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Editing gene: AGFG1 (CAeditome ID:3267)

Gene summary for AGFG1

Gene summary

Gene information	Gene symbol	AGFG1
	Gene ID	3267
	Gene name	ArfGAP with FG repeats 1
	Synonyms	HRB\|RAB\|RIP
	Cytomap	2q36.3
	Type of gene	protein-coding
	Description	arf-GAP domain and FG repeat-containing protein 1HIV-1 Rev-binding proteinRab, Rev/Rex activation domain-binding proteinarf-GAP domain and FG repeats-containing protein 1hRIP, Rev interacting proteinnucleoporin-like protein RIPrev-interacting protei
	Modification date	20210518
	UniProtAcc	P52594
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
AGFG1	GO:0043231	Arf-GAP domain and FG repeat-containing protein 1	0000052

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RNA A-to-I events for AGFG1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000173744.16

RNA A-to-I editing events in Cancer.

CAediting_246364(227488918, +), CAediting_246365(227488931, +), CAediting_246366(227489945, +), CAediting_246367(227490315, +), CAediting_246368(227490323, +), CAediting_246369(227490324, +), CAediting_246370(227490391, +), CAediting_246371(227490401, +), CAediting_246372(227490415, +), CAediting_246373(227490421, +), CAediting_246374(227490431, +), CAediting_246375(227495280, +), CAediting_246376(227495341, +), CAediting_246377(227495352, +), CAediting_246378(227495356, +), CAediting_246379(227495361, +), CAediting_246380(227495365, +), CAediting_246381(227495386, +), CAediting_246382(227495387, +), CAediting_246383(227495388, +), CAediting_246384(227495415, +), CAediting_246385(227495425, +), CAediting_246386(227495435, +), CAediting_246387(227495466, +), CAediting_246388(227495490, +), CAediting_246389(227495491, +), CAediting_246390(227495825, +), CAediting_246391(227495847, +), CAediting_246392(227495848, +), CAediting_246393(227495901, +), CAediting_246394(227495902, +), CAediting_246395(227495916, +), CAediting_246396(227495975, +), CAediting_246397(227495997, +), CAediting_246398(227495998, +), CAediting_246399(227496029, +), CAediting_246400(227496030, +), CAediting_246401(227496039, +), CAediting_246402(227496046, +), CAediting_246403(227496057, +), CAediting_246404(227496120, +), CAediting_246405(227496124, +), CAediting_246406(227499384, +), CAediting_246407(227499385, +), CAediting_246408(227499390, +), CAediting_246409(227499415, +), CAediting_246410(227499420, +), CAediting_246411(227499425, +), CAediting_246412(227499430, +), CAediting_246413(227499433, +), CAediting_246414(227499454, +), CAediting_246415(227499456, +), CAediting_246416(227499461, +), CAediting_246417(227499462, +), CAediting_246418(227499463, +), CAediting_246419(227499464, +), CAediting_246420(227499487, +), CAediting_246421(227499488, +), CAediting_246422(227499489, +), CAediting_246423(227499490, +), CAediting_246424(227499519, +), CAediting_246425(227499520, +), CAediting_246426(227499526, +), CAediting_246427(227499541, +), CAediting_246428(227499542, +), CAediting_246429(227499549, +), CAediting_246430(227499552, +), CAediting_246431(227499555, +), CAediting_246432(227499560, +), CAediting_246433(227499561, +), CAediting_246434(227499565, +), CAediting_246435(227499572, +), CAediting_246436(227499590, +), CAediting_246437(227499622, +), CAediting_246438(227500886, +), CAediting_246439(227500893, +), CAediting_246440(227500910, +), CAediting_246441(227500932, +), CAediting_246442(227500996, +), CAediting_246443(227501139, +), CAediting_246444(227501167, +), CAediting_246445(227501183, +), CAediting_246446(227501207, +), CAediting_246447(227501210, +), CAediting_246448(227501246, +), CAediting_246449(227501261, +), CAediting_246450(227501281, +), CAediting_246451(227501603, +), CAediting_246452(227501733, +), CAediting_246453(227501959, +), CAediting_246454(227501962, +), CAediting_246455(227502079, +), CAediting_246456(227502344, +), CAediting_246457(227502401, +), CAediting_246458(227502420, +), CAediting_246459(227502454, +), CAediting_246460(227502460, +), CAediting_246461(227502463, +), CAediting_246462(227502977, +), CAediting_246463(227503008, +), CAediting_246464(227503031, +), CAediting_246465(227503032, +), CAediting_246466(227503038, +), CAediting_246467(227503047, +), CAediting_246468(227503071, +), CAediting_246469(227503081, +), CAediting_246470(227503082, +), CAediting_246471(227503086, +), CAediting_246472(227503090, +), CAediting_246473(227503106, +), CAediting_246474(227503118, +), CAediting_246475(227503122, +), CAediting_246476(227503129, +), CAediting_246477(227503135, +), CAediting_246478(227503148, +), CAediting_246479(227503153, +), CAediting_246480(227503219, +), CAediting_246481(227507346, +), CAediting_246482(227507386, +), CAediting_246483(227507391, +), CAediting_246484(227507415, +), CAediting_246485(227507443, +), CAediting_246486(227507456, +), CAediting_246487(227507472, +), CAediting_246488(227507474, +), CAediting_246489(227507482, +), CAediting_246490(227507488, +), CAediting_246491(227507509, +), CAediting_246492(227517346, +), CAediting_246493(227519110, +), CAediting_246494(227526673, +), CAediting_246495(227539169, +), CAediting_246496(227539187, +), CAediting_246497(227539188, +), CAediting_246498(227539209, +), CAediting_246499(227539210, +), CAediting_246500(227539223, +), CAediting_246501(227539233, +), CAediting_246502(227539234, +), CAediting_246503(227539247, +), CAediting_246504(227539265, +), CAediting_246505(227539278, +), CAediting_246506(227539281, +), CAediting_246507(227539283, +), CAediting_246508(227539285, +), CAediting_246509(227539290, +), CAediting_246510(227539291, +), CAediting_246511(227539292, +), CAediting_246512(227539293, +), CAediting_246513(227539296, +), CAediting_246514(227539300, +), CAediting_246515(227539322, +), CAediting_246516(227539332, +), CAediting_246517(227539339, +), CAediting_246518(227539345, +), CAediting_246519(227539363, +), CAediting_246520(227539373, +), CAediting_246521(227539398, +), CAediting_246522(227539430, +), CAediting_246523(227539522, +), CAediting_246524(227539541, +), CAediting_246525(227539546, +), CAediting_246526(227539571, +), CAediting_246527(227539580, +), CAediting_246528(227539610, +), CAediting_246529(227539612, +), CAediting_246530(227539614, +), CAediting_246531(227539620, +), CAediting_246532(227539638, +), CAediting_246533(227539647, +), CAediting_246534(227539665, +), CAediting_246535(227539670, +), CAediting_246536(227539680, +), CAediting_246537(227539684, +), CAediting_246538(227539690, +), CAediting_246539(227539691, +), CAediting_246540(227539708, +), CAediting_246541(227539720, +), CAediting_246542(227539855, +), CAediting_246543(227539867, +), CAediting_246544(227539875, +), CAediting_246545(227539879, +), CAediting_246546(227539881, +), CAediting_246547(227539886, +), CAediting_246548(227539899, +), CAediting_246549(227539900, +), CAediting_246550(227539910, +), CAediting_246551(227539915, +), CAediting_246552(227539931, +), CAediting_246553(227539935, +), CAediting_246554(227539936, +), CAediting_246555(227539940, +), CAediting_246556(227539953, +), CAediting_246557(227539962, +), CAediting_246558(227539965, +), CAediting_246559(227539975, +), CAediting_246560(227539977, +), CAediting_246561(227539991, +), CAediting_246562(227540001, +), CAediting_246563(227540002, +), CAediting_246564(227540016, +), CAediting_246565(227540021, +), CAediting_246566(227540036, +), CAediting_246567(227540042, +), CAediting_246568(227540045, +), CAediting_246569(227540070, +), CAediting_246570(227540071, +), CAediting_246571(227540072, +), CAediting_246572(227540098, +), CAediting_246573(227540110, +), CAediting_246574(227544234, +), CAediting_246575(227547551, +), CAediting_246576(227547627, +), CAediting_246577(227547747, +), CAediting_246578(227547757, +), CAediting_246579(227547818, +), CAediting_246580(227547839, +), CAediting_246581(227548857, +), CAediting_246582(227548858, +),

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RNA editing positional annotations for AGFG1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_246364	chr2_227488918_+	intronic
CAediting_246365	chr2_227488931_+	intronic
CAediting_246366	chr2_227489945_+	intronic
CAediting_246367	chr2_227490315_+	intronic
CAediting_246368	chr2_227490323_+	intronic
CAediting_246369	chr2_227490324_+	intronic
CAediting_246370	chr2_227490391_+	intronic
CAediting_246371	chr2_227490401_+	intronic
CAediting_246372	chr2_227490415_+	intronic
CAediting_246373	chr2_227490421_+	intronic
CAediting_246374	chr2_227490431_+	intronic
CAediting_246375	chr2_227495280_+	intronic
CAediting_246376	chr2_227495341_+	intronic
CAediting_246377	chr2_227495352_+	intronic
CAediting_246378	chr2_227495356_+	intronic
CAediting_246379	chr2_227495361_+	intronic
CAediting_246380	chr2_227495365_+	intronic
CAediting_246381	chr2_227495386_+	intronic
CAediting_246382	chr2_227495387_+	intronic
CAediting_246383	chr2_227495388_+	intronic
CAediting_246384	chr2_227495415_+	intronic
CAediting_246385	chr2_227495425_+	intronic
CAediting_246386	chr2_227495435_+	intronic
CAediting_246387	chr2_227495466_+	intronic
CAediting_246388	chr2_227495490_+	intronic
CAediting_246389	chr2_227495491_+	intronic
CAediting_246390	chr2_227495825_+	intronic
CAediting_246391	chr2_227495847_+	intronic
CAediting_246392	chr2_227495848_+	intronic
CAediting_246393	chr2_227495901_+	intronic
CAediting_246394	chr2_227495902_+	intronic
CAediting_246395	chr2_227495916_+	intronic
CAediting_246396	chr2_227495975_+	intronic
CAediting_246397	chr2_227495997_+	intronic
CAediting_246398	chr2_227495998_+	intronic
CAediting_246399	chr2_227496029_+	intronic
CAediting_246400	chr2_227496030_+	intronic
CAediting_246401	chr2_227496039_+	intronic
CAediting_246402	chr2_227496046_+	intronic
CAediting_246403	chr2_227496057_+	intronic
CAediting_246404	chr2_227496120_+	intronic
CAediting_246405	chr2_227496124_+	intronic
CAediting_246406	chr2_227499384_+	intronic
CAediting_246407	chr2_227499385_+	intronic
CAediting_246408	chr2_227499390_+	intronic
CAediting_246409	chr2_227499415_+	intronic
CAediting_246410	chr2_227499420_+	intronic
CAediting_246411	chr2_227499425_+	intronic
CAediting_246412	chr2_227499430_+	intronic
CAediting_246413	chr2_227499433_+	intronic
CAediting_246414	chr2_227499454_+	intronic
CAediting_246415	chr2_227499456_+	intronic
CAediting_246416	chr2_227499461_+	intronic
CAediting_246417	chr2_227499462_+	intronic
CAediting_246418	chr2_227499463_+	intronic
CAediting_246419	chr2_227499464_+	intronic
CAediting_246420	chr2_227499487_+	intronic
CAediting_246421	chr2_227499488_+	intronic
CAediting_246422	chr2_227499489_+	intronic
CAediting_246423	chr2_227499490_+	intronic
CAediting_246424	chr2_227499519_+	intronic
CAediting_246425	chr2_227499520_+	intronic
CAediting_246426	chr2_227499526_+	intronic
CAediting_246427	chr2_227499541_+	intronic
CAediting_246428	chr2_227499542_+	intronic
CAediting_246429	chr2_227499549_+	intronic
CAediting_246430	chr2_227499552_+	intronic
CAediting_246431	chr2_227499555_+	intronic
CAediting_246432	chr2_227499560_+	intronic
CAediting_246433	chr2_227499561_+	intronic
CAediting_246434	chr2_227499565_+	intronic
CAediting_246435	chr2_227499572_+	intronic
CAediting_246436	chr2_227499590_+	intronic
CAediting_246437	chr2_227499622_+	intronic
CAediting_246438	chr2_227500886_+	intronic
CAediting_246439	chr2_227500893_+	intronic
CAediting_246440	chr2_227500910_+	intronic
CAediting_246441	chr2_227500932_+	intronic
CAediting_246442	chr2_227500996_+	intronic
CAediting_246443	chr2_227501139_+	intronic
CAediting_246444	chr2_227501167_+	intronic
CAediting_246445	chr2_227501183_+	intronic
CAediting_246446	chr2_227501207_+	intronic
CAediting_246447	chr2_227501210_+	intronic
CAediting_246448	chr2_227501246_+	intronic
CAediting_246449	chr2_227501261_+	intronic
CAediting_246450	chr2_227501281_+	intronic
CAediting_246451	chr2_227501603_+	intronic
CAediting_246452	chr2_227501733_+	intronic
CAediting_246453	chr2_227501959_+	intronic
CAediting_246454	chr2_227501962_+	intronic
CAediting_246455	chr2_227502079_+	intronic
CAediting_246456	chr2_227502344_+	intronic
CAediting_246457	chr2_227502401_+	intronic
CAediting_246458	chr2_227502420_+	intronic
CAediting_246459	chr2_227502454_+	intronic
CAediting_246460	chr2_227502460_+	intronic
CAediting_246461	chr2_227502463_+	intronic
CAediting_246462	chr2_227502977_+	intronic
CAediting_246463	chr2_227503008_+	intronic
CAediting_246464	chr2_227503031_+	intronic
CAediting_246465	chr2_227503032_+	intronic
CAediting_246466	chr2_227503038_+	intronic
CAediting_246467	chr2_227503047_+	intronic
CAediting_246468	chr2_227503071_+	intronic
CAediting_246469	chr2_227503081_+	intronic
CAediting_246470	chr2_227503082_+	intronic
CAediting_246471	chr2_227503086_+	intronic
CAediting_246472	chr2_227503090_+	intronic
CAediting_246473	chr2_227503106_+	intronic
CAediting_246474	chr2_227503118_+	intronic
CAediting_246475	chr2_227503122_+	intronic
CAediting_246476	chr2_227503129_+	intronic
CAediting_246477	chr2_227503135_+	intronic
CAediting_246478	chr2_227503148_+	intronic
CAediting_246479	chr2_227503153_+	intronic
CAediting_246480	chr2_227503219_+	intronic
CAediting_246481	chr2_227507346_+	intronic
CAediting_246482	chr2_227507386_+	intronic
CAediting_246483	chr2_227507391_+	intronic
CAediting_246484	chr2_227507415_+	intronic
CAediting_246485	chr2_227507443_+	intronic
CAediting_246486	chr2_227507456_+	intronic
CAediting_246487	chr2_227507472_+	intronic
CAediting_246488	chr2_227507474_+	intronic
CAediting_246489	chr2_227507482_+	intronic
CAediting_246490	chr2_227507488_+	intronic
CAediting_246491	chr2_227507509_+	intronic
CAediting_246492	chr2_227517346_+	ncRNA_intronic
CAediting_246493	chr2_227519110_+	ncRNA_intronic
CAediting_246494	chr2_227526673_+	intronic
CAediting_246495	chr2_227539169_+	intronic
CAediting_246496	chr2_227539187_+	intronic
CAediting_246497	chr2_227539188_+	intronic
CAediting_246498	chr2_227539209_+	intronic
CAediting_246499	chr2_227539210_+	intronic
CAediting_246500	chr2_227539223_+	intronic
CAediting_246501	chr2_227539233_+	intronic
CAediting_246502	chr2_227539234_+	intronic
CAediting_246503	chr2_227539247_+	intronic
CAediting_246504	chr2_227539265_+	intronic
CAediting_246505	chr2_227539278_+	intronic
CAediting_246506	chr2_227539281_+	intronic
CAediting_246507	chr2_227539283_+	intronic
CAediting_246508	chr2_227539285_+	intronic
CAediting_246509	chr2_227539290_+	intronic
CAediting_246510	chr2_227539291_+	intronic
CAediting_246511	chr2_227539292_+	intronic
CAediting_246512	chr2_227539293_+	intronic
CAediting_246513	chr2_227539296_+	intronic
CAediting_246514	chr2_227539300_+	intronic
CAediting_246515	chr2_227539322_+	intronic
CAediting_246516	chr2_227539332_+	intronic
CAediting_246517	chr2_227539339_+	intronic
CAediting_246518	chr2_227539345_+	intronic
CAediting_246519	chr2_227539363_+	intronic
CAediting_246520	chr2_227539373_+	intronic
CAediting_246521	chr2_227539398_+	intronic
CAediting_246522	chr2_227539430_+	intronic
CAediting_246523	chr2_227539522_+	intronic
CAediting_246524	chr2_227539541_+	intronic
CAediting_246525	chr2_227539546_+	intronic
CAediting_246526	chr2_227539571_+	intronic
CAediting_246527	chr2_227539580_+	intronic
CAediting_246528	chr2_227539610_+	intronic
CAediting_246529	chr2_227539612_+	intronic
CAediting_246530	chr2_227539614_+	intronic
CAediting_246531	chr2_227539620_+	intronic
CAediting_246532	chr2_227539638_+	intronic
CAediting_246533	chr2_227539647_+	intronic
CAediting_246534	chr2_227539665_+	intronic
CAediting_246535	chr2_227539670_+	intronic
CAediting_246536	chr2_227539680_+	intronic
CAediting_246537	chr2_227539684_+	intronic
CAediting_246538	chr2_227539690_+	intronic
CAediting_246539	chr2_227539691_+	intronic
CAediting_246540	chr2_227539708_+	intronic
CAediting_246541	chr2_227539720_+	intronic
CAediting_246542	chr2_227539855_+	intronic
CAediting_246543	chr2_227539867_+	intronic
CAediting_246544	chr2_227539875_+	intronic
CAediting_246545	chr2_227539879_+	intronic
CAediting_246546	chr2_227539881_+	intronic
CAediting_246547	chr2_227539886_+	intronic
CAediting_246548	chr2_227539899_+	intronic
CAediting_246549	chr2_227539900_+	intronic
CAediting_246550	chr2_227539910_+	intronic
CAediting_246551	chr2_227539915_+	intronic
CAediting_246552	chr2_227539931_+	intronic
CAediting_246553	chr2_227539935_+	intronic
CAediting_246554	chr2_227539936_+	intronic
CAediting_246555	chr2_227539940_+	intronic
CAediting_246556	chr2_227539953_+	intronic
CAediting_246557	chr2_227539962_+	intronic
CAediting_246558	chr2_227539965_+	intronic
CAediting_246559	chr2_227539975_+	intronic
CAediting_246560	chr2_227539977_+	intronic
CAediting_246561	chr2_227539991_+	intronic
CAediting_246562	chr2_227540001_+	intronic
CAediting_246563	chr2_227540002_+	intronic
CAediting_246564	chr2_227540016_+	intronic
CAediting_246565	chr2_227540021_+	intronic
CAediting_246566	chr2_227540036_+	intronic
CAediting_246567	chr2_227540042_+	intronic
CAediting_246568	chr2_227540045_+	intronic
CAediting_246569	chr2_227540070_+	intronic
CAediting_246570	chr2_227540071_+	intronic
CAediting_246571	chr2_227540072_+	intronic
CAediting_246572	chr2_227540098_+	intronic
CAediting_246573	chr2_227540110_+	intronic
CAediting_246574	chr2_227544234_+	intronic
CAediting_246575	chr2_227547551_+	intronic
CAediting_246576	chr2_227547627_+	intronic
CAediting_246577	chr2_227547747_+	intronic
CAediting_246578	chr2_227547757_+	intronic
CAediting_246579	chr2_227547818_+	intronic
CAediting_246580	chr2_227547839_+	intronic
CAediting_246581	chr2_227548857_+	intronic
CAediting_246582	chr2_227548858_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_246364	chr2_227488918_+	SINE	Alu	AluSz
CAediting_246365	chr2_227488931_+	SINE	Alu	AluSz
CAediting_246366	chr2_227489945_+	SINE	Alu	AluSz6
CAediting_246367	chr2_227490315_+	SINE	Alu	AluY
CAediting_246368	chr2_227490323_+	SINE	Alu	AluY
CAediting_246369	chr2_227490324_+	SINE	Alu	AluY
CAediting_246370	chr2_227490391_+	SINE	Alu	AluY
CAediting_246371	chr2_227490401_+	SINE	Alu	AluY
CAediting_246372	chr2_227490415_+	SINE	Alu	AluY
CAediting_246373	chr2_227490421_+	SINE	Alu	AluY
CAediting_246374	chr2_227490431_+	SINE	Alu	AluY
CAediting_246375	chr2_227495280_+	SINE	Alu	AluJr
CAediting_246376	chr2_227495341_+	SINE	Alu	AluJr
CAediting_246377	chr2_227495352_+	SINE	Alu	AluJr
CAediting_246378	chr2_227495356_+	SINE	Alu	AluJr
CAediting_246379	chr2_227495361_+	SINE	Alu	AluJr
CAediting_246380	chr2_227495365_+	SINE	Alu	AluJr
CAediting_246381	chr2_227495386_+	SINE	Alu	AluJr
CAediting_246382	chr2_227495387_+	SINE	Alu	AluJr
CAediting_246383	chr2_227495388_+	SINE	Alu	AluJr
CAediting_246384	chr2_227495415_+	SINE	Alu	AluJr
CAediting_246385	chr2_227495425_+	SINE	Alu	AluJr
CAediting_246386	chr2_227495435_+	SINE	Alu	AluJr
CAediting_246387	chr2_227495466_+	SINE	Alu	AluJr
CAediting_246388	chr2_227495490_+	SINE	Alu	AluJr
CAediting_246389	chr2_227495491_+	SINE	Alu	AluJr
CAediting_246390	chr2_227495825_+	SINE	Alu	AluSz
CAediting_246391	chr2_227495847_+	SINE	Alu	AluSz
CAediting_246392	chr2_227495848_+	SINE	Alu	AluSz
CAediting_246393	chr2_227495901_+	SINE	Alu	AluSz
CAediting_246394	chr2_227495902_+	SINE	Alu	AluSz
CAediting_246395	chr2_227495916_+	SINE	Alu	AluSz
CAediting_246396	chr2_227495975_+	SINE	Alu	AluSz
CAediting_246397	chr2_227495997_+	SINE	Alu	AluSz
CAediting_246398	chr2_227495998_+	SINE	Alu	AluSz
CAediting_246399	chr2_227496029_+	SINE	Alu	AluSz
CAediting_246400	chr2_227496030_+	SINE	Alu	AluSz
CAediting_246401	chr2_227496039_+	SINE	Alu	AluSz
CAediting_246402	chr2_227496046_+	SINE	Alu	AluSz
CAediting_246403	chr2_227496057_+	SINE	Alu	AluSz
CAediting_246404	chr2_227496120_+	SINE	Alu	AluSz
CAediting_246405	chr2_227496124_+	SINE	Alu	AluSz
CAediting_246406	chr2_227499384_+	SINE	Alu	AluSz6
CAediting_246407	chr2_227499385_+	SINE	Alu	AluSz6
CAediting_246408	chr2_227499390_+	SINE	Alu	AluSz6
CAediting_246409	chr2_227499415_+	SINE	Alu	AluSz6
CAediting_246410	chr2_227499420_+	SINE	Alu	AluSz6
CAediting_246411	chr2_227499425_+	SINE	Alu	AluSz6
CAediting_246412	chr2_227499430_+	SINE	Alu	AluSz6
CAediting_246413	chr2_227499433_+	SINE	Alu	AluSz6
CAediting_246414	chr2_227499454_+	SINE	Alu	AluSz6
CAediting_246415	chr2_227499456_+	SINE	Alu	AluSz6
CAediting_246416	chr2_227499461_+	SINE	Alu	AluSz6
CAediting_246417	chr2_227499462_+	SINE	Alu	AluSz6
CAediting_246418	chr2_227499463_+	SINE	Alu	AluSz6
CAediting_246419	chr2_227499464_+	SINE	Alu	AluSz6
CAediting_246420	chr2_227499487_+	SINE	Alu	AluSz6
CAediting_246421	chr2_227499488_+	SINE	Alu	AluSz6
CAediting_246422	chr2_227499489_+	SINE	Alu	AluSz6
CAediting_246423	chr2_227499490_+	SINE	Alu	AluSz6
CAediting_246424	chr2_227499519_+	SINE	Alu	AluSz6
CAediting_246425	chr2_227499520_+	SINE	Alu	AluSz6
CAediting_246426	chr2_227499526_+	SINE	Alu	AluSz6
CAediting_246427	chr2_227499541_+	SINE	Alu	AluSz6
CAediting_246428	chr2_227499542_+	SINE	Alu	AluSz6
CAediting_246429	chr2_227499549_+	SINE	Alu	AluSz6
CAediting_246430	chr2_227499552_+	SINE	Alu	AluSz6
CAediting_246431	chr2_227499555_+	SINE	Alu	AluSz6
CAediting_246432	chr2_227499560_+	SINE	Alu	AluSz6
CAediting_246433	chr2_227499561_+	SINE	Alu	AluSz6
CAediting_246434	chr2_227499565_+	SINE	Alu	AluSz6
CAediting_246435	chr2_227499572_+	SINE	Alu	AluSz6
CAediting_246436	chr2_227499590_+	SINE	Alu	AluSz6
CAediting_246437	chr2_227499622_+	SINE	Alu	AluSz6
CAediting_246438	chr2_227500886_+	SINE	Alu	AluSq
CAediting_246439	chr2_227500893_+	SINE	Alu	AluSq
CAediting_246440	chr2_227500910_+	SINE	Alu	AluSq
CAediting_246441	chr2_227500932_+	SINE	Alu	AluSq
CAediting_246442	chr2_227500996_+	SINE	Alu	AluSq
CAediting_246443	chr2_227501139_+	SINE	Alu	AluSq2
CAediting_246444	chr2_227501167_+	SINE	Alu	AluSq2
CAediting_246445	chr2_227501183_+	SINE	Alu	AluSq2
CAediting_246446	chr2_227501207_+	SINE	Alu	AluSq2
CAediting_246447	chr2_227501210_+	SINE	Alu	AluSq2
CAediting_246448	chr2_227501246_+	SINE	Alu	AluSq2
CAediting_246449	chr2_227501261_+	SINE	Alu	AluSq2
CAediting_246450	chr2_227501281_+	SINE	Alu	AluSq2
CAediting_246451	chr2_227501603_+	SINE	Alu	AluJb
CAediting_246452	chr2_227501733_+	SINE	Alu	AluJb
CAediting_246453	chr2_227501959_+	SINE	Alu	AluJr
CAediting_246454	chr2_227501962_+	SINE	Alu	AluJr
CAediting_246455	chr2_227502079_+	SINE	Alu	AluJr
CAediting_246456	chr2_227502344_+	SINE	Alu	AluSz6
CAediting_246457	chr2_227502401_+	SINE	Alu	AluSz6
CAediting_246458	chr2_227502420_+	SINE	Alu	AluSz6
CAediting_246459	chr2_227502454_+	SINE	Alu	AluSz6
CAediting_246460	chr2_227502460_+	SINE	Alu	AluSz6
CAediting_246461	chr2_227502463_+	SINE	Alu	AluSz6
CAediting_246462	chr2_227502977_+	SINE	Alu	AluJb
CAediting_246463	chr2_227503008_+	SINE	Alu	AluJb
CAediting_246464	chr2_227503031_+	SINE	Alu	AluJb
CAediting_246465	chr2_227503032_+	SINE	Alu	AluJb
CAediting_246466	chr2_227503038_+	SINE	Alu	AluJb
CAediting_246467	chr2_227503047_+	SINE	Alu	AluJb
CAediting_246468	chr2_227503071_+	SINE	Alu	AluJb
CAediting_246469	chr2_227503081_+	SINE	Alu	AluJb
CAediting_246470	chr2_227503082_+	SINE	Alu	AluJb
CAediting_246471	chr2_227503086_+	SINE	Alu	AluJb
CAediting_246472	chr2_227503090_+	SINE	Alu	AluJb
CAediting_246473	chr2_227503106_+	SINE	Alu	AluJb
CAediting_246474	chr2_227503118_+	SINE	Alu	AluJb
CAediting_246475	chr2_227503122_+	SINE	Alu	AluJb
CAediting_246476	chr2_227503129_+	SINE	Alu	AluJb
CAediting_246477	chr2_227503135_+	SINE	Alu	AluJb
CAediting_246478	chr2_227503148_+	SINE	Alu	AluJb
CAediting_246479	chr2_227503153_+	SINE	Alu	AluJb
CAediting_246480	chr2_227503219_+	SINE	Alu	AluJb
CAediting_246481	chr2_227507346_+	SINE	Alu	AluY
CAediting_246482	chr2_227507386_+	SINE	Alu	AluY
CAediting_246483	chr2_227507391_+	SINE	Alu	AluY
CAediting_246484	chr2_227507415_+	SINE	Alu	AluY
CAediting_246485	chr2_227507443_+	SINE	Alu	AluY
CAediting_246486	chr2_227507456_+	SINE	Alu	AluY
CAediting_246487	chr2_227507472_+	SINE	Alu	AluY
CAediting_246488	chr2_227507474_+	SINE	Alu	AluY
CAediting_246489	chr2_227507482_+	SINE	Alu	AluY
CAediting_246490	chr2_227507488_+	SINE	Alu	AluY
CAediting_246491	chr2_227507509_+	SINE	Alu	AluY
CAediting_246492	chr2_227517346_+	SINE	Alu	AluSc5
CAediting_246493	chr2_227519110_+	SINE	Alu	AluJb
CAediting_246494	chr2_227526673_+	SINE	Alu	AluSx1
CAediting_246495	chr2_227539169_+	SINE	Alu	AluSx
CAediting_246496	chr2_227539187_+	SINE	Alu	AluSx
CAediting_246497	chr2_227539188_+	SINE	Alu	AluSx
CAediting_246498	chr2_227539209_+	SINE	Alu	AluSx
CAediting_246499	chr2_227539210_+	SINE	Alu	AluSx
CAediting_246500	chr2_227539223_+	SINE	Alu	AluSx
CAediting_246501	chr2_227539233_+	SINE	Alu	AluSx
CAediting_246502	chr2_227539234_+	SINE	Alu	AluSx
CAediting_246503	chr2_227539247_+	SINE	Alu	AluSx
CAediting_246504	chr2_227539265_+	SINE	Alu	AluSx
CAediting_246505	chr2_227539278_+	SINE	Alu	AluSx
CAediting_246506	chr2_227539281_+	SINE	Alu	AluSx
CAediting_246507	chr2_227539283_+	SINE	Alu	AluSx
CAediting_246508	chr2_227539285_+	SINE	Alu	AluSx
CAediting_246509	chr2_227539290_+	SINE	Alu	AluSx
CAediting_246510	chr2_227539291_+	SINE	Alu	AluSx
CAediting_246511	chr2_227539292_+	SINE	Alu	AluSx
CAediting_246512	chr2_227539293_+	SINE	Alu	AluSx
CAediting_246513	chr2_227539296_+	SINE	Alu	AluSx
CAediting_246514	chr2_227539300_+	SINE	Alu	AluSx
CAediting_246515	chr2_227539322_+	SINE	Alu	AluSx
CAediting_246516	chr2_227539332_+	SINE	Alu	AluSx
CAediting_246517	chr2_227539339_+	SINE	Alu	AluSx
CAediting_246518	chr2_227539345_+	SINE	Alu	AluSx
CAediting_246519	chr2_227539363_+	SINE	Alu	AluSx
CAediting_246520	chr2_227539373_+	SINE	Alu	AluSx
CAediting_246521	chr2_227539398_+	SINE	Alu	AluSx
CAediting_246522	chr2_227539430_+	SINE	Alu	AluSx
CAediting_246523	chr2_227539522_+	SINE	Alu	AluJr4
CAediting_246524	chr2_227539541_+	SINE	Alu	AluJr4
CAediting_246525	chr2_227539546_+	SINE	Alu	AluJr4
CAediting_246526	chr2_227539571_+	SINE	Alu	AluJr4
CAediting_246527	chr2_227539580_+	SINE	Alu	AluJr4
CAediting_246528	chr2_227539610_+	SINE	Alu	AluJr4
CAediting_246529	chr2_227539612_+	SINE	Alu	AluJr4
CAediting_246530	chr2_227539614_+	SINE	Alu	AluJr4
CAediting_246531	chr2_227539620_+	SINE	Alu	AluJr4
CAediting_246532	chr2_227539638_+	SINE	Alu	AluJr4
CAediting_246533	chr2_227539647_+	SINE	Alu	AluJr4
CAediting_246534	chr2_227539665_+	SINE	Alu	AluJr4
CAediting_246535	chr2_227539670_+	SINE	Alu	AluJr4
CAediting_246536	chr2_227539680_+	SINE	Alu	AluJr4
CAediting_246537	chr2_227539684_+	SINE	Alu	AluJr4
CAediting_246538	chr2_227539690_+	SINE	Alu	AluJr4
CAediting_246539	chr2_227539691_+	SINE	Alu	AluJr4
CAediting_246540	chr2_227539708_+	SINE	Alu	AluJr4
CAediting_246541	chr2_227539720_+	SINE	Alu	AluJr4
CAediting_246542	chr2_227539855_+	SINE	Alu	AluSz6
CAediting_246543	chr2_227539867_+	SINE	Alu	AluSz6
CAediting_246544	chr2_227539875_+	SINE	Alu	AluSz6
CAediting_246545	chr2_227539879_+	SINE	Alu	AluSz6
CAediting_246546	chr2_227539881_+	SINE	Alu	AluSz6
CAediting_246547	chr2_227539886_+	SINE	Alu	AluSz6
CAediting_246548	chr2_227539899_+	SINE	Alu	AluSz6
CAediting_246549	chr2_227539900_+	SINE	Alu	AluSz6
CAediting_246550	chr2_227539910_+	SINE	Alu	AluSz6
CAediting_246551	chr2_227539915_+	SINE	Alu	AluSz6
CAediting_246552	chr2_227539931_+	SINE	Alu	AluSz6
CAediting_246553	chr2_227539935_+	SINE	Alu	AluSz6
CAediting_246554	chr2_227539936_+	SINE	Alu	AluSz6
CAediting_246555	chr2_227539940_+	SINE	Alu	AluSz6
CAediting_246556	chr2_227539953_+	SINE	Alu	AluSz6
CAediting_246557	chr2_227539962_+	SINE	Alu	AluSz6
CAediting_246558	chr2_227539965_+	SINE	Alu	AluSz6
CAediting_246559	chr2_227539975_+	SINE	Alu	AluSz6
CAediting_246560	chr2_227539977_+	SINE	Alu	AluSz6
CAediting_246561	chr2_227539991_+	SINE	Alu	AluSz6
CAediting_246562	chr2_227540001_+	SINE	Alu	AluSz6
CAediting_246563	chr2_227540002_+	SINE	Alu	AluSz6
CAediting_246564	chr2_227540016_+	SINE	Alu	AluSz6
CAediting_246565	chr2_227540021_+	SINE	Alu	AluSz6
CAediting_246566	chr2_227540036_+	SINE	Alu	AluSz6
CAediting_246567	chr2_227540042_+	SINE	Alu	AluSz6
CAediting_246568	chr2_227540045_+	SINE	Alu	AluSz6
CAediting_246569	chr2_227540070_+	SINE	Alu	AluSz6
CAediting_246570	chr2_227540071_+	SINE	Alu	AluSz6
CAediting_246571	chr2_227540072_+	SINE	Alu	AluSz6
CAediting_246572	chr2_227540098_+	SINE	Alu	AluSz6
CAediting_246573	chr2_227540110_+	SINE	Alu	AluSz6
CAediting_246574	chr2_227544234_+	SINE	Alu	AluY
CAediting_246575	chr2_227547551_+	LINE	L1	L1MB7
CAediting_246576	chr2_227547627_+	LINE	L1	L1MB7
CAediting_246577	chr2_227547747_+	LINE	L1	L1MB7
CAediting_246578	chr2_227547757_+	LINE	L1	L1MB7
CAediting_246579	chr2_227547818_+	LINE	L1	L1MB7
CAediting_246580	chr2_227547839_+	LINE	L1	L1MB7
CAediting_246581	chr2_227548857_+	SINE	Alu	AluY
CAediting_246582	chr2_227548858_+	SINE	Alu	AluY

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RNA A-to-I editing events in the alternative splicing sites for AGFG1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000173744.16.AGFG1.

Correlation between RNA A-to-I editing and PSI for ENSG00000173744.16.AGFG1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for AGFG1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for AGFG1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for AGFG1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000173744.16	ENST00000409315	hsa-miR-200b-3p	227554815	227554821	7mer-m8	227554801	227554822	144	-9.51

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for AGFG1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for AGFG1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_246550	chr2_227539910_+	.	.	0.0386023688707781	0.173179103429837	.	.

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Relation with cancer stages for AGFG1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for AGFG1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_246550	chr2_227539910_+	0.00148249639577647	0.00637091	9.68038

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RelatedDrugs for AGFG1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for AGFG1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
AGFG1	C0023893	Liver Cirrhosis, Experimental	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene