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Editing gene: HMGB1 (CAeditome ID:3146)

Gene summary for HMGB1

Gene summary

Gene information	Gene symbol	HMGB1
	Gene ID	3146
	Gene name	high mobility group box 1
	Synonyms	HMG-1\|HMG1\|HMG3\|SBP-1
	Cytomap	13q12.3
	Type of gene	protein-coding
	Description	high mobility group protein B1AmphoterinSulfoglucuronyl carbohydrate binding proteinhigh-mobility group (nonhistone chromosomal) protein 1
	Modification date	20210531
	UniProtAcc	P09429
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
HMGB1	GO:0000976	High mobility group protein B1	19158276
HMGB1	GO:0001530	High mobility group protein B1	21660935
HMGB1	GO:0001786	High mobility group protein B1	18768881
HMGB1	GO:0003684	High mobility group protein B1	17803946
HMGB1	GO:0003713	High mobility group protein B1	19223331
HMGB1	GO:0005178	High mobility group protein B1	20826760
HMGB1	GO:0016829	High mobility group protein B1	17803946
HMGB1	GO:0019958	High mobility group protein B1	22370717
HMGB1	GO:0070182	High mobility group protein B1	17803946
HMGB1	GO:0002218	High mobility group protein B1	24971542
HMGB1	GO:0002643	High mobility group protein B1	18631454
HMGB1	GO:0006357	High mobility group protein B1	11748232
HMGB1	GO:0006954	High mobility group protein B1	23146691
HMGB1	GO:0007204	High mobility group protein B1	22370717
HMGB1	GO:0017055	High mobility group protein B1	8006019
HMGB1	GO:0032072	High mobility group protein B1	17803946
HMGB1	GO:0032425	High mobility group protein B1	15014079
HMGB1	GO:0032689	High mobility group protein B1	22473704
HMGB1	GO:0032732	High mobility group protein B1	12765338
HMGB1	GO:0032733	High mobility group protein B1	22473704
HMGB1	GO:0032755	High mobility group protein B1	12765338
HMGB1	GO:0032755	High mobility group protein B1	26961863
HMGB1	GO:0032757	High mobility group protein B1	26961863
HMGB1	GO:0032760	High mobility group protein B1	12765338
HMGB1	GO:0033151	High mobility group protein B1	9166431
HMGB1	GO:0035711	High mobility group protein B1	22473704
HMGB1	GO:0043065	High mobility group protein B1	19800306
HMGB1	GO:0043277	High mobility group protein B1	18768881
HMGB1	GO:0043280	High mobility group protein B1	19800306
HMGB1	GO:0043371	High mobility group protein B1	22473704
HMGB1	GO:0043388	High mobility group protein B1	11748232
HMGB1	GO:0043388	High mobility group protein B1	19223331
HMGB1	GO:0043410	High mobility group protein B1	12765338
HMGB1	GO:0043537	High mobility group protein B1	23148224
HMGB1	GO:0045944	High mobility group protein B1	19223331
HMGB1	GO:0046330	High mobility group protein B1	12765338
HMGB1	GO:0070374	High mobility group protein B1	22370717
HMGB1	GO:0090026	High mobility group protein B1	22370717
HMGB1	GO:0097350	High mobility group protein B1	18768881
HMGB1	GO:2000343	High mobility group protein B1	26961863
HMGB1	GO:2000426	High mobility group protein B1	20826760
HMGB1	GO:0000793	High mobility group protein B1	12925773
HMGB1	GO:0005615	High mobility group protein B1	19841752
HMGB1	GO:0005634	High mobility group protein B1	19223331
HMGB1	GO:0005634	High mobility group protein B1	8339930
HMGB1	GO:0009986	High mobility group protein B1	19841752
HMGB1	GO:0017053	High mobility group protein B1	19158276
HMGB1	GO:0035868	High mobility group protein B1	20826760

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RNA A-to-I events for HMGB1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000189403.13

RNA A-to-I editing events in Cancer.

CAediting_956127(30457051, -), CAediting_956128(30457056, -), CAediting_956129(30457166, -), CAediting_956130(30457170, -), CAediting_956131(30457188, -), CAediting_956132(30457192, -), CAediting_956133(30457216, -), CAediting_956134(30457221, -), CAediting_956135(30457232, -), CAediting_956136(30457245, -), CAediting_956137(30457253, -), CAediting_956138(30457256, -), CAediting_956139(30457261, -), CAediting_956140(30457262, -), CAediting_956141(30457264, -), CAediting_956142(30457268, -), CAediting_956143(30457270, -), CAediting_956144(30457284, -), CAediting_956145(30457288, -), CAediting_956146(30457439, -), CAediting_956147(30457474, -), CAediting_956148(30457483, -), CAediting_956149(30457496, -), CAediting_956150(30457497, -), CAediting_956151(30457499, -), CAediting_956152(30457500, -), CAediting_956153(30457501, -), CAediting_956154(30457538, -), CAediting_956155(30457545, -), CAediting_956156(30458359, -), CAediting_956157(30458365, -), CAediting_956158(30458402, -), CAediting_956159(30458441, -), CAediting_956160(30458451, -), CAediting_956161(30458468, -), CAediting_956162(30458494, -), CAediting_956163(30458498, -), CAediting_956164(30458499, -), CAediting_956165(30458507, -), CAediting_956166(30458508, -), CAediting_956167(30458510, -), CAediting_956168(30458524, -), CAediting_956169(30458525, -), CAediting_956170(30458579, -), CAediting_956171(30458601, -), CAediting_956172(30459587, -), CAediting_956173(30464327, -), CAediting_956174(30471088, -), CAediting_956175(30471103, -), CAediting_956176(30474652, -), CAediting_956177(30474653, -), CAediting_956178(30474660, -), CAediting_956179(30474693, -), CAediting_956180(30475492, -), CAediting_956181(30490510, -), CAediting_956182(30490511, -), CAediting_956183(30490543, -), CAediting_956184(30503093, -), CAediting_956185(30514401, -), CAediting_956186(30518086, -), CAediting_956187(30534681, -), CAediting_956188(30534780, -), CAediting_956189(30534785, -), CAediting_956190(30535645, -), CAediting_956191(30535685, -), CAediting_956192(30536461, -), CAediting_956193(30536514, -), CAediting_956194(30536517, -), CAediting_956195(30536520, -), CAediting_956196(30536523, -), CAediting_956197(30536526, -), CAediting_956198(30536527, -), CAediting_956199(30536577, -), CAediting_956200(30536582, -), CAediting_956201(30536592, -), CAediting_956202(30538932, -), CAediting_956203(30539041, -), CAediting_956204(30539186, -), CAediting_956205(30540709, -), CAediting_956206(30540713, -), CAediting_956207(30541237, -), CAediting_956208(30541251, -), CAediting_956209(30541328, -), CAediting_956210(30545793, -), CAediting_956211(30546567, -), CAediting_956212(30546568, -), CAediting_956213(30546576, -), CAediting_956214(30546681, -), CAediting_956215(30546684, -), CAediting_956216(30546698, -), CAediting_956217(30546703, -), CAediting_956218(30546704, -), CAediting_956219(30549067, -), CAediting_956220(30549105, -), CAediting_956221(30555138, -), CAediting_956222(30555139, -), CAediting_956223(30555174, -), CAediting_956224(30555180, -), CAediting_956225(30555202, -), CAediting_956226(30555206, -), CAediting_956227(30555308, -), CAediting_956228(30555313, -), CAediting_956229(30556160, -), CAediting_956230(30556265, -), CAediting_956231(30556273, -), CAediting_956232(30556283, -), CAediting_956233(30556293, -), CAediting_956234(30556321, -), CAediting_956235(30556322, -), CAediting_956236(30556335, -), CAediting_956237(30556360, -), CAediting_956238(30556373, -), CAediting_956239(30556399, -), CAediting_956240(30563445, -), CAediting_956241(30568250, -), CAediting_956242(30568277, -), CAediting_956243(30568456, -), CAediting_956244(30569053, -), CAediting_956245(30569062, -), CAediting_956246(30569063, -), CAediting_956247(30569092, -), CAediting_956248(30570208, -), CAediting_956249(30570227, -), CAediting_956250(30570287, -), CAediting_956251(30571405, -), CAediting_956252(30573748, -), CAediting_956253(30573749, -), CAediting_956254(30573779, -), CAediting_956255(30573789, -), CAediting_956256(30573896, -), CAediting_956257(30575815, -), CAediting_956258(30575832, -), CAediting_956259(30575833, -), CAediting_956260(30575838, -), CAediting_956261(30575897, -), CAediting_956262(30575903, -), CAediting_956263(30580983, -), CAediting_956264(30583049, -), CAediting_956265(30583146, -), CAediting_956266(30583752, -), CAediting_956267(30583922, -), CAediting_956268(30585595, -), CAediting_956269(30585602, -), CAediting_956270(30585664, -), CAediting_956271(30586178, -), CAediting_956272(30586193, -), CAediting_956273(30586209, -), CAediting_956274(30586580, -), CAediting_956275(30586599, -), CAediting_956276(30586624, -), CAediting_956277(30586625, -), CAediting_956278(30586631, -), CAediting_956279(30586635, -), CAediting_956280(30586651, -), CAediting_956281(30586654, -), CAediting_956282(30586660, -), CAediting_956283(30586665, -), CAediting_956284(30586679, -), CAediting_956285(30586698, -), CAediting_956286(30586701, -), CAediting_956287(30586750, -), CAediting_956288(30587442, -), CAediting_956289(30588808, -), CAediting_956290(30589074, -), CAediting_956291(30590450, -), CAediting_956292(30590451, -), CAediting_956293(30590482, -), CAediting_956294(30591093, -), CAediting_956295(30591098, -), CAediting_956296(30591099, -), CAediting_956297(30591168, -), CAediting_956298(30591169, -), CAediting_956299(30591175, -), CAediting_956300(30591205, -), CAediting_956301(30591583, -), CAediting_956302(30591634, -), CAediting_956303(30591638, -), CAediting_956304(30591674, -), CAediting_956305(30591698, -), CAediting_956306(30597118, -), CAediting_956307(30597156, -), CAediting_956308(30597198, -), CAediting_956309(30597220, -), CAediting_956310(30597221, -), CAediting_956311(30597450, -), CAediting_956312(30597455, -), CAediting_956313(30597478, -), CAediting_956314(30599011, -), CAediting_956315(30599031, -), CAediting_956316(30599538, -), CAediting_956317(30599539, -), CAediting_956318(30599614, -), CAediting_956319(30599711, -), CAediting_956320(30599734, -), CAediting_956321(30599785, -), CAediting_956322(30600641, -), CAediting_956323(30600709, -), CAediting_956324(30603020, -), CAediting_956325(30603049, -), CAediting_956326(30608056, -), CAediting_956327(30609139, -), CAediting_956328(30611224, -), CAediting_956329(30611225, -), CAediting_956330(30614726, -), CAediting_956331(30614782, -), CAediting_956332(30614794, -), CAediting_956333(30614795, -), CAediting_956334(30614815, -), CAediting_956335(30614835, -), CAediting_956336(30614836, -), CAediting_956337(30614837, -),

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RNA editing positional annotations for HMGB1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_956127	chr13_30457051_-	UTR3
CAediting_956128	chr13_30457056_-	UTR3
CAediting_956129	chr13_30457166_-	UTR3
CAediting_956130	chr13_30457170_-	UTR3
CAediting_956131	chr13_30457188_-	UTR3
CAediting_956132	chr13_30457192_-	UTR3
CAediting_956133	chr13_30457216_-	UTR3
CAediting_956134	chr13_30457221_-	UTR3
CAediting_956135	chr13_30457232_-	UTR3
CAediting_956136	chr13_30457245_-	UTR3
CAediting_956137	chr13_30457253_-	UTR3
CAediting_956138	chr13_30457256_-	UTR3
CAediting_956139	chr13_30457261_-	UTR3
CAediting_956140	chr13_30457262_-	UTR3
CAediting_956141	chr13_30457264_-	UTR3
CAediting_956142	chr13_30457268_-	UTR3
CAediting_956143	chr13_30457270_-	UTR3
CAediting_956144	chr13_30457284_-	UTR3
CAediting_956145	chr13_30457288_-	UTR3
CAediting_956146	chr13_30457439_-	UTR3
CAediting_956147	chr13_30457474_-	UTR3
CAediting_956148	chr13_30457483_-	UTR3
CAediting_956149	chr13_30457496_-	UTR3
CAediting_956150	chr13_30457497_-	UTR3
CAediting_956151	chr13_30457499_-	UTR3
CAediting_956152	chr13_30457500_-	UTR3
CAediting_956153	chr13_30457501_-	UTR3
CAediting_956154	chr13_30457538_-	UTR3
CAediting_956155	chr13_30457545_-	UTR3
CAediting_956156	chr13_30458359_-	UTR3
CAediting_956157	chr13_30458365_-	UTR3
CAediting_956158	chr13_30458402_-	UTR3
CAediting_956159	chr13_30458441_-	UTR3
CAediting_956160	chr13_30458451_-	UTR3
CAediting_956161	chr13_30458468_-	UTR3
CAediting_956162	chr13_30458494_-	UTR3
CAediting_956163	chr13_30458498_-	UTR3
CAediting_956164	chr13_30458499_-	UTR3
CAediting_956165	chr13_30458507_-	UTR3
CAediting_956166	chr13_30458508_-	UTR3
CAediting_956167	chr13_30458510_-	UTR3
CAediting_956168	chr13_30458524_-	UTR3
CAediting_956169	chr13_30458525_-	UTR3
CAediting_956170	chr13_30458579_-	UTR3
CAediting_956171	chr13_30458601_-	UTR3
CAediting_956172	chr13_30459587_-	UTR3
CAediting_956173	chr13_30464327_-	ncRNA_intronic
CAediting_956174	chr13_30471088_-	intronic
CAediting_956175	chr13_30471103_-	intronic
CAediting_956176	chr13_30474652_-	intronic
CAediting_956177	chr13_30474653_-	intronic
CAediting_956178	chr13_30474660_-	intronic
CAediting_956179	chr13_30474693_-	intronic
CAediting_956180	chr13_30475492_-	intronic
CAediting_956181	chr13_30490510_-	intronic
CAediting_956182	chr13_30490511_-	intronic
CAediting_956183	chr13_30490543_-	intronic
CAediting_956184	chr13_30503093_-	intronic
CAediting_956185	chr13_30514401_-	intronic
CAediting_956186	chr13_30518086_-	intronic
CAediting_956187	chr13_30534681_-	intronic
CAediting_956188	chr13_30534780_-	intronic
CAediting_956189	chr13_30534785_-	intronic
CAediting_956190	chr13_30535645_-	intronic
CAediting_956191	chr13_30535685_-	intronic
CAediting_956192	chr13_30536461_-	intronic
CAediting_956193	chr13_30536514_-	intronic
CAediting_956194	chr13_30536517_-	intronic
CAediting_956195	chr13_30536520_-	intronic
CAediting_956196	chr13_30536523_-	intronic
CAediting_956197	chr13_30536526_-	intronic
CAediting_956198	chr13_30536527_-	intronic
CAediting_956199	chr13_30536577_-	intronic
CAediting_956200	chr13_30536582_-	intronic
CAediting_956201	chr13_30536592_-	intronic
CAediting_956202	chr13_30538932_-	intronic
CAediting_956203	chr13_30539041_-	intronic
CAediting_956204	chr13_30539186_-	intronic
CAediting_956205	chr13_30540709_-	ncRNA_exonic
CAediting_956206	chr13_30540713_-	ncRNA_exonic
CAediting_956207	chr13_30541237_-	ncRNA_intronic
CAediting_956208	chr13_30541251_-	ncRNA_intronic
CAediting_956209	chr13_30541328_-	ncRNA_intronic
CAediting_956210	chr13_30545793_-	intronic
CAediting_956211	chr13_30546567_-	intronic
CAediting_956212	chr13_30546568_-	intronic
CAediting_956213	chr13_30546576_-	intronic
CAediting_956214	chr13_30546681_-	intronic
CAediting_956215	chr13_30546684_-	intronic
CAediting_956216	chr13_30546698_-	intronic
CAediting_956217	chr13_30546703_-	intronic
CAediting_956218	chr13_30546704_-	intronic
CAediting_956219	chr13_30549067_-	intronic
CAediting_956220	chr13_30549105_-	intronic
CAediting_956221	chr13_30555138_-	intronic
CAediting_956222	chr13_30555139_-	intronic
CAediting_956223	chr13_30555174_-	intronic
CAediting_956224	chr13_30555180_-	intronic
CAediting_956225	chr13_30555202_-	intronic
CAediting_956226	chr13_30555206_-	intronic
CAediting_956227	chr13_30555308_-	intronic
CAediting_956228	chr13_30555313_-	intronic
CAediting_956229	chr13_30556160_-	intronic
CAediting_956230	chr13_30556265_-	intronic
CAediting_956231	chr13_30556273_-	intronic
CAediting_956232	chr13_30556283_-	intronic
CAediting_956233	chr13_30556293_-	intronic
CAediting_956234	chr13_30556321_-	intronic
CAediting_956235	chr13_30556322_-	intronic
CAediting_956236	chr13_30556335_-	intronic
CAediting_956237	chr13_30556360_-	intronic
CAediting_956238	chr13_30556373_-	intronic
CAediting_956239	chr13_30556399_-	intronic
CAediting_956240	chr13_30563445_-	intronic
CAediting_956241	chr13_30568250_-	intronic
CAediting_956242	chr13_30568277_-	intronic
CAediting_956243	chr13_30568456_-	intronic
CAediting_956244	chr13_30569053_-	intronic
CAediting_956245	chr13_30569062_-	intronic
CAediting_956246	chr13_30569063_-	intronic
CAediting_956247	chr13_30569092_-	intronic
CAediting_956248	chr13_30570208_-	intronic
CAediting_956249	chr13_30570227_-	intronic
CAediting_956250	chr13_30570287_-	intronic
CAediting_956251	chr13_30571405_-	intronic
CAediting_956252	chr13_30573748_-	intronic
CAediting_956253	chr13_30573749_-	intronic
CAediting_956254	chr13_30573779_-	intronic
CAediting_956255	chr13_30573789_-	intronic
CAediting_956256	chr13_30573896_-	intronic
CAediting_956257	chr13_30575815_-	intronic
CAediting_956258	chr13_30575832_-	intronic
CAediting_956259	chr13_30575833_-	intronic
CAediting_956260	chr13_30575838_-	intronic
CAediting_956261	chr13_30575897_-	intronic
CAediting_956262	chr13_30575903_-	intronic
CAediting_956263	chr13_30580983_-	intronic
CAediting_956264	chr13_30583049_-	intronic
CAediting_956265	chr13_30583146_-	intronic
CAediting_956266	chr13_30583752_-	intronic
CAediting_956267	chr13_30583922_-	intronic
CAediting_956268	chr13_30585595_-	intronic
CAediting_956269	chr13_30585602_-	intronic
CAediting_956270	chr13_30585664_-	intronic
CAediting_956271	chr13_30586178_-	intronic
CAediting_956272	chr13_30586193_-	intronic
CAediting_956273	chr13_30586209_-	intronic
CAediting_956274	chr13_30586580_-	intronic
CAediting_956275	chr13_30586599_-	intronic
CAediting_956276	chr13_30586624_-	intronic
CAediting_956277	chr13_30586625_-	intronic
CAediting_956278	chr13_30586631_-	intronic
CAediting_956279	chr13_30586635_-	intronic
CAediting_956280	chr13_30586651_-	intronic
CAediting_956281	chr13_30586654_-	intronic
CAediting_956282	chr13_30586660_-	intronic
CAediting_956283	chr13_30586665_-	intronic
CAediting_956284	chr13_30586679_-	intronic
CAediting_956285	chr13_30586698_-	intronic
CAediting_956286	chr13_30586701_-	intronic
CAediting_956287	chr13_30586750_-	intronic
CAediting_956288	chr13_30587442_-	intronic
CAediting_956289	chr13_30588808_-	intronic
CAediting_956290	chr13_30589074_-	intronic
CAediting_956291	chr13_30590450_-	intronic
CAediting_956292	chr13_30590451_-	intronic
CAediting_956293	chr13_30590482_-	intronic
CAediting_956294	chr13_30591093_-	intronic
CAediting_956295	chr13_30591098_-	intronic
CAediting_956296	chr13_30591099_-	intronic
CAediting_956297	chr13_30591168_-	intronic
CAediting_956298	chr13_30591169_-	intronic
CAediting_956299	chr13_30591175_-	intronic
CAediting_956300	chr13_30591205_-	intronic
CAediting_956301	chr13_30591583_-	intronic
CAediting_956302	chr13_30591634_-	intronic
CAediting_956303	chr13_30591638_-	intronic
CAediting_956304	chr13_30591674_-	intronic
CAediting_956305	chr13_30591698_-	intronic
CAediting_956306	chr13_30597118_-	intronic
CAediting_956307	chr13_30597156_-	intronic
CAediting_956308	chr13_30597198_-	intronic
CAediting_956309	chr13_30597220_-	intronic
CAediting_956310	chr13_30597221_-	intronic
CAediting_956311	chr13_30597450_-	intronic
CAediting_956312	chr13_30597455_-	intronic
CAediting_956313	chr13_30597478_-	intronic
CAediting_956314	chr13_30599011_-	intronic
CAediting_956315	chr13_30599031_-	intronic
CAediting_956316	chr13_30599538_-	intronic
CAediting_956317	chr13_30599539_-	intronic
CAediting_956318	chr13_30599614_-	intronic
CAediting_956319	chr13_30599711_-	intronic
CAediting_956320	chr13_30599734_-	intronic
CAediting_956321	chr13_30599785_-	intronic
CAediting_956322	chr13_30600641_-	intronic
CAediting_956323	chr13_30600709_-	intronic
CAediting_956324	chr13_30603020_-	intronic
CAediting_956325	chr13_30603049_-	intronic
CAediting_956326	chr13_30608056_-	intronic
CAediting_956327	chr13_30609139_-	intronic
CAediting_956328	chr13_30611224_-	intronic
CAediting_956329	chr13_30611225_-	intronic
CAediting_956330	chr13_30614726_-	intronic
CAediting_956331	chr13_30614782_-	intronic
CAediting_956332	chr13_30614794_-	intronic
CAediting_956333	chr13_30614795_-	intronic
CAediting_956334	chr13_30614815_-	intronic
CAediting_956335	chr13_30614835_-	intronic
CAediting_956336	chr13_30614836_-	intronic
CAediting_956337	chr13_30614837_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_956129	chr13_30457166_-	SINE	Alu	AluJr
CAediting_956130	chr13_30457170_-	SINE	Alu	AluJr
CAediting_956131	chr13_30457188_-	SINE	Alu	AluJr
CAediting_956132	chr13_30457192_-	SINE	Alu	AluJr
CAediting_956133	chr13_30457216_-	SINE	Alu	AluJr
CAediting_956134	chr13_30457221_-	SINE	Alu	AluJr
CAediting_956135	chr13_30457232_-	SINE	Alu	AluJr
CAediting_956136	chr13_30457245_-	SINE	Alu	AluJr
CAediting_956137	chr13_30457253_-	SINE	Alu	AluJr
CAediting_956138	chr13_30457256_-	SINE	Alu	AluJr
CAediting_956139	chr13_30457261_-	SINE	Alu	AluJr
CAediting_956140	chr13_30457262_-	SINE	Alu	AluJr
CAediting_956141	chr13_30457264_-	SINE	Alu	AluJr
CAediting_956142	chr13_30457268_-	SINE	Alu	AluJr
CAediting_956143	chr13_30457270_-	SINE	Alu	AluJr
CAediting_956144	chr13_30457284_-	SINE	Alu	AluJr
CAediting_956146	chr13_30457439_-	SINE	Alu	FLAM_C
CAediting_956147	chr13_30457474_-	SINE	Alu	FLAM_C
CAediting_956148	chr13_30457483_-	SINE	Alu	FLAM_C
CAediting_956149	chr13_30457496_-	SINE	Alu	FLAM_C
CAediting_956150	chr13_30457497_-	SINE	Alu	FLAM_C
CAediting_956151	chr13_30457499_-	SINE	Alu	FLAM_C
CAediting_956152	chr13_30457500_-	SINE	Alu	FLAM_C
CAediting_956153	chr13_30457501_-	SINE	Alu	FLAM_C
CAediting_956156	chr13_30458359_-	SINE	Alu	AluY
CAediting_956157	chr13_30458365_-	SINE	Alu	AluY
CAediting_956158	chr13_30458402_-	SINE	Alu	AluY
CAediting_956159	chr13_30458441_-	SINE	Alu	AluY
CAediting_956160	chr13_30458451_-	SINE	Alu	AluY
CAediting_956161	chr13_30458468_-	SINE	Alu	AluY
CAediting_956162	chr13_30458494_-	SINE	Alu	AluY
CAediting_956163	chr13_30458498_-	SINE	Alu	AluY
CAediting_956164	chr13_30458499_-	SINE	Alu	AluY
CAediting_956165	chr13_30458507_-	SINE	Alu	AluY
CAediting_956166	chr13_30458508_-	SINE	Alu	AluY
CAediting_956167	chr13_30458510_-	SINE	Alu	AluY
CAediting_956168	chr13_30458524_-	SINE	Alu	AluY
CAediting_956169	chr13_30458525_-	SINE	Alu	AluY
CAediting_956170	chr13_30458579_-	SINE	Alu	AluY
CAediting_956171	chr13_30458601_-	SINE	Alu	AluY
CAediting_956174	chr13_30471088_-	SINE	Alu	AluSx4
CAediting_956175	chr13_30471103_-	SINE	Alu	AluSx4
CAediting_956176	chr13_30474652_-	SINE	Alu	AluJr4
CAediting_956177	chr13_30474653_-	SINE	Alu	AluJr4
CAediting_956178	chr13_30474660_-	SINE	Alu	AluJr4
CAediting_956179	chr13_30474693_-	SINE	Alu	AluJr4
CAediting_956180	chr13_30475492_-	SINE	Alu	AluJb
CAediting_956181	chr13_30490510_-	SINE	Alu	AluSz6
CAediting_956182	chr13_30490511_-	SINE	Alu	AluSz6
CAediting_956183	chr13_30490543_-	SINE	Alu	AluSz6
CAediting_956184	chr13_30503093_-	SINE	Alu	AluY
CAediting_956185	chr13_30514401_-	SINE	Alu	FLAM_A
CAediting_956186	chr13_30518086_-	SINE	Alu	AluJo
CAediting_956187	chr13_30534681_-	SINE	Alu	AluSx
CAediting_956188	chr13_30534780_-	SINE	Alu	AluSx
CAediting_956189	chr13_30534785_-	SINE	Alu	AluSx
CAediting_956190	chr13_30535645_-	SINE	Alu	AluSq2
CAediting_956191	chr13_30535685_-	SINE	Alu	AluSq2
CAediting_956192	chr13_30536461_-	SINE	Alu	AluSx
CAediting_956193	chr13_30536514_-	SINE	Alu	AluSx
CAediting_956194	chr13_30536517_-	SINE	Alu	AluSx
CAediting_956195	chr13_30536520_-	SINE	Alu	AluSx
CAediting_956196	chr13_30536523_-	SINE	Alu	AluSx
CAediting_956197	chr13_30536526_-	SINE	Alu	AluSx
CAediting_956198	chr13_30536527_-	SINE	Alu	AluSx
CAediting_956199	chr13_30536577_-	SINE	Alu	AluSx
CAediting_956200	chr13_30536582_-	SINE	Alu	AluSx
CAediting_956201	chr13_30536592_-	SINE	Alu	AluSx
CAediting_956202	chr13_30538932_-	SINE	Alu	AluSx1
CAediting_956203	chr13_30539041_-	SINE	Alu	AluSx1
CAediting_956204	chr13_30539186_-	SINE	Alu	AluSx1
CAediting_956205	chr13_30540709_-	SINE	Alu	AluSp
CAediting_956206	chr13_30540713_-	SINE	Alu	AluSp
CAediting_956207	chr13_30541237_-	Retroposon	SVA	SVA_E
CAediting_956208	chr13_30541251_-	Retroposon	SVA	SVA_E
CAediting_956209	chr13_30541328_-	SINE	Alu	FLAM_A
CAediting_956210	chr13_30545793_-	SINE	Alu	AluJb
CAediting_956211	chr13_30546567_-	SINE	Alu	AluJr
CAediting_956212	chr13_30546568_-	SINE	Alu	AluJr
CAediting_956213	chr13_30546576_-	SINE	Alu	AluJr
CAediting_956214	chr13_30546681_-	SINE	Alu	AluJr
CAediting_956215	chr13_30546684_-	SINE	Alu	AluJr
CAediting_956216	chr13_30546698_-	SINE	Alu	AluJr
CAediting_956217	chr13_30546703_-	SINE	Alu	AluJr
CAediting_956218	chr13_30546704_-	SINE	Alu	AluJr
CAediting_956219	chr13_30549067_-	SINE	Alu	AluJb
CAediting_956220	chr13_30549105_-	SINE	Alu	AluJb
CAediting_956221	chr13_30555138_-	SINE	Alu	AluY
CAediting_956222	chr13_30555139_-	SINE	Alu	AluY
CAediting_956223	chr13_30555174_-	SINE	Alu	AluY
CAediting_956224	chr13_30555180_-	SINE	Alu	AluY
CAediting_956225	chr13_30555202_-	SINE	Alu	AluY
CAediting_956226	chr13_30555206_-	SINE	Alu	AluY
CAediting_956227	chr13_30555308_-	SINE	Alu	AluY
CAediting_956228	chr13_30555313_-	SINE	Alu	AluY
CAediting_956229	chr13_30556160_-	SINE	Alu	AluSq
CAediting_956230	chr13_30556265_-	SINE	Alu	AluSq
CAediting_956231	chr13_30556273_-	SINE	Alu	AluSq
CAediting_956232	chr13_30556283_-	SINE	Alu	AluSq
CAediting_956233	chr13_30556293_-	SINE	Alu	AluSq
CAediting_956234	chr13_30556321_-	SINE	Alu	AluSq
CAediting_956235	chr13_30556322_-	SINE	Alu	AluSq
CAediting_956236	chr13_30556335_-	SINE	Alu	AluSq
CAediting_956237	chr13_30556360_-	SINE	Alu	AluSq
CAediting_956238	chr13_30556373_-	SINE	Alu	AluSq
CAediting_956239	chr13_30556399_-	SINE	Alu	AluSq
CAediting_956240	chr13_30563445_-	SINE	Alu	AluJr
CAediting_956241	chr13_30568250_-	SINE	Alu	AluJo
CAediting_956242	chr13_30568277_-	SINE	Alu	AluJo
CAediting_956243	chr13_30568456_-	SINE	Alu	AluJo
CAediting_956244	chr13_30569053_-	SINE	Alu	AluSz
CAediting_956245	chr13_30569062_-	SINE	Alu	AluSz
CAediting_956246	chr13_30569063_-	SINE	Alu	AluSz
CAediting_956247	chr13_30569092_-	SINE	Alu	AluSz
CAediting_956248	chr13_30570208_-	SINE	Alu	AluSx
CAediting_956249	chr13_30570227_-	SINE	Alu	AluSx
CAediting_956250	chr13_30570287_-	SINE	Alu	AluSx
CAediting_956251	chr13_30571405_-	SINE	Alu	AluSx3
CAediting_956252	chr13_30573748_-	SINE	Alu	AluJb
CAediting_956253	chr13_30573749_-	SINE	Alu	AluJb
CAediting_956254	chr13_30573779_-	SINE	Alu	AluJb
CAediting_956255	chr13_30573789_-	SINE	Alu	AluJb
CAediting_956256	chr13_30573896_-	SINE	Alu	AluJb
CAediting_956257	chr13_30575815_-	SINE	Alu	AluJo
CAediting_956258	chr13_30575832_-	SINE	Alu	AluJo
CAediting_956259	chr13_30575833_-	SINE	Alu	AluJo
CAediting_956260	chr13_30575838_-	SINE	Alu	AluJo
CAediting_956261	chr13_30575897_-	SINE	Alu	AluJo
CAediting_956262	chr13_30575903_-	SINE	Alu	AluJo
CAediting_956263	chr13_30580983_-	SINE	Alu	AluJb
CAediting_956264	chr13_30583049_-	SINE	Alu	AluJb
CAediting_956265	chr13_30583146_-	SINE	Alu	AluJb
CAediting_956266	chr13_30583752_-	SINE	Alu	AluSc
CAediting_956267	chr13_30583922_-	SINE	Alu	AluJo
CAediting_956268	chr13_30585595_-	SINE	Alu	AluSz
CAediting_956269	chr13_30585602_-	SINE	Alu	AluSz
CAediting_956270	chr13_30585664_-	SINE	Alu	AluSz
CAediting_956271	chr13_30586178_-	SINE	Alu	AluJb
CAediting_956272	chr13_30586193_-	SINE	Alu	AluJb
CAediting_956273	chr13_30586209_-	SINE	Alu	AluJb
CAediting_956274	chr13_30586580_-	SINE	Alu	AluSx
CAediting_956275	chr13_30586599_-	SINE	Alu	AluSx
CAediting_956276	chr13_30586624_-	SINE	Alu	AluSx
CAediting_956277	chr13_30586625_-	SINE	Alu	AluSx
CAediting_956278	chr13_30586631_-	SINE	Alu	AluSx
CAediting_956279	chr13_30586635_-	SINE	Alu	AluSx
CAediting_956280	chr13_30586651_-	SINE	Alu	AluSx
CAediting_956281	chr13_30586654_-	SINE	Alu	AluSx
CAediting_956282	chr13_30586660_-	SINE	Alu	AluSx
CAediting_956283	chr13_30586665_-	SINE	Alu	AluSx
CAediting_956284	chr13_30586679_-	SINE	Alu	AluSx
CAediting_956285	chr13_30586698_-	SINE	Alu	AluSx
CAediting_956286	chr13_30586701_-	SINE	Alu	AluSx
CAediting_956287	chr13_30586750_-	SINE	Alu	AluSx
CAediting_956288	chr13_30587442_-	SINE	Alu	FAM
CAediting_956289	chr13_30588808_-	SINE	Alu	AluSz
CAediting_956290	chr13_30589074_-	SINE	Alu	AluSp
CAediting_956291	chr13_30590450_-	SINE	Alu	AluJb
CAediting_956292	chr13_30590451_-	SINE	Alu	AluJb
CAediting_956293	chr13_30590482_-	SINE	Alu	AluJb
CAediting_956294	chr13_30591093_-	SINE	Alu	AluSz
CAediting_956295	chr13_30591098_-	SINE	Alu	AluSz
CAediting_956296	chr13_30591099_-	SINE	Alu	AluSz
CAediting_956297	chr13_30591168_-	SINE	Alu	AluSz
CAediting_956298	chr13_30591169_-	SINE	Alu	AluSz
CAediting_956299	chr13_30591175_-	SINE	Alu	AluSz
CAediting_956300	chr13_30591205_-	SINE	Alu	AluSz
CAediting_956301	chr13_30591583_-	SINE	Alu	AluJb
CAediting_956302	chr13_30591634_-	SINE	Alu	AluJb
CAediting_956303	chr13_30591638_-	SINE	Alu	AluJb
CAediting_956304	chr13_30591674_-	SINE	Alu	AluJb
CAediting_956305	chr13_30591698_-	SINE	Alu	AluJb
CAediting_956306	chr13_30597118_-	LTR	ERVL-MaLR	MLT1C
CAediting_956307	chr13_30597156_-	LTR	ERVL-MaLR	MLT1C
CAediting_956308	chr13_30597198_-	LTR	ERVL-MaLR	MLT1C
CAediting_956309	chr13_30597220_-	LTR	ERVL-MaLR	MLT1C
CAediting_956310	chr13_30597221_-	LTR	ERVL-MaLR	MLT1C
CAediting_956311	chr13_30597450_-	LTR	ERVL-MaLR	MLT1C
CAediting_956312	chr13_30597455_-	LTR	ERVL-MaLR	MLT1C
CAediting_956313	chr13_30597478_-	LTR	ERVL-MaLR	MLT1C
CAediting_956314	chr13_30599011_-	SINE	Alu	FLAM_C
CAediting_956315	chr13_30599031_-	SINE	Alu	FLAM_C
CAediting_956316	chr13_30599538_-	LTR	ERVL-MaLR	MLT1B
CAediting_956317	chr13_30599539_-	LTR	ERVL-MaLR	MLT1B
CAediting_956318	chr13_30599614_-	LTR	ERVL-MaLR	MLT1B
CAediting_956319	chr13_30599711_-	LTR	ERVL-MaLR	MLT1B
CAediting_956320	chr13_30599734_-	LTR	ERVL-MaLR	MLT1B
CAediting_956321	chr13_30599785_-	LTR	ERVL-MaLR	MLT1B
CAediting_956322	chr13_30600641_-	SINE	Alu	AluSq2
CAediting_956323	chr13_30600709_-	SINE	Alu	AluSq2
CAediting_956324	chr13_30603020_-	SINE	Alu	AluJb
CAediting_956325	chr13_30603049_-	SINE	Alu	AluJb
CAediting_956326	chr13_30608056_-	LTR	ERVL-MaLR	MLT1F
CAediting_956327	chr13_30609139_-	SINE	Alu	AluY
CAediting_956328	chr13_30611224_-	SINE	Alu	AluSx3
CAediting_956329	chr13_30611225_-	SINE	Alu	AluSx3
CAediting_956330	chr13_30614726_-	SINE	Alu	AluSg4
CAediting_956331	chr13_30614782_-	SINE	Alu	AluSg4
CAediting_956332	chr13_30614794_-	SINE	Alu	AluSg4
CAediting_956333	chr13_30614795_-	SINE	Alu	AluSg4
CAediting_956334	chr13_30614815_-	SINE	Alu	AluSg4
CAediting_956335	chr13_30614835_-	SINE	Alu	AluSg4
CAediting_956336	chr13_30614836_-	SINE	Alu	AluSg4
CAediting_956337	chr13_30614837_-	SINE	Alu	AluSg4

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RNA A-to-I editing events in the alternative splicing sites for HMGB1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000189403.13.HMGB1.

Correlation between RNA A-to-I editing and PSI for ENSG00000189403.13.HMGB1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for HMGB1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

THYM.CAediting_956148.ENSG00000189403.HMGB1.png
Soverview

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Protein coding region RNA A-to-I editings for HMGB1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for HMGB1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-518a-3p	30457249	30457255	7mer-m8	30457248	30457269	145.00	-11.72
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-518a-3p	30457249	30457255	7mer-m8	30457248	30457269	145.00	-11.72
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-518b	30457249	30457255	7mer-m8	30457248	30457269	148.00	-17.23
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-518c-3p	30457249	30457255	7mer-m8	30457248	30457270	153.00	-21.06
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-518d-3p	30457249	30457255	7mer-m8	30457248	30457268	145.00	-16.81
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-518e-3p	30457250	30457256	7mer-m8	30457249	30457269	143.00	-14.50
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-518f-3p	30457249	30457255	7mer-m8	30457248	30457268	145.00	-13.71
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-526a-3p	30457249	30457255	7mer-m8	30457248	30457269	148.00	-12.73
CAediting_956138	chr13_30457256_-	ENSG00000189403.13	ENST00000341423	hsa-miR-371a-3p	30457251	30457257	7mer-m8	30457250	30457270	154.00	-20.42
CAediting_956139	chr13_30457261_-	ENSG00000189403.13	ENST00000341423	hsa-miR-10525-3p	30457259	30457264	6mer	30457258	30457279	144.00	-16.05
CAediting_956141	chr13_30457264_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6513-3p	30457264	30457270	7mer-m8	30457263	30457286	154.00	-18.57
CAediting_956145	chr13_30457288_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3176	30457283	30457289	7mer-m8	30457282	30457301	147.00	-18.07
CAediting_956145	chr13_30457288_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3922-3p	30457283	30457289	7mer-m8	30457282	30457303	164.00	-23.83
CAediting_956145	chr13_30457288_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4297	30457286	30457292	7mer-m8	30457285	30457302	144.00	-15.81
CAediting_956145	chr13_30457288_-	ENSG00000189403.13	ENST00000341423	hsa-miR-5581-5p	30457286	30457292	7mer-m8	30457285	30457306	145.00	-15.12
CAediting_956147	chr13_30457474_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4251	30457474	30457480	7mer-m8	30457473	30457490	146.00	-19.51
CAediting_956147	chr13_30457474_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4324	30457473	30457479	7mer-m8	30457472	30457491	146.00	-11.45
CAediting_956152	chr13_30457500_-	ENSG00000189403.13	ENST00000341423	hsa-miR-1231	30457496	30457502	7mer-1a	30457496	30457515	145.00	-20.93
CAediting_956152	chr13_30457500_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4303	30457499	30457505	7mer-m8	30457498	30457514	147.00	-13.53
CAediting_956128	chr13_30457056_-	ENSG00000189403.13	ENST00000341423	hsa-miR-15b-3p	30457051	30457058	8mer-1a	30457051	30457072	140.00	-7.03
CAediting_956128	chr13_30457056_-	ENSG00000189403.13	ENST00000341423	hsa-miR-96-3p	30457054	30457060	7mer-m8	30457053	30457076	150.00	-11.87
CAediting_956129	chr13_30457166_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3682-5p	30457163	30457170	8mer-1a	30457163	30457184	145.00	-8.27
CAediting_956129	chr13_30457166_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4699-3p	30457160	30457167	8mer-1a	30457160	30457182	142.00	-6.46
CAediting_956130	chr13_30457170_-	ENSG00000189403.13	ENST00000341423	hsa-miR-936	30457170	30457176	7mer-m8	30457169	30457189	154.00	-21.04
CAediting_956131	chr13_30457188_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4716-5p	30457187	30457193	7mer-m8	30457186	30457207	148.00	-13.36
CAediting_956131	chr13_30457188_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30457183	30457189	7mer-m8	30457182	30457203	145.00	-22.16
CAediting_956131	chr13_30457188_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30457183	30457189	7mer-m8	30457182	30457203	145.00	-22.16
CAediting_956131	chr13_30457188_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30457183	30457189	7mer-m8	30457182	30457203	145.00	-22.16
CAediting_956131	chr13_30457188_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30457183	30457189	7mer-m8	30457182	30457203	145.00	-22.16
CAediting_956131	chr13_30457188_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511b-3p	30457183	30457189	7mer-m8	30457182	30457204	140.00	-20.83
CAediting_956131	chr13_30457188_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511b-3p	30457183	30457189	7mer-m8	30457182	30457204	140.00	-20.83
CAediting_956134	chr13_30457221_-	ENSG00000189403.13	ENST00000341423	hsa-miR-328-3p	30457216	30457221	6mer	30457215	30457236	140.00	-27.93
CAediting_956134	chr13_30457221_-	ENSG00000189403.13	ENST00000341423	hsa-miR-5699-5p	30457218	30457224	7mer-m8	30457217	30457238	140.00	-14.89
CAediting_956134	chr13_30457221_-	ENSG00000189403.13	ENST00000341423	hsa-miR-874-5p	30457216	30457223	8mer-1a	30457216	30457238	142.00	-19.25
CAediting_956136	chr13_30457245_-	ENSG00000189403.13	ENST00000341423	hsa-miR-10392-3p	30457239	30457246	8mer-1a	30457239	30457263	144.00	-22.69
CAediting_956136	chr13_30457245_-	ENSG00000189403.13	ENST00000341423	hsa-miR-361-3p	30457244	30457249	6mer	30457243	30457269	142.00	-22.50
CAediting_956149	chr13_30457496_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3169	30457492	30457498	7mer-m8	30457491	30457511	160.00	-17.07
CAediting_956149	chr13_30457496_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4676-3p	30457495	30457501	7mer-m8	30457494	30457515	149.00	-8.75
CAediting_956149	chr13_30457496_-	ENSG00000189403.13	ENST00000341423	hsa-miR-892c-3p	30457495	30457501	7mer-m8	30457494	30457515	140.00	-12.05
CAediting_956150	chr13_30457497_-	ENSG00000189403.13	ENST00000341423	hsa-miR-5707	30457496	30457503	8mer-1a	30457496	30457517	140.00	-11.50
CAediting_956153	chr13_30457501_-	ENSG00000189403.13	ENST00000341423	hsa-miR-375-3p	30457496	30457502	7mer-m8	30457495	30457516	147.00	-13.09
CAediting_956156	chr13_30458359_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6838-3p	30458355	30458361	7mer-m8	30458354	30458372	168.00	-24.31
CAediting_956158	chr13_30458402_-	ENSG00000189403.13	ENST00000341423	hsa-miR-324-3p	30458402	30458408	7mer-m8	30458401	30458423	145.00	-24.59
CAediting_956158	chr13_30458402_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6075	30458397	30458404	8mer-1a	30458397	30458418	150.00	-25.04
CAediting_956161	chr13_30458468_-	ENSG00000189403.13	ENST00000341423	hsa-miR-140-3p	30458466	30458472	7mer-m8	30458465	30458488	161.00	-28.90
CAediting_956166	chr13_30458508_-	ENSG00000189403.13	ENST00000341423	hsa-miR-630	30458502	30458509	8mer-1a	30458502	30458522	151.00	-13.49
CAediting_956167	chr13_30458510_-	ENSG00000189403.13	ENST00000341423	hsa-miR-222-5p	30458508	30458515	8mer-1a	30458508	30458529	140.00	-11.22
CAediting_956167	chr13_30458510_-	ENSG00000189403.13	ENST00000341423	hsa-miR-30a-3p	30458506	30458513	8mer-1a	30458506	30458526	145.00	-10.28
CAediting_956167	chr13_30458510_-	ENSG00000189403.13	ENST00000341423	hsa-miR-30d-3p	30458506	30458513	8mer-1a	30458506	30458526	150.00	-9.30
CAediting_956167	chr13_30458510_-	ENSG00000189403.13	ENST00000341423	hsa-miR-30e-3p	30458506	30458513	8mer-1a	30458506	30458526	145.00	-10.38
CAediting_956168	chr13_30458524_-	ENSG00000189403.13	ENST00000341423	hsa-miR-412-3p	30458524	30458530	7mer-m8	30458523	30458545	151.00	-19.02
CAediting_956168	chr13_30458524_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4508	30458519	30458525	7mer-m8	30458518	30458535	142.00	-28.26
CAediting_956168	chr13_30458524_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6754-3p	30458524	30458530	7mer-m8	30458523	30458543	150.00	-16.46
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-1229-3p	30458524	30458530	7mer-m8	30458523	30458545	150.00	-18.69
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30458524	30458531	8mer-1a	30458524	30458542	142.00	-15.59
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30458524	30458531	8mer-1a	30458524	30458542	142.00	-15.59
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30458524	30458531	8mer-1a	30458524	30458542	142.00	-15.59
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511a-3p	30458524	30458531	8mer-1a	30458524	30458542	142.00	-15.59
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511b-3p	30458524	30458531	8mer-1a	30458524	30458546	145.00	-17.43
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6511b-3p	30458524	30458531	8mer-1a	30458524	30458546	145.00	-17.43
CAediting_956170	chr13_30458579_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3176	30458579	30458585	7mer-m8	30458578	30458596	140.00	-15.24
CAediting_956170	chr13_30458579_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3922-3p	30458579	30458585	7mer-m8	30458578	30458599	141.00	-19.73
CAediting_956171	chr13_30458601_-	ENSG00000189403.13	ENST00000341423	hsa-miR-8052	30458596	30458602	7mer-1a	30458596	30458614	140.00	-24.15
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-125a-5p	30458451	30458457	7mer-m8	30458450	30458473	142.00	-17.66
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-125b-5p	30458451	30458457	7mer-m8	30458450	30458471	141.00	-16.52
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-125b-5p	30458451	30458457	7mer-m8	30458450	30458471	141.00	-16.52
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3943	30458447	30458453	7mer-m8	30458446	30458467	163.00	-23.02
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4313	30458448	30458454	7mer-m8	30458447	30458466	146.00	-21.10
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4319	30458451	30458457	7mer-m8	30458450	30458466	140.00	-16.15
CAediting_956162	chr13_30458494_-	ENSG00000189403.13	ENST00000341423	hsa-miR-548s	30458489	30458496	8mer-1a	30458489	30458511	140.00	-10.98
CAediting_956164	chr13_30458499_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6844	30458497	30458504	8mer-1a	30458497	30458518	155.00	-9.08

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_956171	chr13_30458601_-	ENSG00000189403.13	ENST00000341423	hsa-miR-10399-5p	30458600	30458606	7mer-m8	30458599	30458620	144	-10.39
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-106b-5p	30457249	30457255	7mer-m8	30457248	30457268	155	-14.49
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-1200	30458451	30458457	7mer-m8	30458450	30458471	149	-19.32
CAediting_956144	chr13_30457284_-	ENSG00000189403.13	ENST00000341423	hsa-miR-1271-3p	30457278	30457285	8mer-1a	30457278	30457300	147	-17.62
CAediting_956136	chr13_30457245_-	ENSG00000189403.13	ENST00000341423	hsa-miR-150-5p	30457244	30457250	7mer-m8	30457243	30457264	140	-15.8
CAediting_956127	chr13_30457051_-	ENSG00000189403.13	ENST00000341423	hsa-miR-183-3p	30457051	30457057	7mer-m8	30457050	30457071	140	-9.39
CAediting_956128	chr13_30457056_-	ENSG00000189403.13	ENST00000341423	hsa-miR-183-3p	30457051	30457057	7mer-m8	30457050	30457071	140	-9.39
CAediting_956168	chr13_30458524_-	ENSG00000189403.13	ENST00000341423	hsa-miR-193b-5p	30458520	30458526	7mer-m8	30458519	30458540	142	-19.28
CAediting_956169	chr13_30458525_-	ENSG00000189403.13	ENST00000341423	hsa-miR-193b-5p	30458520	30458526	7mer-m8	30458519	30458540	142	-19.28
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-302a-3p	30457250	30457256	7mer-m8	30457249	30457270	147	-13.01
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-302b-3p	30457250	30457256	7mer-m8	30457249	30457270	151	-10.04
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-302c-3p	30457250	30457256	7mer-m8	30457249	30457270	151	-13.15
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-302d-3p	30457250	30457256	7mer-m8	30457249	30457270	155	-16.34
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-302e	30457250	30457256	7mer-m8	30457249	30457265	141	-8.62
CAediting_956127	chr13_30457051_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3136-5p	30457047	30457053	7mer-m8	30457046	30457068	154	-12.94
CAediting_956133	chr13_30457216_-	ENSG00000189403.13	ENST00000341423	hsa-miR-3176	30457215	30457221	7mer-m8	30457214	30457232	140	-16.05
CAediting_956130	chr13_30457170_-	ENSG00000189403.13	ENST00000341423	hsa-miR-325	30457168	30457175	8mer-1a	30457168	30457194	151	-15.97
CAediting_956155	chr13_30457545_-	ENSG00000189403.13	ENST00000341423	hsa-miR-380-3p	30457541	30457548	8mer-1a	30457541	30457562	142	-9.03
CAediting_956158	chr13_30458402_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4284	30458399	30458405	7mer-m8	30458398	30458415	151	-17.62
CAediting_956156	chr13_30458359_-	ENSG00000189403.13	ENST00000341423	hsa-miR-431-5p	30458356	30458362	7mer-m8	30458355	30458373	147	-17.87
CAediting_956127	chr13_30457051_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4439	30457047	30457053	7mer-m8	30457046	30457067	140	-14.58
CAediting_956149	chr13_30457496_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4445-5p	30457494	30457500	7mer-m8	30457493	30457514	145	-7.23
CAediting_956150	chr13_30457497_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4445-5p	30457494	30457500	7mer-m8	30457493	30457514	145	-7.23
CAediting_956151	chr13_30457499_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4445-5p	30457494	30457500	7mer-m8	30457493	30457514	145	-7.23
CAediting_956148	chr13_30457483_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4649-3p	30457482	30457488	7mer-m8	30457481	30457501	140	-13.7
CAediting_956127	chr13_30457051_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4680-3p	30457050	30457056	7mer-m8	30457049	30457069	152	-10.7
CAediting_956162	chr13_30458494_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4735-5p	30458493	30458499	7mer-m8	30458492	30458513	140	-4.28
CAediting_956163	chr13_30458498_-	ENSG00000189403.13	ENST00000341423	hsa-miR-4735-5p	30458493	30458499	7mer-m8	30458492	30458513	140	-4.28
CAediting_956171	chr13_30458601_-	ENSG00000189403.13	ENST00000341423	hsa-miR-5089-5p	30458596	30458602	7mer-m8	30458595	30458617	148	-14.13
CAediting_956138	chr13_30457256_-	ENSG00000189403.13	ENST00000341423	hsa-miR-5089-5p	30457256	30457262	7mer-m8	30457255	30457274	149	-14.93
CAediting_956139	chr13_30457261_-	ENSG00000189403.13	ENST00000341423	hsa-miR-5089-5p	30457256	30457262	7mer-m8	30457255	30457274	149	-14.93
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-512-3p	30457251	30457257	7mer-m8	30457250	30457274	151	-16.23
CAediting_956138	chr13_30457256_-	ENSG00000189403.13	ENST00000341423	hsa-miR-512-3p	30457251	30457257	7mer-m8	30457250	30457274	151	-16.23
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-512-3p	30457251	30457257	7mer-m8	30457250	30457274	151	-16.23
CAediting_956138	chr13_30457256_-	ENSG00000189403.13	ENST00000341423	hsa-miR-512-3p	30457251	30457257	7mer-m8	30457250	30457274	151	-16.23
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-519d-3p	30457249	30457255	7mer-m8	30457248	30457268	142	-12.95
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-520a-3p	30457250	30457256	7mer-m8	30457249	30457270	140	-10.47
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-520b-3p	30457250	30457256	7mer-m8	30457249	30457269	143	-12.25
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-520c-3p	30457250	30457256	7mer-m8	30457249	30457270	143	-12.25
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-520d-3p	30457250	30457256	7mer-m8	30457249	30457272	141	-12.98
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-520e-3p	30457250	30457256	7mer-m8	30457249	30457269	151	-12.67
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-520h	30457248	30457254	7mer-m8	30457247	30457268	150	-14.17
CAediting_956137	chr13_30457253_-	ENSG00000189403.13	ENST00000341423	hsa-miR-526b-3p	30457249	30457255	7mer-m8	30457248	30457269	148	-11.22
CAediting_956144	chr13_30457284_-	ENSG00000189403.13	ENST00000341423	hsa-miR-550a-3-5p	30457278	30457285	8mer-1a	30457278	30457297	140	-12.5
CAediting_956144	chr13_30457284_-	ENSG00000189403.13	ENST00000341423	hsa-miR-550a-5p	30457278	30457285	8mer-1a	30457278	30457300	140	-16.78
CAediting_956144	chr13_30457284_-	ENSG00000189403.13	ENST00000341423	hsa-miR-550a-5p	30457278	30457285	8mer-1a	30457278	30457300	140	-16.78
CAediting_956157	chr13_30458365_-	ENSG00000189403.13	ENST00000341423	hsa-miR-5691	30458359	30458366	8mer-1a	30458359	30458379	147	-19.02
CAediting_956142	chr13_30457268_-	ENSG00000189403.13	ENST00000341423	hsa-miR-595	30457264	30457271	8mer-1a	30457264	30457286	154	-21.33
CAediting_956143	chr13_30457270_-	ENSG00000189403.13	ENST00000341423	hsa-miR-595	30457264	30457271	8mer-1a	30457264	30457286	154	-21.33
CAediting_956171	chr13_30458601_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6504-3p	30458600	30458606	7mer-m8	30458599	30458620	152	-15.11
CAediting_956138	chr13_30457256_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6506-5p	30457255	30457261	7mer-m8	30457254	30457277	146	-14.44
CAediting_956144	chr13_30457284_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6514-3p	30457280	30457285	6mer	30457279	30457299	141	-19.23
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-660-3p	30458449	30458455	7mer-m8	30458448	30458469	154	-23.26
CAediting_956159	chr13_30458441_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6747-3p	30458438	30458445	8mer-1a	30458438	30458460	149	-23.42
CAediting_956135	chr13_30457232_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6749-3p	30457229	30457235	7mer-m8	30457228	30457247	154	-26
CAediting_956157	chr13_30458365_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6773-3p	30458363	30458370	8mer-1a	30458363	30458384	142	-15.63
CAediting_956136	chr13_30457245_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6778-3p	30457242	30457248	7mer-m8	30457241	30457261	143	-13.97
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6791-3p	30458448	30458454	7mer-m8	30458447	30458467	154	-18.51
CAediting_956157	chr13_30458365_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6805-3p	30458359	30458366	8mer-1a	30458359	30458381	154	-21.46
CAediting_956143	chr13_30457270_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6807-5p	30457270	30457276	7mer-m8	30457269	30457291	152	-24.83
CAediting_956160	chr13_30458451_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6829-3p	30458448	30458454	7mer-m8	30458447	30458466	147	-14.62
CAediting_956133	chr13_30457216_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6878-3p	30457216	30457222	7mer-m8	30457215	30457237	150	-28.27
CAediting_956134	chr13_30457221_-	ENSG00000189403.13	ENST00000341423	hsa-miR-6878-3p	30457216	30457222	7mer-m8	30457215	30457237	150	-28.27
CAediting_956161	chr13_30458468_-	ENSG00000189403.13	ENST00000341423	hsa-miR-7151-3p	30458468	30458474	7mer-m8	30458467	30458487	140	-19.03
CAediting_956154	chr13_30457538_-	ENSG00000189403.13	ENST00000341423	hsa-miR-7159-3p	30457538	30457544	7mer-m8	30457537	30457555	150	-9.37
CAediting_956132	chr13_30457192_-	ENSG00000189403.13	ENST00000341423	hsa-miR-744-3p	30457190	30457196	7mer-m8	30457189	30457213	149	-13.82

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000189403.13	ENST00000341423	hsa-miR-195-3p	30459660	30459666	7mer-m8	30459659	30459681	144	-10.46
CAediting_442554	chr5_154685830_+	ENSG00000189403.13	ENST00000341423	hsa-miR-1303	30457509	30457516	8mer-1a	30457509	30457529	148	-18.26
CAediting_524911	chr7_5495852_-	ENSG00000189403.13	ENST00000341423	hsa-miR-589-3p	30457769	30457775	7mer-m8	30457768	30457792	142	-16.42
CAediting_1160181	chr17_7017644_-	ENSG00000189403.13	ENST00000405805	hsa-miR-195-3p	30459660	30459666	7mer-m8	30459659	30459681	144	-10.46

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000189403.13	ENST00000341423	hsa-miR-200b-3p	30460021	30460027	7mer-m8	30460020	30460041	147	-8.87
CAediting_1229414	chr17_67471546_+	ENSG00000189403.13	ENST00000341423	hsa-miR-548aa	30460053	30460059	7mer-m8	30460052	30460076	155	-15.23
CAediting_1229415	chr17_67471547_+	ENSG00000189403.13	ENST00000341423	hsa-miR-548aa	30460053	30460059	7mer-m8	30460052	30460076	155	-15.23
CAediting_1229414	chr17_67471546_+	ENSG00000189403.13	ENST00000341423	hsa-miR-548aa	30458310	30458316	7mer-m8	30458309	30458334	147	-13.53
CAediting_1229415	chr17_67471547_+	ENSG00000189403.13	ENST00000341423	hsa-miR-548aa	30458310	30458316	7mer-m8	30458309	30458334	147	-13.53
CAediting_228905	chr2_188297554_+	ENSG00000189403.13	ENST00000341423	hsa-miR-561-3p	30460173	30460179	7mer-m8	30460172	30460193	145	-8.14
CAediting_524911	chr7_5495852_-	ENSG00000189403.13	ENST00000341423	hsa-miR-589-3p	30460995	30461001	7mer-m8	30460994	30461017	147	-12.05
CAediting_980496	chr14_31014685_-	ENSG00000189403.13	ENST00000341423	hsa-miR-624-3p	30457176	30457181	6mer	30457175	30457195	140	-10.8
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000341423	hsa-miR-641	30460351	30460357	7mer-m8	30460350	30460370	150	-13.83
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000341423	hsa-miR-641	30461224	30461229	6mer	30461223	30461246	140	-12.69
CAediting_393	chr1_1167164_+	ENSG00000189403.13	ENST00000405805	hsa-miR-200b-3p	30460021	30460027	7mer-m8	30460020	30460041	147	-8.87
CAediting_1229415	chr17_67471547_+	ENSG00000189403.13	ENST00000405805	hsa-miR-548aa	30460053	30460059	7mer-m8	30460052	30460076	155	-15.23
CAediting_228905	chr2_188297554_+	ENSG00000189403.13	ENST00000405805	hsa-miR-561-3p	30460173	30460179	7mer-m8	30460172	30460193	145	-8.14
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000405805	hsa-miR-641	30460351	30460357	7mer-m8	30460350	30460370	150	-13.83
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000405805	hsa-miR-641	30461224	30461229	6mer	30461223	30461246	140	-12.69
CAediting_393	chr1_1167164_+	ENSG00000189403.13	ENST00000339872	hsa-miR-200b-3p	30460021	30460027	7mer-m8	30460020	30460041	147	-8.87
CAediting_228905	chr2_188297554_+	ENSG00000189403.13	ENST00000339872	hsa-miR-561-3p	30460173	30460179	7mer-m8	30460172	30460193	145	-8.14
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000339872	hsa-miR-641	30460351	30460357	7mer-m8	30460350	30460370	150	-13.83
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000339872	hsa-miR-641	30461224	30461229	6mer	30461223	30461246	140	-12.69
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000399489	hsa-miR-641	30461224	30461229	6mer	30461223	30461246	140	-12.69
CAediting_1351755	chr19_40282625_-	ENSG00000189403.13	ENST00000399494	hsa-miR-641	30461224	30461229	6mer	30461223	30461246	140	-12.69

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HMGB1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for HMGB1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_956138	chr13_30457256_-	3.76363405774777e-07	0.383227117988365	.	.	.	.
BRCA	CAediting_956138	chr13_30457256_-	6.3507610521498e-14	0.3850843466399	.	.	.	.
LUSC	CAediting_956138	chr13_30457256_-	0.000451763112830158	0.457051107241848	.	.	.	.
LGG	CAediting_956139	chr13_30457261_-	0.000205189634361851	0.472659398818782	.	.	.	.
BRCA	CAediting_956139	chr13_30457261_-	0.00373075992955302	0.265003958697696	.	.	.	.
OV	CAediting_956141	chr13_30457264_-	.	.	0.00817722458227576	0.288465558129919	.	.
BLCA	CAediting_956148	chr13_30457483_-	0.00358408531318202	0.310805929287465	.	.	.	.
LGG	CAediting_956148	chr13_30457483_-	6.06347490374971e-08	0.271402190038651	.	.	.	.
BRCA	CAediting_956148	chr13_30457483_-	2.31718709749171e-34	0.447846851654755	.	.	.	.
LIHC	CAediting_956148	chr13_30457483_-	0.0178753608481928	0.246449290831208	.	.	.	.
CESC	CAediting_956148	chr13_30457483_-	5.53695180349164e-08	0.478527831271532	.	.	.	.
LUAD	CAediting_956148	chr13_30457483_-	0.00865477140599677	0.217296584438174	.	.	.	.
COAD	CAediting_956148	chr13_30457483_-	0.0336944484660702	0.242362445306873	.	.	.	.
LUSC	CAediting_956148	chr13_30457483_-	2.20171711822299e-07	0.40419552632163	.	.	.	.
GBM	CAediting_956148	chr13_30457483_-	0.0152271682247045	0.248370826736907	.	.	.	.
HNSC	CAediting_956148	chr13_30457483_-	0.00179201431891118	0.322991614529826	.	.	.	.
STAD	CAediting_956148	chr13_30457483_-	0.0273074292255194	0.1892896063102	.	.	.	.
THCA	CAediting_956148	chr13_30457483_-	4.0867088691929e-07	0.299737574151048	.	.	.	.
KIRC	CAediting_956148	chr13_30457483_-	0.00102385314454761	0.170970909562056	.	.	.	.
UCEC	CAediting_956148	chr13_30457483_-	0.000475480626050921	0.409524227115906	.	.	.	.
ESCA	CAediting_956148	chr13_30457483_-	0.000260272743372538	0.402373269326356	.	.	.	.
OV	CAediting_956148	chr13_30457483_-	2.501887027977e-05	0.293990038889537	.	.	.	.
SKCM	CAediting_956148	chr13_30457483_-	5.94652025627058e-07	0.449389277017823	.	.	.	.
SARC	CAediting_956148	chr13_30457483_-	2.03204265864504e-06	0.491741416022725	.	.	.	.
LGG	CAediting_956151	chr13_30457499_-	0.00164010218071852	0.296809821323006	.	.	.	.
BRCA	CAediting_956151	chr13_30457499_-	0.0235687066434488	0.200053991065699	.	.	.	.
LGG	CAediting_956152	chr13_30457500_-	0.0404883411016298	0.263114870924275	.	.	.	.
LGG	CAediting_956155	chr13_30457545_-	0.00137293737392995	0.403895600326379	.	.	.	.
BRCA	CAediting_956155	chr13_30457545_-	8.78267080017635e-12	0.391807353648618	.	.	.	.
THCA	CAediting_956155	chr13_30457545_-	0.0120438248877685	0.276103977691996	.	.	.	.

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Relation with cancer stages for HMGB1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_956148	chr13_30457483_-	0.0361481088630792	0.0817003940594898
KIRC	pathologic_stage	CAediting_956148	chr13_30457483_-	0.00647055045527102	0.142481602048714
KIRC	pathologic_stage	CAediting_956151	chr13_30457499_-	0.0186758131135566	0.313396713617106
THCA	pathologic_stage	CAediting_956148	chr13_30457483_-	0.00123241783433934	0.195652549416769

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Relation with survival for HMGB1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for HMGB1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
HMGB1	P09429	DB00608	Chloroquine	High mobility group protein B1	SmallMoleculeDrug	approved\|investigational\|vet_approved

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RelatedDiseases for HMGB1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
HMGB1	C0021368	Inflammation	5	CTD_human
HMGB1	C0027540	Necrosis	2	CTD_human
HMGB1	C0034189	Pyemia	2	CTD_human
HMGB1	C0036690	Septicemia	2	CTD_human
HMGB1	C0243026	Sepsis	2	CTD_human
HMGB1	C1719672	Severe Sepsis	2	CTD_human
HMGB1	C0001973	Alcoholic Intoxication, Chronic	1	PSYGENET
HMGB1	C0005398	Cholestasis, Extrahepatic	1	CTD_human
HMGB1	C0013221	Drug toxicity	1	CTD_human
HMGB1	C0015967	Fever	1	CTD_human
HMGB1	C0019193	Hepatitis, Toxic	1	CTD_human
HMGB1	C0020429	Hyperalgesia	1	CTD_human
HMGB1	C0026766	Multiple Organ Failure	1	CTD_human
HMGB1	C0027051	Myocardial Infarction	1	CTD_human
HMGB1	C0027055	Myocardial Reperfusion Injury	1	CTD_human
HMGB1	C0027796	Neuralgia	1	CTD_human
HMGB1	C0034069	Pulmonary Fibrosis	1	CTD_human
HMGB1	C0038870	Neuralgia, Supraorbital	1	CTD_human
HMGB1	C0041755	Adverse reaction to drug	1	CTD_human
HMGB1	C0042656	Neuralgia, Vidian	1	CTD_human
HMGB1	C0151744	Myocardial Ischemia	1	CTD_human
HMGB1	C0234247	Neuralgia, Atypical	1	CTD_human
HMGB1	C0234249	Neuralgia, Stump	1	CTD_human
HMGB1	C0264939	Systemic Vasculitis	1	CTD_human
HMGB1	C0279626	Squamous cell carcinoma of esophagus	1	CTD_human
HMGB1	C0282548	Leukostasis	1	CTD_human
HMGB1	C0423711	Neuralgia, Perineal	1	CTD_human
HMGB1	C0423712	Neuralgia, Iliohypogastric Nerve	1	CTD_human
HMGB1	C0458247	Allodynia	1	CTD_human
HMGB1	C0751211	Hyperalgesia, Primary	1	CTD_human
HMGB1	C0751212	Hyperalgesia, Secondary	1	CTD_human
HMGB1	C0751213	Tactile Allodynia	1	CTD_human
HMGB1	C0751214	Hyperalgesia, Thermal	1	CTD_human
HMGB1	C0751371	Neuralgia, Ilioinguinal	1	CTD_human
HMGB1	C0751372	Nerve Pain	1	CTD_human
HMGB1	C0751373	Paroxysmal Nerve Pain	1	CTD_human
HMGB1	C0860207	Drug-Induced Liver Disease	1	CTD_human
HMGB1	C1262760	Hepatitis, Drug-Induced	1	CTD_human
HMGB1	C1850383	Neuropathy, Painful	1	CTD_human
HMGB1	C2936719	Mechanical Allodynia	1	CTD_human
HMGB1	C3658290	Drug-Induced Acute Liver Injury	1	CTD_human
HMGB1	C4277682	Chemical and Drug Induced Liver Injury	1	CTD_human
HMGB1	C4279912	Chemically-Induced Liver Toxicity	1	CTD_human
HMGB1	C4721507	Alveolitis, Fibrosing	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene