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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: EHD4 (CAeditome ID:30844) |
Gene summary for EHD4 |
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Gene information | Gene symbol | EHD4 | Gene ID | 30844 |
Gene name | EH domain containing 4 | |
Synonyms | PAST4 | |
Cytomap | 15q15.1 | |
Type of gene | protein-coding | |
Description | EH domain-containing protein 4PAST homolog 4hepatocellular carcinoma-associated protein 10/11hepatocellular carcinoma-associated protein HCA11ortholog of rat pincher | |
Modification date | 20210518 | |
UniProtAcc | Q9H223 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
EHD4 | GO:0005783 | EH domain-containing protein 4 | 0000054 |
EHD4 | GO:0055038 | EH domain-containing protein 4 | 17233914 |
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RNA A-to-I events for EHD4 |
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CAediting_1031999(41898614, -), CAediting_1032000(41898626, -), CAediting_1032001(41898655, -), CAediting_1032002(41898672, -), CAediting_1032003(41898709, -), CAediting_1032004(41898715, -), CAediting_1032005(41898728, -), CAediting_1032006(41898790, -), CAediting_1032007(41898815, -), CAediting_1032008(41898829, -), CAediting_1032009(41898843, -), CAediting_1032010(41898860, -), CAediting_1032011(41900147, -), CAediting_1032012(41910662, -), CAediting_1032013(41912565, -), CAediting_1032014(41912693, -), CAediting_1032015(41913974, -), CAediting_1032016(41914014, -), CAediting_1032017(41914128, -), CAediting_1032018(41915059, -), CAediting_1032019(41915060, -), CAediting_1032020(41915061, -), CAediting_1032021(41915177, -), CAediting_1032022(41915178, -), CAediting_1032023(41915191, -), CAediting_1032024(41915192, -), CAediting_1032025(41915211, -), CAediting_1032026(41915212, -), CAediting_1032027(41931267, -), CAediting_1032028(41931385, -), CAediting_1032029(41931850, -), CAediting_1032030(41939436, -), CAediting_1032031(41939438, -), CAediting_1032032(41939503, -), CAediting_1032033(41939504, -), CAediting_1032034(41939505, -), CAediting_1032035(41939512, -), CAediting_1032036(41942383, -), CAediting_1032037(41942385, -), CAediting_1032038(41942504, -), CAediting_1032039(41942517, -), CAediting_1032040(41942518, -), CAediting_1032041(41946972, -), CAediting_1032042(41946977, -), CAediting_1032043(41957133, -), CAediting_1032044(41960771, -), CAediting_1032045(41964400, -), CAediting_1032046(41968540, -), |
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RNA editing positional annotations for EHD4 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1031999 | chr15_41898614_- | UTR3 |
CAediting_1032000 | chr15_41898626_- | UTR3 |
CAediting_1032001 | chr15_41898655_- | UTR3 |
CAediting_1032002 | chr15_41898672_- | UTR3 |
CAediting_1032003 | chr15_41898709_- | UTR3 |
CAediting_1032004 | chr15_41898715_- | UTR3 |
CAediting_1032005 | chr15_41898728_- | UTR3 |
CAediting_1032006 | chr15_41898790_- | UTR3 |
CAediting_1032007 | chr15_41898815_- | UTR3 |
CAediting_1032008 | chr15_41898829_- | UTR3 |
CAediting_1032009 | chr15_41898843_- | UTR3 |
CAediting_1032010 | chr15_41898860_- | UTR3 |
CAediting_1032011 | chr15_41900147_- | UTR3 |
CAediting_1032012 | chr15_41910662_- | intronic |
CAediting_1032013 | chr15_41912565_- | intronic |
CAediting_1032014 | chr15_41912693_- | intronic |
CAediting_1032015 | chr15_41913974_- | intronic |
CAediting_1032016 | chr15_41914014_- | intronic |
CAediting_1032017 | chr15_41914128_- | intronic |
CAediting_1032018 | chr15_41915059_- | intronic |
CAediting_1032019 | chr15_41915060_- | intronic |
CAediting_1032020 | chr15_41915061_- | intronic |
CAediting_1032021 | chr15_41915177_- | intronic |
CAediting_1032022 | chr15_41915178_- | intronic |
CAediting_1032023 | chr15_41915191_- | intronic |
CAediting_1032024 | chr15_41915192_- | intronic |
CAediting_1032025 | chr15_41915211_- | intronic |
CAediting_1032026 | chr15_41915212_- | intronic |
CAediting_1032027 | chr15_41931267_- | intronic |
CAediting_1032028 | chr15_41931385_- | intronic |
CAediting_1032029 | chr15_41931850_- | intronic |
CAediting_1032030 | chr15_41939436_- | intronic |
CAediting_1032031 | chr15_41939438_- | intronic |
CAediting_1032032 | chr15_41939503_- | intronic |
CAediting_1032033 | chr15_41939504_- | intronic |
CAediting_1032034 | chr15_41939505_- | intronic |
CAediting_1032035 | chr15_41939512_- | intronic |
CAediting_1032036 | chr15_41942383_- | ncRNA_exonic |
CAediting_1032037 | chr15_41942385_- | ncRNA_exonic |
CAediting_1032038 | chr15_41942504_- | ncRNA_exonic |
CAediting_1032039 | chr15_41942517_- | ncRNA_exonic |
CAediting_1032040 | chr15_41942518_- | ncRNA_exonic |
CAediting_1032041 | chr15_41946972_- | ncRNA_intronic |
CAediting_1032042 | chr15_41946977_- | ncRNA_intronic |
CAediting_1032043 | chr15_41957133_- | ncRNA_intronic |
CAediting_1032044 | chr15_41960771_- | ncRNA_intronic |
CAediting_1032045 | chr15_41964400_- | ncRNA_intronic |
CAediting_1032046 | chr15_41968540_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1031999 | chr15_41898614_- | SINE | Alu | AluSc |
CAediting_1032000 | chr15_41898626_- | SINE | Alu | AluSc |
CAediting_1032001 | chr15_41898655_- | SINE | Alu | AluSc |
CAediting_1032002 | chr15_41898672_- | SINE | Alu | AluSc |
CAediting_1032003 | chr15_41898709_- | SINE | Alu | AluSc |
CAediting_1032004 | chr15_41898715_- | SINE | Alu | AluSc |
CAediting_1032005 | chr15_41898728_- | SINE | Alu | AluSc |
CAediting_1032006 | chr15_41898790_- | SINE | Alu | AluSc |
CAediting_1032007 | chr15_41898815_- | SINE | Alu | AluSc |
CAediting_1032008 | chr15_41898829_- | SINE | Alu | AluSc |
CAediting_1032009 | chr15_41898843_- | SINE | Alu | AluSc |
CAediting_1032010 | chr15_41898860_- | SINE | Alu | AluSc |
CAediting_1032012 | chr15_41910662_- | SINE | Alu | AluSx |
CAediting_1032013 | chr15_41912565_- | SINE | Alu | AluSz |
CAediting_1032014 | chr15_41912693_- | SINE | Alu | AluSz |
CAediting_1032027 | chr15_41931267_- | SINE | Alu | AluJb |
CAediting_1032028 | chr15_41931385_- | SINE | Alu | AluJb |
CAediting_1032029 | chr15_41931850_- | SINE | Alu | AluSg |
CAediting_1032030 | chr15_41939436_- | SINE | Alu | AluSx |
CAediting_1032031 | chr15_41939438_- | SINE | Alu | AluSx |
CAediting_1032032 | chr15_41939503_- | SINE | Alu | AluSx |
CAediting_1032033 | chr15_41939504_- | SINE | Alu | AluSx |
CAediting_1032034 | chr15_41939505_- | SINE | Alu | AluSx |
CAediting_1032035 | chr15_41939512_- | SINE | Alu | AluSx |
CAediting_1032036 | chr15_41942383_- | SINE | Alu | AluSq2 |
CAediting_1032037 | chr15_41942385_- | SINE | Alu | AluSq2 |
CAediting_1032038 | chr15_41942504_- | SINE | Alu | AluSq2 |
CAediting_1032039 | chr15_41942517_- | SINE | Alu | AluSq2 |
CAediting_1032040 | chr15_41942518_- | SINE | Alu | AluSq2 |
CAediting_1032041 | chr15_41946972_- | SINE | MIR | MIR |
CAediting_1032042 | chr15_41946977_- | SINE | MIR | MIR |
CAediting_1032043 | chr15_41957133_- | SINE | Alu | AluJb |
CAediting_1032044 | chr15_41960771_- | SINE | Alu | AluSx1 |
CAediting_1032045 | chr15_41964400_- | SINE | Alu | AluJo |
CAediting_1032046 | chr15_41968540_- | SINE | Alu | FLAM_C |
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RNA A-to-I editing events in the alternative splicing sites for EHD4 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for EHD4 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for EHD4 |
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The effects of the RNA editing to the miRNA binding sites for EHD4 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for EHD4 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for EHD4 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BLCA | CAediting_1032011 | chr15_41900147_- | 6.70132041047865e-05 | 0.330384082208327 | . | . | . | . |
BRCA | CAediting_1032011 | chr15_41900147_- | 1.16577173270222e-17 | 0.37738312655462 | . | . | . | . |
LIHC | CAediting_1032011 | chr15_41900147_- | 0.00639808899459027 | 0.211470956196361 | . | . | . | . |
CESC | CAediting_1032011 | chr15_41900147_- | 0.00504007728912812 | 0.278379838559424 | . | . | 0.0422400282162648 | 0.203542265680986 |
LUAD | CAediting_1032011 | chr15_41900147_- | 2.77507946097833e-11 | 0.427624625345124 | . | . | . | . |
LUSC | CAediting_1032011 | chr15_41900147_- | 5.66841226605984e-08 | 0.446570202248408 | . | . | . | . |
PRAD | CAediting_1032011 | chr15_41900147_- | 0.017631551541621 | 0.231226960817594 | . | . | . | . |
HNSC | CAediting_1032011 | chr15_41900147_- | 0.00157904908559743 | 0.23259793408233 | . | . | . | . |
STAD | CAediting_1032011 | chr15_41900147_- | 0.000270469573549521 | 0.349998114270132 | . | . | . | . |
UCEC | CAediting_1032011 | chr15_41900147_- | 1.74340644378875e-06 | 0.437650053175162 | 0.0449076213969205 | 0.191631758079338 | . | . |
OV | CAediting_1032011 | chr15_41900147_- | 0.0107674036651496 | 0.181336377425445 | . | . | . | . |
SKCM | CAediting_1032011 | chr15_41900147_- | 6.67688332023245e-05 | 0.370785939109655 | . | . | . | . |
SARC | CAediting_1032011 | chr15_41900147_- | 2.14371730608522e-06 | 0.510146502977495 | . | . | . | . |
TGCT | CAediting_1032011 | chr15_41900147_- | 1.73666628318244e-06 | 0.514057053413208 | . | . | . | . |
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Relation with cancer stages for EHD4 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_1032011 | chr15_41900147_- | 0.0430964734658644 | 0.0931501844491203 |
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Relation with survival for EHD4 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for EHD4 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for EHD4 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |