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Editing gene: HPCAL1 (CAeditome ID:3241)

Gene summary for HPCAL1

Gene summary

Gene information	Gene symbol	HPCAL1
	Gene ID	3241
	Gene name	hippocalcin like 1
	Synonyms	BDR1\|HLP2\|VILIP-3
	Cytomap	2p25.1
	Type of gene	protein-coding
	Description	hippocalcin-like protein 1calcium-binding protein BDR-1visinin-like protein 3
	Modification date	20210518
	UniProtAcc	P37235
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for HPCAL1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000115756.11

RNA A-to-I editing events in Cancer.

CAediting_155985(10308931, +), CAediting_155986(10308960, +), CAediting_155987(10309058, +), CAediting_155988(10309161, +), CAediting_155989(10309190, +), CAediting_155990(10315886, +), CAediting_155991(10315919, +), CAediting_155992(10320282, +), CAediting_155993(10320283, +), CAediting_155994(10320300, +), CAediting_155995(10320301, +), CAediting_155996(10320353, +), CAediting_155997(10320379, +), CAediting_155998(10320394, +), CAediting_155999(10320421, +), CAediting_156000(10320493, +), CAediting_156001(10320540, +), CAediting_156002(10320546, +), CAediting_156003(10320554, +), CAediting_156004(10320555, +), CAediting_156005(10320569, +), CAediting_156006(10321002, +), CAediting_156007(10321012, +), CAediting_156008(10321013, +), CAediting_156009(10321038, +), CAediting_156010(10321042, +), CAediting_156011(10321043, +), CAediting_156012(10321046, +), CAediting_156013(10321047, +), CAediting_156014(10321048, +), CAediting_156015(10321056, +), CAediting_156016(10321057, +), CAediting_156017(10321065, +), CAediting_156018(10321132, +), CAediting_156019(10321165, +), CAediting_156020(10321174, +), CAediting_156021(10321222, +), CAediting_156022(10321229, +), CAediting_156023(10321233, +), CAediting_156024(10321236, +), CAediting_156025(10321246, +), CAediting_156026(10321249, +), CAediting_156027(10321360, +), CAediting_156028(10322438, +), CAediting_156029(10324952, +), CAediting_156030(10334277, +), CAediting_156031(10334282, +), CAediting_156032(10334301, +), CAediting_156033(10334387, +), CAediting_156034(10334393, +), CAediting_156035(10334401, +), CAediting_156036(10334428, +), CAediting_156037(10334433, +), CAediting_156038(10334453, +), CAediting_156039(10334465, +), CAediting_156040(10334785, +), CAediting_156041(10334786, +), CAediting_156042(10334819, +), CAediting_156043(10334878, +), CAediting_156044(10334879, +), CAediting_156045(10334938, +), CAediting_156046(10334939, +), CAediting_156047(10336845, +), CAediting_156048(10336870, +), CAediting_156049(10336987, +), CAediting_156050(10336988, +), CAediting_156051(10337013, +), CAediting_156052(10341274, +), CAediting_156053(10341289, +), CAediting_156054(10341305, +), CAediting_156055(10341308, +), CAediting_156056(10341309, +), CAediting_156057(10341310, +), CAediting_156058(10341314, +), CAediting_156059(10341366, +), CAediting_156060(10341376, +), CAediting_156061(10341896, +), CAediting_156062(10341916, +), CAediting_156063(10341924, +), CAediting_156064(10342049, +), CAediting_156065(10342109, +), CAediting_156066(10345518, +), CAediting_156067(10345536, +), CAediting_156068(10345537, +), CAediting_156069(10345550, +), CAediting_156070(10345574, +), CAediting_156071(10345596, +), CAediting_156072(10345646, +), CAediting_156073(10345692, +), CAediting_156074(10345709, +), CAediting_156075(10345725, +), CAediting_156076(10348195, +), CAediting_156077(10348291, +), CAediting_156078(10348293, +), CAediting_156079(10348502, +), CAediting_156080(10348509, +), CAediting_156081(10348530, +), CAediting_156082(10348531, +), CAediting_156083(10348582, +), CAediting_156084(10348664, +), CAediting_156085(10348689, +), CAediting_156086(10349446, +), CAediting_156087(10349516, +), CAediting_156088(10349518, +), CAediting_156089(10349524, +), CAediting_156090(10349525, +), CAediting_156091(10349526, +), CAediting_156092(10349537, +), CAediting_156093(10349541, +), CAediting_156094(10349542, +), CAediting_156095(10349544, +), CAediting_156096(10349546, +), CAediting_156097(10349548, +), CAediting_156098(10349551, +), CAediting_156099(10349552, +), CAediting_156100(10349556, +), CAediting_156101(10349588, +), CAediting_156102(10349592, +), CAediting_156103(10349605, +), CAediting_156104(10349609, +), CAediting_156105(10349612, +), CAediting_156106(10349624, +), CAediting_156107(10349644, +), CAediting_156108(10349658, +), CAediting_156109(10349691, +), CAediting_156110(10350410, +), CAediting_156111(10350411, +), CAediting_156112(10350414, +), CAediting_156113(10350415, +), CAediting_156114(10350423, +), CAediting_156115(10350428, +), CAediting_156116(10350453, +), CAediting_156117(10350477, +), CAediting_156118(10350478, +), CAediting_156119(10350486, +), CAediting_156120(10350501, +), CAediting_156121(10350509, +), CAediting_156122(10350512, +), CAediting_156123(10350514, +), CAediting_156124(10351594, +), CAediting_156125(10351612, +), CAediting_156126(10351684, +), CAediting_156127(10352003, +), CAediting_156128(10352021, +), CAediting_156129(10352044, +), CAediting_156130(10352060, +), CAediting_156131(10352086, +), CAediting_156132(10352091, +), CAediting_156133(10352105, +), CAediting_156134(10352123, +), CAediting_156135(10352132, +), CAediting_156136(10353589, +), CAediting_156137(10353635, +), CAediting_156138(10353647, +), CAediting_156139(10353661, +), CAediting_156140(10353667, +), CAediting_156141(10353668, +), CAediting_156142(10353672, +), CAediting_156143(10353698, +), CAediting_156144(10353710, +), CAediting_156145(10353750, +), CAediting_156146(10353765, +), CAediting_156147(10353854, +), CAediting_156148(10356992, +), CAediting_156149(10357033, +), CAediting_156150(10360512, +), CAediting_156151(10361747, +), CAediting_156152(10361756, +), CAediting_156153(10361797, +), CAediting_156154(10361820, +), CAediting_156155(10361821, +), CAediting_156156(10361891, +), CAediting_156157(10361897, +), CAediting_156158(10361960, +), CAediting_156159(10363022, +), CAediting_156160(10363036, +), CAediting_156161(10363041, +), CAediting_156162(10363078, +), CAediting_156163(10363105, +), CAediting_156164(10363108, +), CAediting_156165(10367310, +), CAediting_156166(10367312, +), CAediting_156167(10367356, +), CAediting_156168(10367380, +), CAediting_156169(10376642, +), CAediting_156170(10379094, +), CAediting_156171(10383123, +), CAediting_156172(10383134, +), CAediting_156173(10383135, +), CAediting_156174(10383140, +), CAediting_156175(10383144, +), CAediting_156176(10383190, +), CAediting_156177(10383193, +), CAediting_156178(10383220, +), CAediting_156179(10383222, +), CAediting_156180(10383225, +), CAediting_156181(10383261, +), CAediting_156182(10383265, +), CAediting_156183(10383287, +), CAediting_156184(10383321, +), CAediting_156185(10383332, +), CAediting_156186(10383424, +), CAediting_156187(10383427, +), CAediting_156188(10383443, +), CAediting_156189(10383456, +), CAediting_156190(10383457, +), CAediting_156191(10383463, +), CAediting_156192(10383466, +), CAediting_156193(10383467, +), CAediting_156194(10383480, +), CAediting_156195(10383488, +), CAediting_156196(10383489, +), CAediting_156197(10383492, +), CAediting_156198(10383504, +), CAediting_156199(10383524, +), CAediting_156200(10383529, +), CAediting_156201(10383543, +), CAediting_156202(10383610, +), CAediting_156203(10383615, +), CAediting_156204(10383625, +), CAediting_156205(10383640, +), CAediting_156206(10392224, +), CAediting_156207(10392231, +), CAediting_156208(10393851, +), CAediting_156209(10393853, +), CAediting_156210(10393876, +), CAediting_156211(10393882, +), CAediting_156212(10393890, +), CAediting_156213(10403622, +), CAediting_156214(10417108, +), CAediting_156215(10417353, +), CAediting_156216(10418159, +), CAediting_156217(10418235, +), CAediting_156218(10418327, +), CAediting_156219(10418938, +), CAediting_156220(10418955, +), CAediting_156221(10419090, +), CAediting_156222(10419131, +), CAediting_156223(10420260, +), CAediting_156224(10420385, +), CAediting_156225(10420401, +), CAediting_156226(10420405, +), CAediting_156227(10420431, +), CAediting_156228(10420448, +), CAediting_156229(10420464, +), CAediting_156230(10420861, +), CAediting_156231(10420878, +), CAediting_156232(10420961, +), CAediting_156233(10420975, +), CAediting_156234(10420995, +), CAediting_156235(10421010, +), CAediting_156236(10421026, +), CAediting_156237(10421452, +), CAediting_156238(10421505, +), CAediting_156239(10421517, +), CAediting_156240(10421564, +), CAediting_156241(10421580, +), CAediting_156242(10421621, +),

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RNA editing positional annotations for HPCAL1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_155985	chr2_10308931_+	intronic
CAediting_155986	chr2_10308960_+	intronic
CAediting_155987	chr2_10309058_+	intronic
CAediting_155988	chr2_10309161_+	intronic
CAediting_155989	chr2_10309190_+	intronic
CAediting_155990	chr2_10315886_+	intronic
CAediting_155991	chr2_10315919_+	intronic
CAediting_155992	chr2_10320282_+	intronic
CAediting_155993	chr2_10320283_+	intronic
CAediting_155994	chr2_10320300_+	intronic
CAediting_155995	chr2_10320301_+	intronic
CAediting_155996	chr2_10320353_+	intronic
CAediting_155997	chr2_10320379_+	intronic
CAediting_155998	chr2_10320394_+	intronic
CAediting_155999	chr2_10320421_+	intronic
CAediting_156000	chr2_10320493_+	intronic
CAediting_156001	chr2_10320540_+	intronic
CAediting_156002	chr2_10320546_+	intronic
CAediting_156003	chr2_10320554_+	intronic
CAediting_156004	chr2_10320555_+	intronic
CAediting_156005	chr2_10320569_+	intronic
CAediting_156006	chr2_10321002_+	intronic
CAediting_156007	chr2_10321012_+	intronic
CAediting_156008	chr2_10321013_+	intronic
CAediting_156009	chr2_10321038_+	intronic
CAediting_156010	chr2_10321042_+	intronic
CAediting_156011	chr2_10321043_+	intronic
CAediting_156012	chr2_10321046_+	intronic
CAediting_156013	chr2_10321047_+	intronic
CAediting_156014	chr2_10321048_+	intronic
CAediting_156015	chr2_10321056_+	intronic
CAediting_156016	chr2_10321057_+	intronic
CAediting_156017	chr2_10321065_+	intronic
CAediting_156018	chr2_10321132_+	intronic
CAediting_156019	chr2_10321165_+	intronic
CAediting_156020	chr2_10321174_+	intronic
CAediting_156021	chr2_10321222_+	intronic
CAediting_156022	chr2_10321229_+	intronic
CAediting_156023	chr2_10321233_+	intronic
CAediting_156024	chr2_10321236_+	intronic
CAediting_156025	chr2_10321246_+	intronic
CAediting_156026	chr2_10321249_+	intronic
CAediting_156027	chr2_10321360_+	intronic
CAediting_156028	chr2_10322438_+	intronic
CAediting_156029	chr2_10324952_+	intronic
CAediting_156030	chr2_10334277_+	intronic
CAediting_156031	chr2_10334282_+	intronic
CAediting_156032	chr2_10334301_+	intronic
CAediting_156033	chr2_10334387_+	intronic
CAediting_156034	chr2_10334393_+	intronic
CAediting_156035	chr2_10334401_+	intronic
CAediting_156036	chr2_10334428_+	intronic
CAediting_156037	chr2_10334433_+	intronic
CAediting_156038	chr2_10334453_+	intronic
CAediting_156039	chr2_10334465_+	intronic
CAediting_156040	chr2_10334785_+	intronic
CAediting_156041	chr2_10334786_+	intronic
CAediting_156042	chr2_10334819_+	intronic
CAediting_156043	chr2_10334878_+	intronic
CAediting_156044	chr2_10334879_+	intronic
CAediting_156045	chr2_10334938_+	intronic
CAediting_156046	chr2_10334939_+	intronic
CAediting_156047	chr2_10336845_+	intronic
CAediting_156048	chr2_10336870_+	intronic
CAediting_156049	chr2_10336987_+	intronic
CAediting_156050	chr2_10336988_+	intronic
CAediting_156051	chr2_10337013_+	intronic
CAediting_156052	chr2_10341274_+	intronic
CAediting_156053	chr2_10341289_+	intronic
CAediting_156054	chr2_10341305_+	intronic
CAediting_156055	chr2_10341308_+	intronic
CAediting_156056	chr2_10341309_+	intronic
CAediting_156057	chr2_10341310_+	intronic
CAediting_156058	chr2_10341314_+	intronic
CAediting_156059	chr2_10341366_+	intronic
CAediting_156060	chr2_10341376_+	intronic
CAediting_156061	chr2_10341896_+	intronic
CAediting_156062	chr2_10341916_+	intronic
CAediting_156063	chr2_10341924_+	intronic
CAediting_156064	chr2_10342049_+	intronic
CAediting_156065	chr2_10342109_+	intronic
CAediting_156066	chr2_10345518_+	intronic
CAediting_156067	chr2_10345536_+	intronic
CAediting_156068	chr2_10345537_+	intronic
CAediting_156069	chr2_10345550_+	intronic
CAediting_156070	chr2_10345574_+	intronic
CAediting_156071	chr2_10345596_+	intronic
CAediting_156072	chr2_10345646_+	intronic
CAediting_156073	chr2_10345692_+	intronic
CAediting_156074	chr2_10345709_+	intronic
CAediting_156075	chr2_10345725_+	intronic
CAediting_156076	chr2_10348195_+	intronic
CAediting_156077	chr2_10348291_+	intronic
CAediting_156078	chr2_10348293_+	intronic
CAediting_156079	chr2_10348502_+	intronic
CAediting_156080	chr2_10348509_+	intronic
CAediting_156081	chr2_10348530_+	intronic
CAediting_156082	chr2_10348531_+	intronic
CAediting_156083	chr2_10348582_+	intronic
CAediting_156084	chr2_10348664_+	intronic
CAediting_156085	chr2_10348689_+	intronic
CAediting_156086	chr2_10349446_+	intronic
CAediting_156087	chr2_10349516_+	intronic
CAediting_156088	chr2_10349518_+	intronic
CAediting_156089	chr2_10349524_+	intronic
CAediting_156090	chr2_10349525_+	intronic
CAediting_156091	chr2_10349526_+	intronic
CAediting_156092	chr2_10349537_+	intronic
CAediting_156093	chr2_10349541_+	intronic
CAediting_156094	chr2_10349542_+	intronic
CAediting_156095	chr2_10349544_+	intronic
CAediting_156096	chr2_10349546_+	intronic
CAediting_156097	chr2_10349548_+	intronic
CAediting_156098	chr2_10349551_+	intronic
CAediting_156099	chr2_10349552_+	intronic
CAediting_156100	chr2_10349556_+	intronic
CAediting_156101	chr2_10349588_+	intronic
CAediting_156102	chr2_10349592_+	intronic
CAediting_156103	chr2_10349605_+	intronic
CAediting_156104	chr2_10349609_+	intronic
CAediting_156105	chr2_10349612_+	intronic
CAediting_156106	chr2_10349624_+	intronic
CAediting_156107	chr2_10349644_+	intronic
CAediting_156108	chr2_10349658_+	intronic
CAediting_156109	chr2_10349691_+	intronic
CAediting_156110	chr2_10350410_+	intronic
CAediting_156111	chr2_10350411_+	intronic
CAediting_156112	chr2_10350414_+	intronic
CAediting_156113	chr2_10350415_+	intronic
CAediting_156114	chr2_10350423_+	intronic
CAediting_156115	chr2_10350428_+	intronic
CAediting_156116	chr2_10350453_+	intronic
CAediting_156117	chr2_10350477_+	intronic
CAediting_156118	chr2_10350478_+	intronic
CAediting_156119	chr2_10350486_+	intronic
CAediting_156120	chr2_10350501_+	intronic
CAediting_156121	chr2_10350509_+	intronic
CAediting_156122	chr2_10350512_+	intronic
CAediting_156123	chr2_10350514_+	intronic
CAediting_156124	chr2_10351594_+	intronic
CAediting_156125	chr2_10351612_+	intronic
CAediting_156126	chr2_10351684_+	intronic
CAediting_156127	chr2_10352003_+	intronic
CAediting_156128	chr2_10352021_+	intronic
CAediting_156129	chr2_10352044_+	intronic
CAediting_156130	chr2_10352060_+	intronic
CAediting_156131	chr2_10352086_+	intronic
CAediting_156132	chr2_10352091_+	intronic
CAediting_156133	chr2_10352105_+	intronic
CAediting_156134	chr2_10352123_+	intronic
CAediting_156135	chr2_10352132_+	intronic
CAediting_156136	chr2_10353589_+	intronic
CAediting_156137	chr2_10353635_+	intronic
CAediting_156138	chr2_10353647_+	intronic
CAediting_156139	chr2_10353661_+	intronic
CAediting_156140	chr2_10353667_+	intronic
CAediting_156141	chr2_10353668_+	intronic
CAediting_156142	chr2_10353672_+	intronic
CAediting_156143	chr2_10353698_+	intronic
CAediting_156144	chr2_10353710_+	intronic
CAediting_156145	chr2_10353750_+	intronic
CAediting_156146	chr2_10353765_+	intronic
CAediting_156147	chr2_10353854_+	intronic
CAediting_156148	chr2_10356992_+	intronic
CAediting_156149	chr2_10357033_+	intronic
CAediting_156150	chr2_10360512_+	intronic
CAediting_156151	chr2_10361747_+	intronic
CAediting_156152	chr2_10361756_+	intronic
CAediting_156153	chr2_10361797_+	intronic
CAediting_156154	chr2_10361820_+	intronic
CAediting_156155	chr2_10361821_+	intronic
CAediting_156156	chr2_10361891_+	intronic
CAediting_156157	chr2_10361897_+	intronic
CAediting_156158	chr2_10361960_+	intronic
CAediting_156159	chr2_10363022_+	intronic
CAediting_156160	chr2_10363036_+	intronic
CAediting_156161	chr2_10363041_+	intronic
CAediting_156162	chr2_10363078_+	intronic
CAediting_156163	chr2_10363105_+	intronic
CAediting_156164	chr2_10363108_+	intronic
CAediting_156165	chr2_10367310_+	intronic
CAediting_156166	chr2_10367312_+	intronic
CAediting_156167	chr2_10367356_+	intronic
CAediting_156168	chr2_10367380_+	intronic
CAediting_156169	chr2_10376642_+	intronic
CAediting_156170	chr2_10379094_+	intronic
CAediting_156171	chr2_10383123_+	intronic
CAediting_156172	chr2_10383134_+	intronic
CAediting_156173	chr2_10383135_+	intronic
CAediting_156174	chr2_10383140_+	intronic
CAediting_156175	chr2_10383144_+	intronic
CAediting_156176	chr2_10383190_+	intronic
CAediting_156177	chr2_10383193_+	intronic
CAediting_156178	chr2_10383220_+	intronic
CAediting_156179	chr2_10383222_+	intronic
CAediting_156180	chr2_10383225_+	intronic
CAediting_156181	chr2_10383261_+	intronic
CAediting_156182	chr2_10383265_+	intronic
CAediting_156183	chr2_10383287_+	intronic
CAediting_156184	chr2_10383321_+	intronic
CAediting_156185	chr2_10383332_+	intronic
CAediting_156186	chr2_10383424_+	intronic
CAediting_156187	chr2_10383427_+	intronic
CAediting_156188	chr2_10383443_+	intronic
CAediting_156189	chr2_10383456_+	intronic
CAediting_156190	chr2_10383457_+	intronic
CAediting_156191	chr2_10383463_+	intronic
CAediting_156192	chr2_10383466_+	intronic
CAediting_156193	chr2_10383467_+	intronic
CAediting_156194	chr2_10383480_+	intronic
CAediting_156195	chr2_10383488_+	intronic
CAediting_156196	chr2_10383489_+	intronic
CAediting_156197	chr2_10383492_+	intronic
CAediting_156198	chr2_10383504_+	intronic
CAediting_156199	chr2_10383524_+	intronic
CAediting_156200	chr2_10383529_+	intronic
CAediting_156201	chr2_10383543_+	intronic
CAediting_156202	chr2_10383610_+	intronic
CAediting_156203	chr2_10383615_+	intronic
CAediting_156204	chr2_10383625_+	intronic
CAediting_156205	chr2_10383640_+	intronic
CAediting_156206	chr2_10392224_+	intronic
CAediting_156207	chr2_10392231_+	intronic
CAediting_156208	chr2_10393851_+	intronic
CAediting_156209	chr2_10393853_+	intronic
CAediting_156210	chr2_10393876_+	intronic
CAediting_156211	chr2_10393882_+	intronic
CAediting_156212	chr2_10393890_+	intronic
CAediting_156213	chr2_10403622_+	intronic
CAediting_156214	chr2_10417108_+	intronic
CAediting_156215	chr2_10417353_+	intronic
CAediting_156216	chr2_10418159_+	intronic
CAediting_156217	chr2_10418235_+	intronic
CAediting_156218	chr2_10418327_+	intronic
CAediting_156219	chr2_10418938_+	intronic
CAediting_156220	chr2_10418955_+	intronic
CAediting_156221	chr2_10419090_+	intronic
CAediting_156222	chr2_10419131_+	intronic
CAediting_156223	chr2_10420260_+	intronic
CAediting_156224	chr2_10420385_+	intronic
CAediting_156225	chr2_10420401_+	intronic
CAediting_156226	chr2_10420405_+	intronic
CAediting_156227	chr2_10420431_+	intronic
CAediting_156228	chr2_10420448_+	intronic
CAediting_156229	chr2_10420464_+	intronic
CAediting_156230	chr2_10420861_+	intronic
CAediting_156231	chr2_10420878_+	intronic
CAediting_156232	chr2_10420961_+	intronic
CAediting_156233	chr2_10420975_+	intronic
CAediting_156234	chr2_10420995_+	intronic
CAediting_156235	chr2_10421010_+	intronic
CAediting_156236	chr2_10421026_+	intronic
CAediting_156237	chr2_10421452_+	intronic
CAediting_156238	chr2_10421505_+	intronic
CAediting_156239	chr2_10421517_+	intronic
CAediting_156240	chr2_10421564_+	intronic
CAediting_156241	chr2_10421580_+	intronic
CAediting_156242	chr2_10421621_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_155985	chr2_10308931_+	SINE	Alu	FLAM_A
CAediting_155986	chr2_10308960_+	SINE	Alu	FLAM_A
CAediting_155987	chr2_10309058_+	SINE	Alu	AluJo
CAediting_155988	chr2_10309161_+	SINE	Alu	AluJo
CAediting_155989	chr2_10309190_+	SINE	Alu	AluJo
CAediting_155990	chr2_10315886_+	SINE	Alu	AluSz
CAediting_155991	chr2_10315919_+	SINE	Alu	AluSz
CAediting_155992	chr2_10320282_+	LTR	ERVL-MaLR	MSTA
CAediting_155993	chr2_10320283_+	LTR	ERVL-MaLR	MSTA
CAediting_155994	chr2_10320300_+	LTR	ERVL-MaLR	MSTA
CAediting_155995	chr2_10320301_+	LTR	ERVL-MaLR	MSTA
CAediting_155996	chr2_10320353_+	LTR	ERVL-MaLR	MSTA
CAediting_155997	chr2_10320379_+	LTR	ERVL-MaLR	MSTA
CAediting_155998	chr2_10320394_+	LTR	ERVL-MaLR	MSTA
CAediting_155999	chr2_10320421_+	LTR	ERVL-MaLR	MSTA
CAediting_156000	chr2_10320493_+	LTR	ERVL-MaLR	MSTA
CAediting_156001	chr2_10320540_+	LTR	ERVL-MaLR	MSTA
CAediting_156002	chr2_10320546_+	LTR	ERVL-MaLR	MSTA
CAediting_156003	chr2_10320554_+	LTR	ERVL-MaLR	MSTA
CAediting_156004	chr2_10320555_+	LTR	ERVL-MaLR	MSTA
CAediting_156005	chr2_10320569_+	LTR	ERVL-MaLR	MSTA
CAediting_156006	chr2_10321002_+	LTR	ERVL-MaLR	MSTA
CAediting_156007	chr2_10321012_+	LTR	ERVL-MaLR	MSTA
CAediting_156008	chr2_10321013_+	LTR	ERVL-MaLR	MSTA
CAediting_156009	chr2_10321038_+	LTR	ERVL-MaLR	MSTA
CAediting_156010	chr2_10321042_+	LTR	ERVL-MaLR	MSTA
CAediting_156011	chr2_10321043_+	LTR	ERVL-MaLR	MSTA
CAediting_156012	chr2_10321046_+	LTR	ERVL-MaLR	MSTA
CAediting_156013	chr2_10321047_+	LTR	ERVL-MaLR	MSTA
CAediting_156014	chr2_10321048_+	LTR	ERVL-MaLR	MSTA
CAediting_156015	chr2_10321056_+	LTR	ERVL-MaLR	MSTA
CAediting_156016	chr2_10321057_+	LTR	ERVL-MaLR	MSTA
CAediting_156017	chr2_10321065_+	LTR	ERVL-MaLR	MSTA
CAediting_156018	chr2_10321132_+	LTR	ERVL-MaLR	MSTA
CAediting_156019	chr2_10321165_+	LTR	ERVL-MaLR	MSTA
CAediting_156020	chr2_10321174_+	LTR	ERVL-MaLR	MSTA
CAediting_156021	chr2_10321222_+	LTR	ERVL-MaLR	MSTA
CAediting_156022	chr2_10321229_+	LTR	ERVL-MaLR	MSTA
CAediting_156023	chr2_10321233_+	LTR	ERVL-MaLR	MSTA
CAediting_156024	chr2_10321236_+	LTR	ERVL-MaLR	MSTA
CAediting_156025	chr2_10321246_+	LTR	ERVL-MaLR	MSTA
CAediting_156026	chr2_10321249_+	LTR	ERVL-MaLR	MSTA
CAediting_156027	chr2_10321360_+	LTR	ERVL-MaLR	MSTA
CAediting_156028	chr2_10322438_+	LINE	L2	L2a
CAediting_156029	chr2_10324952_+	SINE	Alu	AluSz
CAediting_156030	chr2_10334277_+	SINE	Alu	AluJr
CAediting_156031	chr2_10334282_+	SINE	Alu	AluJr
CAediting_156032	chr2_10334301_+	SINE	Alu	AluJr
CAediting_156033	chr2_10334387_+	SINE	Alu	AluJr
CAediting_156034	chr2_10334393_+	SINE	Alu	AluJr
CAediting_156035	chr2_10334401_+	SINE	Alu	AluJr
CAediting_156036	chr2_10334428_+	SINE	Alu	AluJr
CAediting_156037	chr2_10334433_+	SINE	Alu	AluJr
CAediting_156038	chr2_10334453_+	SINE	Alu	AluJr
CAediting_156039	chr2_10334465_+	SINE	Alu	AluJr
CAediting_156040	chr2_10334785_+	SINE	Alu	AluJb
CAediting_156041	chr2_10334786_+	SINE	Alu	AluJb
CAediting_156042	chr2_10334819_+	SINE	Alu	AluJb
CAediting_156043	chr2_10334878_+	SINE	Alu	AluJb
CAediting_156044	chr2_10334879_+	SINE	Alu	AluJb
CAediting_156045	chr2_10334938_+	SINE	Alu	AluJb
CAediting_156046	chr2_10334939_+	SINE	Alu	AluJb
CAediting_156047	chr2_10336845_+	SINE	Alu	AluJr
CAediting_156048	chr2_10336870_+	SINE	Alu	AluJr
CAediting_156049	chr2_10336987_+	SINE	Alu	AluJr
CAediting_156050	chr2_10336988_+	SINE	Alu	AluJr
CAediting_156051	chr2_10337013_+	SINE	Alu	AluJr
CAediting_156052	chr2_10341274_+	SINE	Alu	AluJb
CAediting_156053	chr2_10341289_+	SINE	Alu	AluJb
CAediting_156054	chr2_10341305_+	SINE	Alu	AluJb
CAediting_156055	chr2_10341308_+	SINE	Alu	AluJb
CAediting_156056	chr2_10341309_+	SINE	Alu	AluJb
CAediting_156057	chr2_10341310_+	SINE	Alu	AluJb
CAediting_156058	chr2_10341314_+	SINE	Alu	AluJb
CAediting_156059	chr2_10341366_+	SINE	Alu	AluJb
CAediting_156060	chr2_10341376_+	SINE	Alu	AluJb
CAediting_156061	chr2_10341896_+	SINE	Alu	AluJr
CAediting_156062	chr2_10341916_+	SINE	Alu	AluJr
CAediting_156063	chr2_10341924_+	SINE	Alu	AluJr
CAediting_156064	chr2_10342049_+	SINE	Alu	AluJr
CAediting_156065	chr2_10342109_+	SINE	Alu	AluJr
CAediting_156066	chr2_10345518_+	SINE	Alu	AluJo
CAediting_156067	chr2_10345536_+	SINE	Alu	AluJo
CAediting_156068	chr2_10345537_+	SINE	Alu	AluJo
CAediting_156069	chr2_10345550_+	SINE	Alu	AluJo
CAediting_156070	chr2_10345574_+	SINE	Alu	AluJo
CAediting_156071	chr2_10345596_+	SINE	Alu	AluJo
CAediting_156072	chr2_10345646_+	SINE	Alu	AluJo
CAediting_156073	chr2_10345692_+	SINE	Alu	AluJo
CAediting_156074	chr2_10345709_+	SINE	Alu	AluJo
CAediting_156075	chr2_10345725_+	SINE	Alu	AluJo
CAediting_156076	chr2_10348195_+	SINE	Alu	AluSx
CAediting_156077	chr2_10348291_+	SINE	Alu	AluSx
CAediting_156078	chr2_10348293_+	SINE	Alu	AluSx
CAediting_156079	chr2_10348502_+	SINE	Alu	AluJr
CAediting_156080	chr2_10348509_+	SINE	Alu	AluJr
CAediting_156081	chr2_10348530_+	SINE	Alu	AluJr
CAediting_156082	chr2_10348531_+	SINE	Alu	AluJr
CAediting_156083	chr2_10348582_+	SINE	Alu	AluJr
CAediting_156084	chr2_10348664_+	SINE	Alu	AluJr
CAediting_156085	chr2_10348689_+	SINE	Alu	AluJr
CAediting_156086	chr2_10349446_+	SINE	Alu	AluY
CAediting_156087	chr2_10349516_+	SINE	Alu	AluY
CAediting_156088	chr2_10349518_+	SINE	Alu	AluY
CAediting_156089	chr2_10349524_+	SINE	Alu	AluY
CAediting_156090	chr2_10349525_+	SINE	Alu	AluY
CAediting_156091	chr2_10349526_+	SINE	Alu	AluY
CAediting_156092	chr2_10349537_+	SINE	Alu	AluY
CAediting_156093	chr2_10349541_+	SINE	Alu	AluY
CAediting_156094	chr2_10349542_+	SINE	Alu	AluY
CAediting_156095	chr2_10349544_+	SINE	Alu	AluY
CAediting_156096	chr2_10349546_+	SINE	Alu	AluY
CAediting_156097	chr2_10349548_+	SINE	Alu	AluY
CAediting_156098	chr2_10349551_+	SINE	Alu	AluY
CAediting_156099	chr2_10349552_+	SINE	Alu	AluY
CAediting_156100	chr2_10349556_+	SINE	Alu	AluY
CAediting_156101	chr2_10349588_+	SINE	Alu	AluY
CAediting_156102	chr2_10349592_+	SINE	Alu	AluY
CAediting_156103	chr2_10349605_+	SINE	Alu	AluY
CAediting_156104	chr2_10349609_+	SINE	Alu	AluY
CAediting_156105	chr2_10349612_+	SINE	Alu	AluY
CAediting_156106	chr2_10349624_+	SINE	Alu	AluY
CAediting_156107	chr2_10349644_+	SINE	Alu	AluY
CAediting_156108	chr2_10349658_+	SINE	Alu	AluY
CAediting_156109	chr2_10349691_+	SINE	Alu	AluY
CAediting_156110	chr2_10350410_+	SINE	Alu	AluJo
CAediting_156111	chr2_10350411_+	SINE	Alu	AluJo
CAediting_156112	chr2_10350414_+	SINE	Alu	AluJo
CAediting_156113	chr2_10350415_+	SINE	Alu	AluJo
CAediting_156114	chr2_10350423_+	SINE	Alu	AluJo
CAediting_156115	chr2_10350428_+	SINE	Alu	AluJo
CAediting_156116	chr2_10350453_+	SINE	Alu	AluJo
CAediting_156117	chr2_10350477_+	SINE	Alu	AluJo
CAediting_156118	chr2_10350478_+	SINE	Alu	AluJo
CAediting_156119	chr2_10350486_+	SINE	Alu	AluJo
CAediting_156120	chr2_10350501_+	SINE	Alu	AluJo
CAediting_156121	chr2_10350509_+	SINE	Alu	AluJo
CAediting_156122	chr2_10350512_+	SINE	Alu	AluJo
CAediting_156123	chr2_10350514_+	SINE	Alu	AluJo
CAediting_156124	chr2_10351594_+	SINE	Alu	AluJo
CAediting_156125	chr2_10351612_+	SINE	Alu	AluJo
CAediting_156126	chr2_10351684_+	SINE	Alu	AluJo
CAediting_156127	chr2_10352003_+	SINE	Alu	AluSz6
CAediting_156128	chr2_10352021_+	SINE	Alu	AluSz6
CAediting_156129	chr2_10352044_+	SINE	Alu	AluSz6
CAediting_156130	chr2_10352060_+	SINE	Alu	AluSz6
CAediting_156131	chr2_10352086_+	SINE	Alu	AluSz6
CAediting_156132	chr2_10352091_+	SINE	Alu	AluSz6
CAediting_156133	chr2_10352105_+	SINE	Alu	AluSz6
CAediting_156134	chr2_10352123_+	SINE	Alu	AluSz6
CAediting_156135	chr2_10352132_+	SINE	Alu	AluSz6
CAediting_156136	chr2_10353589_+	SINE	Alu	AluJb
CAediting_156137	chr2_10353635_+	SINE	Alu	AluJb
CAediting_156138	chr2_10353647_+	SINE	Alu	AluJb
CAediting_156139	chr2_10353661_+	SINE	Alu	AluJb
CAediting_156140	chr2_10353667_+	SINE	Alu	AluJb
CAediting_156141	chr2_10353668_+	SINE	Alu	AluJb
CAediting_156142	chr2_10353672_+	SINE	Alu	AluJb
CAediting_156143	chr2_10353698_+	SINE	Alu	AluJb
CAediting_156144	chr2_10353710_+	SINE	Alu	AluJb
CAediting_156145	chr2_10353750_+	SINE	Alu	AluJb
CAediting_156146	chr2_10353765_+	SINE	Alu	AluJb
CAediting_156147	chr2_10353854_+	SINE	Alu	AluJb
CAediting_156148	chr2_10356992_+	SINE	Alu	AluJo
CAediting_156149	chr2_10357033_+	SINE	Alu	AluJo
CAediting_156150	chr2_10360512_+	SINE	Alu	AluSx1
CAediting_156151	chr2_10361747_+	SINE	Alu	AluSx1
CAediting_156152	chr2_10361756_+	SINE	Alu	AluSx1
CAediting_156153	chr2_10361797_+	SINE	Alu	AluSx1
CAediting_156154	chr2_10361820_+	SINE	Alu	AluSx1
CAediting_156155	chr2_10361821_+	SINE	Alu	AluSx1
CAediting_156156	chr2_10361891_+	SINE	Alu	AluSx1
CAediting_156157	chr2_10361897_+	SINE	Alu	AluSx1
CAediting_156158	chr2_10361960_+	SINE	Alu	AluSx1
CAediting_156159	chr2_10363022_+	SINE	Alu	AluJb
CAediting_156160	chr2_10363036_+	SINE	Alu	AluJb
CAediting_156161	chr2_10363041_+	SINE	Alu	AluJb
CAediting_156162	chr2_10363078_+	SINE	Alu	AluJb
CAediting_156163	chr2_10363105_+	SINE	Alu	AluJb
CAediting_156164	chr2_10363108_+	SINE	Alu	AluJb
CAediting_156165	chr2_10367310_+	SINE	Alu	AluJo
CAediting_156166	chr2_10367312_+	SINE	Alu	AluJo
CAediting_156167	chr2_10367356_+	SINE	Alu	AluJo
CAediting_156168	chr2_10367380_+	SINE	Alu	AluJo
CAediting_156169	chr2_10376642_+	SINE	Alu	AluSz
CAediting_156170	chr2_10379094_+	SINE	Alu	AluSz
CAediting_156171	chr2_10383123_+	SINE	Alu	AluJo
CAediting_156172	chr2_10383134_+	SINE	Alu	AluJo
CAediting_156173	chr2_10383135_+	SINE	Alu	AluJo
CAediting_156174	chr2_10383140_+	SINE	Alu	AluJo
CAediting_156175	chr2_10383144_+	SINE	Alu	AluJo
CAediting_156176	chr2_10383190_+	SINE	Alu	AluJo
CAediting_156177	chr2_10383193_+	SINE	Alu	AluJo
CAediting_156178	chr2_10383220_+	SINE	Alu	AluJo
CAediting_156179	chr2_10383222_+	SINE	Alu	AluJo
CAediting_156180	chr2_10383225_+	SINE	Alu	AluJo
CAediting_156181	chr2_10383261_+	SINE	Alu	AluJo
CAediting_156182	chr2_10383265_+	SINE	Alu	AluJo
CAediting_156183	chr2_10383287_+	SINE	Alu	AluJo
CAediting_156184	chr2_10383321_+	SINE	Alu	AluJo
CAediting_156185	chr2_10383332_+	SINE	Alu	AluJo
CAediting_156186	chr2_10383424_+	SINE	Alu	AluSx1
CAediting_156187	chr2_10383427_+	SINE	Alu	AluSx1
CAediting_156188	chr2_10383443_+	SINE	Alu	AluSx1
CAediting_156189	chr2_10383456_+	SINE	Alu	AluSx1
CAediting_156190	chr2_10383457_+	SINE	Alu	AluSx1
CAediting_156191	chr2_10383463_+	SINE	Alu	AluSx1
CAediting_156192	chr2_10383466_+	SINE	Alu	AluSx1
CAediting_156193	chr2_10383467_+	SINE	Alu	AluSx1
CAediting_156194	chr2_10383480_+	SINE	Alu	AluSx1
CAediting_156195	chr2_10383488_+	SINE	Alu	AluSx1
CAediting_156196	chr2_10383489_+	SINE	Alu	AluSx1
CAediting_156197	chr2_10383492_+	SINE	Alu	AluSx1
CAediting_156198	chr2_10383504_+	SINE	Alu	AluSx1
CAediting_156199	chr2_10383524_+	SINE	Alu	AluSx1
CAediting_156200	chr2_10383529_+	SINE	Alu	AluSx1
CAediting_156201	chr2_10383543_+	SINE	Alu	AluSx1
CAediting_156202	chr2_10383610_+	SINE	Alu	AluSx1
CAediting_156203	chr2_10383615_+	SINE	Alu	AluSx1
CAediting_156204	chr2_10383625_+	SINE	Alu	AluSx1
CAediting_156205	chr2_10383640_+	SINE	Alu	AluSx1
CAediting_156206	chr2_10392224_+	SINE	Alu	AluJo
CAediting_156207	chr2_10392231_+	SINE	Alu	AluJo
CAediting_156208	chr2_10393851_+	SINE	Alu	AluJo
CAediting_156209	chr2_10393853_+	SINE	Alu	AluJo
CAediting_156210	chr2_10393876_+	SINE	Alu	AluJo
CAediting_156211	chr2_10393882_+	SINE	Alu	AluJo
CAediting_156212	chr2_10393890_+	SINE	Alu	AluJo
CAediting_156213	chr2_10403622_+	SINE	Alu	AluSx1
CAediting_156214	chr2_10417108_+	SINE	Alu	AluSq2
CAediting_156215	chr2_10417353_+	SINE	Alu	AluSq2
CAediting_156216	chr2_10418159_+	SINE	Alu	AluSz
CAediting_156217	chr2_10418235_+	SINE	Alu	AluSz
CAediting_156218	chr2_10418327_+	SINE	Alu	AluSz
CAediting_156219	chr2_10418938_+	SINE	Alu	AluSq2
CAediting_156220	chr2_10418955_+	SINE	Alu	AluSq2
CAediting_156221	chr2_10419090_+	SINE	Alu	AluSq2
CAediting_156222	chr2_10419131_+	SINE	Alu	AluSq2
CAediting_156223	chr2_10420260_+	SINE	Alu	AluSz6
CAediting_156224	chr2_10420385_+	SINE	Alu	AluSz6
CAediting_156225	chr2_10420401_+	SINE	Alu	AluSz6
CAediting_156226	chr2_10420405_+	SINE	Alu	AluSz6
CAediting_156227	chr2_10420431_+	SINE	Alu	AluSz6
CAediting_156228	chr2_10420448_+	SINE	Alu	AluSz6
CAediting_156229	chr2_10420464_+	SINE	Alu	AluSz6
CAediting_156230	chr2_10420861_+	SINE	Alu	AluSx
CAediting_156231	chr2_10420878_+	SINE	Alu	AluSx
CAediting_156232	chr2_10420961_+	SINE	Alu	AluSx
CAediting_156233	chr2_10420975_+	SINE	Alu	AluSx
CAediting_156234	chr2_10420995_+	SINE	Alu	AluSx
CAediting_156235	chr2_10421010_+	SINE	Alu	AluSx
CAediting_156236	chr2_10421026_+	SINE	Alu	AluSx
CAediting_156237	chr2_10421452_+	SINE	Alu	AluJo
CAediting_156238	chr2_10421505_+	SINE	Alu	AluJo
CAediting_156239	chr2_10421517_+	SINE	Alu	AluJo
CAediting_156240	chr2_10421564_+	SINE	Alu	AluJo
CAediting_156241	chr2_10421580_+	SINE	Alu	AluJo
CAediting_156242	chr2_10421621_+	SINE	Alu	AluJo

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RNA A-to-I editing events in the alternative splicing sites for HPCAL1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000115756.11.HPCAL1.

Correlation between RNA A-to-I editing and PSI for ENSG00000115756.11.HPCAL1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HPCAL1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LAML.CAediting_155993.ENSG00000115756.HPCAL1.png
Soverview

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Protein coding region RNA A-to-I editings for HPCAL1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for HPCAL1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000115756.11	ENST00000419810	hsa-miR-605-3p	10425008	10425014	7mer-m8	10424994	10425015	140	-15.63
CAediting_748296	chr10_51299626_+	ENSG00000115756.11	ENST00000419810	hsa-miR-605-3p	10423660	10423666	7mer-m8	10423647	10423667	158	-26.29
CAediting_688080	chr9_63819626_+	ENSG00000115756.11	ENST00000419810	hsa-miR-4477b	10425564	10425571	8mer-1a	10425550	10425571	145	-13.84
CAediting_580943	chr7_100356700_+	ENSG00000115756.11	ENST00000381765	hsa-miR-6840-3p	10426916	10426922	7mer-m8	10426906	10426923	143	-27.22
CAediting_1054808	chr15_66496985_-	ENSG00000115756.11	ENST00000419810	hsa-miR-4512	10425200	10425207	8mer-1a	10425184	10425207	159	-31
CAediting_1054808	chr15_66496985_-	ENSG00000115756.11	ENST00000419810	hsa-miR-4512	10425397	10425404	8mer-1a	10425379	10425404	144	-25.52
CAediting_86358	chr1_109598906_+	ENSG00000115756.11	ENST00000419810	hsa-miR-197-5p	10424351	10424357	7mer-m8	10424336	10424358	149	-16.69
CAediting_86358	chr1_109598906_+	ENSG00000115756.11	ENST00000419810	hsa-miR-197-5p	10424859	10424864	6mer	10424843	10424865	144	-30.75
CAediting_1399425	chr20_1392958_-	ENSG00000115756.11	ENST00000419810	hsa-miR-6869-5p	10425340	10425346	7mer-m8	10425327	10425347	150	-24.96
CAediting_524911	chr7_5495852_-	ENSG00000115756.11	ENST00000419810	hsa-miR-589-3p	10424161	10424167	7mer-m8	10424145	10424168	141	-11.96
CAediting_573000	chr7_92204081_-	ENSG00000115756.11	ENST00000419810	hsa-miR-1285-5p	10424451	10424457	7mer-m8	10424438	10424458	145	-16.41
CAediting_580943	chr7_100356700_+	ENSG00000115756.11	ENST00000419810	hsa-miR-6840-3p	10426916	10426922	7mer-m8	10426906	10426923	143	-27.22
CAediting_580943	chr7_100356700_+	ENSG00000115756.11	ENST00000622018	hsa-miR-6840-3p	10426916	10426922	7mer-m8	10426906	10426923	143	-27.22
CAediting_580943	chr7_100356700_+	ENSG00000115756.11	ENST00000613496	hsa-miR-6840-3p	10426916	10426922	7mer-m8	10426906	10426923	143	-27.22
CAediting_580943	chr7_100356700_+	ENSG00000115756.11	ENST00000620771	hsa-miR-6840-3p	10426916	10426922	7mer-m8	10426906	10426923	143	-27.22
CAediting_580943	chr7_100356700_+	ENSG00000115756.11	ENST00000422133	hsa-miR-6840-3p	10426916	10426922	7mer-m8	10426906	10426923	143	-27.22
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000381765	hsa-miR-6891-5p	10426974	10426980	7mer-m8	10426963	10426981	157	-24.84
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000419810	hsa-miR-6891-5p	10424945	10424951	7mer-1a	10424934	10424951	140	-24.91
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000419810	hsa-miR-6891-5p	10423663	10423669	7mer-m8	10423651	10423670	156	-27.63
CAediting_1524209	chrX_134546392_-	ENSG00000115756.11	ENST00000419810	hsa-miR-503-5p	10424378	10424383	6mer	10424365	10424384	141	-30.18
CAediting_1524209	chrX_134546392_-	ENSG00000115756.11	ENST00000419810	hsa-miR-503-5p	10424553	10424559	7mer-m8	10424537	10424560	147	-21.25
CAediting_1524209	chrX_134546392_-	ENSG00000115756.11	ENST00000419810	hsa-miR-503-5p	10423550	10423557	8mer-1a	10423538	10423557	151	-24.99
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000419810	hsa-miR-6891-5p	10426974	10426980	7mer-m8	10426963	10426981	157	-24.84
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000622018	hsa-miR-6891-5p	10426974	10426980	7mer-m8	10426963	10426981	157	-24.84
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000613496	hsa-miR-6891-5p	10426974	10426980	7mer-m8	10426963	10426981	157	-24.84
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000620771	hsa-miR-6891-5p	10426974	10426980	7mer-m8	10426963	10426981	157	-24.84
CAediting_468389	chr6_31355314_-	ENSG00000115756.11	ENST00000422133	hsa-miR-6891-5p	10426974	10426980	7mer-m8	10426963	10426981	157	-24.84

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000115756.11	ENST00000419810	hsa-miR-605-3p	10425692	10425698	7mer-m8	10425677	10425699	146	-12.97
CAediting_980496	chr14_31014685_-	ENSG00000115756.11	ENST00000419810	hsa-miR-624-3p	10423557	10423563	7mer-m8	10423545	10423564	145	-11.71
CAediting_580943	chr7_100356700_+	ENSG00000115756.11	ENST00000419810	hsa-miR-6840-3p	10423457	10423463	7mer-m8	10423441	10423464	150	-27.19

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HPCAL1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for HPCAL1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for HPCAL1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for HPCAL1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for HPCAL1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for HPCAL1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
HPCAL1	C0023893	Liver Cirrhosis, Experimental	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene