediting_432694(138566075, -), CAediting_432695(138566125, -), CAediting_432696(138566126, -), CAediting_432697(138567928, -), CAediting_432698(138568099, -), CAediting_432699(138568101, -), CAediting_432700(138568102, -), CAediting_432701(138568474, -), CAediting_432702(138570016, -), CAediting_432703(138570137, -), CAediting_432704(138570138, -), CAediting_432705(138570144, -), CAediting_432706(138570146, -), CAediting_432707(138570218, -), CAediting_432708(138570230, -), CAediting_432709(138570282, -), CAediting_432710(138570283, -), CAediting_432711(138571277, -), CAediting_432712(138571345, -), CAediting_432713(138571723, -), CAediting_432714(138571743, -), CAediting_432715(138571841, -), CAediting_432716(138571857, -), CAediting_432717(138571858, -), CAediting_432718(138571865, -), CAediting_432719(138571889, -), CAediting_432720(138571929, -), CAediting_432721(138571943, -), CAediting_432722(138571951, -), CAediting_432723(138572029, -), CAediting_432724(138572095, -), CAediting_432725(138572111, -), CAediting_432726(138572191, -), CAediting_432727(138572988, -), CAediting_432728(138572992, -), CAediting_432729(138572993, -), CAediting_432730(138573034, -), CAediting_432731(138573040, -), CAediting_432732(138573060, -), CAediting_432733(138573065, -), CAediting_432734(138573075, -), CAediting_432735(138573157, -), CAediting_432736(138573174, -), CAediting_432737(138573184, -), CAediting_432738(138573204, -), CAediting_432739(138573208, -), CAediting_432740(138573211, -), CAediting_432741(138573224, -), CAediting_432742(138573232, -), CAediting_432743(138573247, -), CAediting_432744(138573296, -), CAediting_432745(138573302, -), CAediting_432746(138573317, -), CAediting_432747(138573394, -), CAediting_432748(138573404, -), CAediting_432749(138573416, -), CAediting_432750(138573417, -), CAediting_432751(138573418, -), CAediting_432752(138573442, -), CAediting_432753(138573472, -), CAediting_432754(138573478, -), CAediting_432755(138573484, -), CAediting_432756(138573503, -), CAediting_432757(138573513, -), CAediting_432758(138573564, -), CAediting_432759(138573565, -),

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RNA editing positional annotations for HSPA9 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_432686chr5_138561660_-nonsynonymous SNVENST00000297185.6c.A1102Gp.K368EDPD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_432673chr5_138557215_-ncRNA_exonic
CAediting_432674chr5_138557246_-ncRNA_exonic
CAediting_432675chr5_138557304_-ncRNA_exonic
CAediting_432676chr5_138557326_-ncRNA_exonic
CAediting_432677chr5_138559143_-ncRNA_intronic
CAediting_432678chr5_138559163_-ncRNA_intronic
CAediting_432679chr5_138559178_-ncRNA_intronic
CAediting_432680chr5_138559266_-ncRNA_intronic
CAediting_432681chr5_138560676_-ncRNA_intronic
CAediting_432682chr5_138560743_-ncRNA_intronic
CAediting_432683chr5_138560751_-ncRNA_intronic
CAediting_432684chr5_138560753_-ncRNA_intronic
CAediting_432685chr5_138560820_-exonic
CAediting_432686chr5_138561660_-exonic
CAediting_432687chr5_138562103_-ncRNA_intronic
CAediting_432688chr5_138565774_-ncRNA_intronic
CAediting_432689chr5_138565776_-ncRNA_intronic
CAediting_432690chr5_138565790_-ncRNA_intronic
CAediting_432691chr5_138565811_-ncRNA_intronic
CAediting_432692chr5_138565862_-ncRNA_intronic
CAediting_432693chr5_138565872_-ncRNA_intronic
CAediting_432694chr5_138566075_-ncRNA_intronic
CAediting_432695chr5_138566125_-ncRNA_intronic
CAediting_432696chr5_138566126_-ncRNA_intronic
CAediting_432697chr5_138567928_-ncRNA_intronic
CAediting_432698chr5_138568099_-ncRNA_intronic
CAediting_432699chr5_138568101_-ncRNA_intronic
CAediting_432700chr5_138568102_-ncRNA_intronic
CAediting_432701chr5_138568474_-ncRNA_intronic
CAediting_432702chr5_138570016_-ncRNA_intronic
CAediting_432703chr5_138570137_-ncRNA_intronic
CAediting_432704chr5_138570138_-ncRNA_intronic
CAediting_432705chr5_138570144_-ncRNA_intronic
CAediting_432706chr5_138570146_-ncRNA_intronic
CAediting_432707chr5_138570218_-ncRNA_intronic
CAediting_432708chr5_138570230_-ncRNA_intronic
CAediting_432709chr5_138570282_-ncRNA_intronic
CAediting_432710chr5_138570283_-ncRNA_intronic
CAediting_432711chr5_138571277_-ncRNA_intronic
CAediting_432712chr5_138571345_-ncRNA_intronic
CAediting_432713chr5_138571723_-ncRNA_intronic
CAediting_432714chr5_138571743_-ncRNA_intronic
CAediting_432715chr5_138571841_-ncRNA_intronic
CAediting_432716chr5_138571857_-ncRNA_intronic
CAediting_432717chr5_138571858_-ncRNA_intronic
CAediting_432718chr5_138571865_-ncRNA_intronic
CAediting_432719chr5_138571889_-ncRNA_intronic
CAediting_432720chr5_138571929_-ncRNA_intronic
CAediting_432721chr5_138571943_-ncRNA_intronic
CAediting_432722chr5_138571951_-ncRNA_intronic
CAediting_432723chr5_138572029_-ncRNA_intronic
CAediting_432724chr5_138572095_-ncRNA_intronic
CAediting_432725chr5_138572111_-ncRNA_intronic
CAediting_432726chr5_138572191_-ncRNA_intronic
CAediting_432727chr5_138572988_-ncRNA_intronic
CAediting_432728chr5_138572992_-ncRNA_intronic
CAediting_432729chr5_138572993_-ncRNA_intronic
CAediting_432730chr5_138573034_-ncRNA_intronic
CAediting_432731chr5_138573040_-ncRNA_intronic
CAediting_432732chr5_138573060_-ncRNA_intronic
CAediting_432733chr5_138573065_-ncRNA_intronic
CAediting_432734chr5_138573075_-ncRNA_intronic
CAediting_432735chr5_138573157_-ncRNA_intronic
CAediting_432736chr5_138573174_-ncRNA_intronic
CAediting_432737chr5_138573184_-ncRNA_intronic
CAediting_432738chr5_138573204_-ncRNA_intronic
CAediting_432739chr5_138573208_-ncRNA_intronic
CAediting_432740chr5_138573211_-ncRNA_intronic
CAediting_432741chr5_138573224_-ncRNA_intronic
CAediting_432742chr5_138573232_-ncRNA_intronic
CAediting_432743chr5_138573247_-ncRNA_intronic
CAediting_432744chr5_138573296_-ncRNA_intronic
CAediting_432745chr5_138573302_-ncRNA_intronic
CAediting_432746chr5_138573317_-ncRNA_intronic
CAediting_432747chr5_138573394_-ncRNA_intronic
CAediting_432748chr5_138573404_-ncRNA_intronic
CAediting_432749chr5_138573416_-ncRNA_intronic
CAediting_432750chr5_138573417_-ncRNA_intronic
CAediting_432751chr5_138573418_-ncRNA_intronic
CAediting_432752chr5_138573442_-ncRNA_intronic
CAediting_432753chr5_138573472_-ncRNA_intronic
CAediting_432754chr5_138573478_-ncRNA_intronic
CAediting_432755chr5_138573484_-ncRNA_intronic
CAediting_432756chr5_138573503_-ncRNA_intronic
CAediting_432757chr5_138573513_-ncRNA_intronic
CAediting_432758chr5_138573564_-ncRNA_intronic
CAediting_432759chr5_138573565_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_432673chr5_138557215_-SINEAluAluSx3
CAediting_432674chr5_138557246_-SINEAluAluSx3
CAediting_432675chr5_138557304_-SINEAluAluSz
CAediting_432676chr5_138557326_-SINEAluAluSz
CAediting_432677chr5_138559143_-SINEAluAluJb
CAediting_432678chr5_138559163_-SINEAluAluJb
CAediting_432679chr5_138559178_-SINEAluAluJb
CAediting_432680chr5_138559266_-SINEAluAluJb
CAediting_432681chr5_138560676_-SINEAluAluY
CAediting_432682chr5_138560743_-SINEAluAluY
CAediting_432683chr5_138560751_-SINEAluAluY
CAediting_432684chr5_138560753_-SINEAluAluY
CAediting_432685chr5_138560820_-SINEAluAluY
CAediting_432687chr5_138562103_-SINEAluAluSc
CAediting_432688chr5_138565774_-SINEAluAluJb
CAediting_432689chr5_138565776_-SINEAluAluJb
CAediting_432690chr5_138565790_-SINEAluAluJb
CAediting_432691chr5_138565811_-SINEAluAluJb
CAediting_432692chr5_138565862_-SINEAluAluJb
CAediting_432693chr5_138565872_-SINEAluAluJb
CAediting_432694chr5_138566075_-SINEAluAluSp
CAediting_432695chr5_138566125_-SINEAluAluSp
CAediting_432696chr5_138566126_-SINEAluAluSp
CAediting_432697chr5_138567928_-SINEAluAluSx
CAediting_432698chr5_138568099_-SINEAluAluSx
CAediting_432699chr5_138568101_-SINEAluAluSx
CAediting_432700chr5_138568102_-SINEAluAluSx
CAediting_432701chr5_138568474_-SINEAluAluSp
CAediting_432702chr5_138570016_-SINEAluAluJb
CAediting_432703chr5_138570137_-SINEAluAluJb
CAediting_432704chr5_138570138_-SINEAluAluJb
CAediting_432705chr5_138570144_-SINEAluAluJb
CAediting_432706chr5_138570146_-SINEAluAluJb
CAediting_432707chr5_138570218_-SINEAluFLAM_C
CAediting_432708chr5_138570230_-SINEAluFLAM_C
CAediting_432709chr5_138570282_-SINEAluFLAM_C
CAediting_432710chr5_138570283_-SINEAluFLAM_C
CAediting_432711chr5_138571277_-SINEAluAluSx
CAediting_432712chr5_138571345_-SINEAluAluSx
CAediting_432713chr5_138571723_-SINEAluAluSq2
CAediting_432714chr5_138571743_-SINEAluAluSq2
CAediting_432715chr5_138571841_-SINEAluAluSq2
CAediting_432716chr5_138571857_-SINEAluAluSq2
CAediting_432717chr5_138571858_-SINEAluAluSq2
CAediting_432718chr5_138571865_-SINEAluAluSq2
CAediting_432719chr5_138571889_-SINEAluAluSq2
CAediting_432720chr5_138571929_-SINEAluAluSq2
CAediting_432721chr5_138571943_-SINEAluAluSq2
CAediting_432722chr5_138571951_-SINEAluAluSq2
CAediting_432723chr5_138572029_-SINEAluAluJb
CAediting_432724chr5_138572095_-SINEAluAluJb
CAediting_432725chr5_138572111_-SINEAluAluJb
CAediting_432726chr5_138572191_-SINEAluAluJb
CAediting_432727chr5_138572988_-SINEAluAluSc
CAediting_432728chr5_138572992_-SINEAluAluSc
CAediting_432729chr5_138572993_-SINEAluAluSc
CAediting_432730chr5_138573034_-SINEAluAluSc
CAediting_432731chr5_138573040_-SINEAluAluSc
CAediting_432732chr5_138573060_-SINEAluAluSc
CAediting_432733chr5_138573065_-SINEAluAluSc
CAediting_432734chr5_138573075_-SINEAluAluSc
CAediting_432735chr5_138573157_-SINEAluAluSc
CAediting_432736chr5_138573174_-SINEAluAluSc
CAediting_432737chr5_138573184_-SINEAluAluSc
CAediting_432738chr5_138573204_-SINEAluAluSx
CAediting_432739chr5_138573208_-SINEAluAluSx
CAediting_432740chr5_138573211_-SINEAluAluSx
CAediting_432741chr5_138573224_-SINEAluAluSx
CAediting_432742chr5_138573232_-SINEAluAluSx
CAediting_432743chr5_138573247_-SINEAluAluSx
CAediting_432744chr5_138573296_-SINEAluAluSx
CAediting_432745chr5_138573302_-SINEAluAluSx
CAediting_432746chr5_138573317_-SINEAluAluSx
CAediting_432747chr5_138573394_-SINEAluAluSz
CAediting_432748chr5_138573404_-SINEAluAluSz
CAediting_432749chr5_138573416_-SINEAluAluSz
CAediting_432750chr5_138573417_-SINEAluAluSz
CAediting_432751chr5_138573418_-SINEAluAluSz
CAediting_432752chr5_138573442_-SINEAluAluSz
CAediting_432753chr5_138573472_-SINEAluAluSz
CAediting_432754chr5_138573478_-SINEAluAluSz
CAediting_432755chr5_138573484_-SINEAluAluSz
CAediting_432756chr5_138573503_-SINEAluAluSz
CAediting_432757chr5_138573513_-SINEAluAluSz
CAediting_432758chr5_138573564_-SINEAluAluSz
CAediting_432759chr5_138573565_-SINEAluAluSz

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RNA A-to-I editing events in the alternative splicing sites for HSPA9

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_432682chr5_138560743_-138560742:1385607505SS0+5iCGGTGAAAC-11.58CGGTGAAGC-7.01

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000113013.11.HSPA9.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000113013.11.HSPA9.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HSPA9

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HSPA9

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for HSPA9

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HSPA9

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000297185.6protein_codingSoverviewSoverview
ENST00000524109.1retained_intronSoverviewSoverview
ENST00000507097.4retained_intronSoverviewSoverview
ENST00000523929.1nonsense_mediated_decaySoverviewSoverview
ENST00000508003.1retained_intronSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_432686ENST00000297185.6chr5_138561660_--965.60-965.60-965.60
CAediting_432673ENST00000524109.1chr5_138557215_--312.90-313.70-312.50
CAediting_432674ENST00000524109.1chr5_138557246_--313.30-313.70-312.50
CAediting_432675ENST00000524109.1chr5_138557304_--313.00-313.70-312.50
CAediting_432676ENST00000524109.1chr5_138557326_--313.00-313.70-312.50
CAediting_432686ENST00000507097.4chr5_138561660_--566.40-566.40-566.40
CAediting_432685ENST00000523929.1chr5_138560820_--226.30-226.00-226.30
CAediting_432686ENST00000523929.1chr5_138561660_--226.00-226.00-226.30
CAediting_432686ENST00000508003.1chr5_138561660_--161.30-161.20-161.30

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Relation with ADAR for HSPA9

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for HSPA9

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for HSPA9

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for HSPA9

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HSPA9

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
HSPA9C4225180EVEN-PLUS SYNDROME2CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HSPA9C0002896Sideroblastic anemia1CTD_human;GENOMICS_ENGLAND
HSPA9C0004364Autoimmune Diseases1CTD_human
HSPA9C0007134Renal Cell Carcinoma1CTD_human
HSPA9C0019693HIV Infections1CTD_human
HSPA9C0030567Parkinson Disease1CTD_human
HSPA9C0036341Schizophrenia1PSYGENET
HSPA9C0042164Uveitis1CTD_human
HSPA9C0151744Myocardial Ischemia1CTD_human
HSPA9C0221765Chronic schizophrenia1PSYGENET
HSPA9C0279702Conventional (Clear Cell) Renal Cell Carcinoma1CTD_human
HSPA9C0376618Endotoxemia1CTD_human
HSPA9C0520459Necrotizing Enterocolitis1CTD_human
HSPA9C1266042Chromophobe Renal Cell Carcinoma1CTD_human
HSPA9C1266043Sarcomatoid Renal Cell Carcinoma1CTD_human
HSPA9C1266044Collecting Duct Carcinoma of the Kidney1CTD_human
HSPA9C1306837Papillary Renal Cell Carcinoma1CTD_human
HSPA9C2239176Liver carcinoma1CTD_human
HSPA9C4225428ANEMIA, SIDEROBLASTIC, 41GENOMICS_ENGLAND;UNIPROT
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