Home

Download

Statistics

Examples

Help

Contact

Editing gene: CLEC2D (CAeditome ID:29121)

Gene summary for CLEC2D

Gene summary

Gene information	Gene symbol	CLEC2D
	Gene ID	29121
	Gene name	C-type lectin domain family 2 member D
	Synonyms	CLAX\|LLT1\|OCIL
	Cytomap	12p13.31
	Type of gene	protein-coding
	Description	C-type lectin domain family 2 member DC-type lectin related fC-type lectin superfamily 2, member DLLT-1lectin-like NK cell receptorlectin-like transcript 1osteoclast inhibitory lectin
	Modification date	20210518
	UniProtAcc	Q9UHP7
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CLEC2D	GO:0005783	C-type lectin domain family 2 member D	20843815
CLEC2D	GO:0009986	C-type lectin domain family 2 member D	20843815

Top

RNA A-to-I events for CLEC2D

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000069493.13

RNA A-to-I editing events in Cancer.

CAediting_867284(9672032, +), CAediting_867285(9672037, +), CAediting_867286(9672067, +), CAediting_867287(9675225, +), CAediting_867288(9675401, +), CAediting_867289(9675468, +), CAediting_867290(9677828, +), CAediting_867291(9678588, +), CAediting_867292(9678633, +), CAediting_867293(9678640, +), CAediting_867294(9678677, +), CAediting_867295(9678683, +), CAediting_867296(9678692, +), CAediting_867297(9678750, +), CAediting_867298(9678775, +), CAediting_867299(9678777, +), CAediting_867300(9678818, +), CAediting_867301(9688462, +), CAediting_867302(9688463, +), CAediting_867303(9688484, +), CAediting_867304(9688485, +), CAediting_867305(9688517, +), CAediting_867306(9688559, +), CAediting_867307(9688560, +), CAediting_867308(9688563, +), CAediting_867309(9688568, +), CAediting_867310(9688572, +), CAediting_867311(9688580, +), CAediting_867312(9688590, +), CAediting_867313(9688598, +), CAediting_867314(9688612, +), CAediting_867315(9688621, +), CAediting_867316(9688625, +), CAediting_867317(9688661, +), CAediting_867318(9688665, +), CAediting_867319(9688671, +), CAediting_867320(9688672, +), CAediting_867321(9688675, +), CAediting_867322(9688711, +), CAediting_867323(9692161, +), CAediting_867324(9692162, +), CAediting_867325(9692167, +), CAediting_867326(9692179, +), CAediting_867327(9692210, +), CAediting_867328(9692215, +), CAediting_867329(9692216, +), CAediting_867330(9692237, +), CAediting_867331(9692253, +), CAediting_867332(9692261, +), CAediting_867333(9692263, +), CAediting_867334(9692265, +), CAediting_867335(9692275, +), CAediting_867336(9692277, +), CAediting_867337(9692283, +), CAediting_867338(9692291, +), CAediting_867339(9692297, +), CAediting_867340(9692302, +), CAediting_867341(9692319, +), CAediting_867342(9692320, +), CAediting_867343(9692322, +), CAediting_867344(9692324, +), CAediting_867345(9692349, +), CAediting_867346(9692354, +), CAediting_867347(9692360, +), CAediting_867348(9692362, +), CAediting_867349(9692374, +), CAediting_867350(9692405, +), CAediting_867351(9693829, +), CAediting_867352(9693849, +), CAediting_867353(9693861, +), CAediting_867354(9693864, +), CAediting_867355(9693880, +), CAediting_867356(9693885, +), CAediting_867357(9693905, +), CAediting_867358(9693918, +), CAediting_867359(9693923, +), CAediting_867360(9693945, +), CAediting_867361(9694049, +), CAediting_867362(9694074, +), CAediting_867363(9694076, +), CAediting_867364(9694101, +), CAediting_867365(9695769, +), CAediting_867366(9695807, +), CAediting_867367(9698187, +), CAediting_867368(9698191, +), CAediting_867369(9698192, +),

Top

RNA editing positional annotations for CLEC2D using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_867357	chr12_9693905_+	nonsynonymous SNV	ENST00000460309.1	c.A371G	p.Q124R	D	.	N
CAediting_867359	chr12_9693923_+	nonsynonymous SNV	ENST00000460309.1	c.A389G	p.Q130R	D	.	N

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_867284	chr12_9672032_+	ncRNA_intronic
CAediting_867285	chr12_9672037_+	ncRNA_intronic
CAediting_867286	chr12_9672067_+	ncRNA_intronic
CAediting_867287	chr12_9675225_+	ncRNA_intronic
CAediting_867288	chr12_9675401_+	ncRNA_intronic
CAediting_867289	chr12_9675468_+	ncRNA_intronic
CAediting_867290	chr12_9677828_+	ncRNA_intronic
CAediting_867291	chr12_9678588_+	ncRNA_intronic
CAediting_867292	chr12_9678633_+	ncRNA_intronic
CAediting_867293	chr12_9678640_+	ncRNA_intronic
CAediting_867294	chr12_9678677_+	ncRNA_intronic
CAediting_867295	chr12_9678683_+	ncRNA_intronic
CAediting_867296	chr12_9678692_+	ncRNA_intronic
CAediting_867297	chr12_9678750_+	ncRNA_intronic
CAediting_867298	chr12_9678775_+	ncRNA_intronic
CAediting_867299	chr12_9678777_+	ncRNA_intronic
CAediting_867300	chr12_9678818_+	ncRNA_intronic
CAediting_867301	chr12_9688462_+	intronic
CAediting_867302	chr12_9688463_+	intronic
CAediting_867303	chr12_9688484_+	intronic
CAediting_867304	chr12_9688485_+	intronic
CAediting_867305	chr12_9688517_+	intronic
CAediting_867306	chr12_9688559_+	intronic
CAediting_867307	chr12_9688560_+	intronic
CAediting_867308	chr12_9688563_+	intronic
CAediting_867309	chr12_9688568_+	intronic
CAediting_867310	chr12_9688572_+	intronic
CAediting_867311	chr12_9688580_+	intronic
CAediting_867312	chr12_9688590_+	intronic
CAediting_867313	chr12_9688598_+	intronic
CAediting_867314	chr12_9688612_+	intronic
CAediting_867315	chr12_9688621_+	intronic
CAediting_867316	chr12_9688625_+	intronic
CAediting_867317	chr12_9688661_+	intronic
CAediting_867318	chr12_9688665_+	intronic
CAediting_867319	chr12_9688671_+	intronic
CAediting_867320	chr12_9688672_+	intronic
CAediting_867321	chr12_9688675_+	intronic
CAediting_867322	chr12_9688711_+	intronic
CAediting_867323	chr12_9692161_+	intronic
CAediting_867324	chr12_9692162_+	intronic
CAediting_867325	chr12_9692167_+	intronic
CAediting_867326	chr12_9692179_+	intronic
CAediting_867327	chr12_9692210_+	intronic
CAediting_867328	chr12_9692215_+	intronic
CAediting_867329	chr12_9692216_+	intronic
CAediting_867330	chr12_9692237_+	intronic
CAediting_867331	chr12_9692253_+	intronic
CAediting_867332	chr12_9692261_+	intronic
CAediting_867333	chr12_9692263_+	intronic
CAediting_867334	chr12_9692265_+	intronic
CAediting_867335	chr12_9692275_+	intronic
CAediting_867336	chr12_9692277_+	intronic
CAediting_867337	chr12_9692283_+	intronic
CAediting_867338	chr12_9692291_+	intronic
CAediting_867339	chr12_9692297_+	intronic
CAediting_867340	chr12_9692302_+	intronic
CAediting_867341	chr12_9692319_+	intronic
CAediting_867342	chr12_9692320_+	intronic
CAediting_867343	chr12_9692322_+	intronic
CAediting_867344	chr12_9692324_+	intronic
CAediting_867345	chr12_9692349_+	intronic
CAediting_867346	chr12_9692354_+	intronic
CAediting_867347	chr12_9692360_+	intronic
CAediting_867348	chr12_9692362_+	intronic
CAediting_867349	chr12_9692374_+	intronic
CAediting_867350	chr12_9692405_+	intronic
CAediting_867351	chr12_9693829_+	exonic
CAediting_867352	chr12_9693849_+	exonic
CAediting_867353	chr12_9693861_+	exonic
CAediting_867354	chr12_9693864_+	exonic
CAediting_867355	chr12_9693880_+	exonic
CAediting_867356	chr12_9693885_+	exonic
CAediting_867357	chr12_9693905_+	exonic
CAediting_867358	chr12_9693918_+	exonic
CAediting_867359	chr12_9693923_+	exonic
CAediting_867360	chr12_9693945_+	UTR3
CAediting_867361	chr12_9694049_+	intronic
CAediting_867362	chr12_9694074_+	intronic
CAediting_867363	chr12_9694076_+	intronic
CAediting_867364	chr12_9694101_+	intronic
CAediting_867365	chr12_9695769_+	ncRNA_exonic
CAediting_867366	chr12_9695807_+	ncRNA_exonic
CAediting_867367	chr12_9698187_+	UTR3
CAediting_867368	chr12_9698191_+	UTR3
CAediting_867369	chr12_9698192_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_867284	chr12_9672032_+	LTR	ERVL-MaLR	MSTD
CAediting_867285	chr12_9672037_+	LTR	ERVL-MaLR	MSTD
CAediting_867286	chr12_9672067_+	LTR	ERVL-MaLR	MSTD
CAediting_867287	chr12_9675225_+	SINE	Alu	AluYk2
CAediting_867288	chr12_9675401_+	SINE	Alu	AluYk2
CAediting_867289	chr12_9675468_+	SINE	Alu	AluYk2
CAediting_867290	chr12_9677828_+	SINE	Alu	AluSz
CAediting_867291	chr12_9678588_+	SINE	Alu	AluJr
CAediting_867292	chr12_9678633_+	SINE	Alu	AluJr
CAediting_867293	chr12_9678640_+	SINE	Alu	AluJr
CAediting_867294	chr12_9678677_+	SINE	Alu	AluJr
CAediting_867295	chr12_9678683_+	SINE	Alu	AluJr
CAediting_867296	chr12_9678692_+	SINE	Alu	AluJr
CAediting_867297	chr12_9678750_+	SINE	Alu	AluJr
CAediting_867298	chr12_9678775_+	SINE	Alu	AluJr
CAediting_867299	chr12_9678777_+	SINE	Alu	AluJr
CAediting_867300	chr12_9678818_+	SINE	Alu	AluJr
CAediting_867301	chr12_9688462_+	SINE	Alu	AluSz
CAediting_867302	chr12_9688463_+	SINE	Alu	AluSz
CAediting_867303	chr12_9688484_+	SINE	Alu	AluSz
CAediting_867304	chr12_9688485_+	SINE	Alu	AluSz
CAediting_867305	chr12_9688517_+	SINE	Alu	AluSz
CAediting_867306	chr12_9688559_+	SINE	Alu	AluSz
CAediting_867307	chr12_9688560_+	SINE	Alu	AluSz
CAediting_867308	chr12_9688563_+	SINE	Alu	AluSz
CAediting_867309	chr12_9688568_+	SINE	Alu	AluSz
CAediting_867310	chr12_9688572_+	SINE	Alu	AluSz
CAediting_867311	chr12_9688580_+	SINE	Alu	AluSz
CAediting_867312	chr12_9688590_+	SINE	Alu	AluSz
CAediting_867313	chr12_9688598_+	SINE	Alu	AluSz
CAediting_867314	chr12_9688612_+	SINE	Alu	AluSz
CAediting_867315	chr12_9688621_+	SINE	Alu	AluSz
CAediting_867316	chr12_9688625_+	SINE	Alu	AluSz
CAediting_867317	chr12_9688661_+	SINE	Alu	AluSz
CAediting_867318	chr12_9688665_+	SINE	Alu	AluSz
CAediting_867319	chr12_9688671_+	SINE	Alu	AluSz
CAediting_867320	chr12_9688672_+	SINE	Alu	AluSz
CAediting_867321	chr12_9688675_+	SINE	Alu	AluSz
CAediting_867322	chr12_9688711_+	SINE	Alu	AluSz
CAediting_867323	chr12_9692161_+	SINE	Alu	AluSx
CAediting_867324	chr12_9692162_+	SINE	Alu	AluSx
CAediting_867325	chr12_9692167_+	SINE	Alu	AluSx
CAediting_867326	chr12_9692179_+	SINE	Alu	AluSx
CAediting_867327	chr12_9692210_+	SINE	Alu	AluSx
CAediting_867328	chr12_9692215_+	SINE	Alu	AluSx
CAediting_867329	chr12_9692216_+	SINE	Alu	AluSx
CAediting_867330	chr12_9692237_+	SINE	Alu	AluSx
CAediting_867331	chr12_9692253_+	SINE	Alu	AluSx
CAediting_867332	chr12_9692261_+	SINE	Alu	AluSx
CAediting_867333	chr12_9692263_+	SINE	Alu	AluSx
CAediting_867334	chr12_9692265_+	SINE	Alu	AluSx
CAediting_867335	chr12_9692275_+	SINE	Alu	AluSx
CAediting_867336	chr12_9692277_+	SINE	Alu	AluSx
CAediting_867337	chr12_9692283_+	SINE	Alu	AluSx
CAediting_867338	chr12_9692291_+	SINE	Alu	AluSx
CAediting_867339	chr12_9692297_+	SINE	Alu	AluSx
CAediting_867340	chr12_9692302_+	SINE	Alu	AluSx
CAediting_867341	chr12_9692319_+	SINE	Alu	AluSx
CAediting_867342	chr12_9692320_+	SINE	Alu	AluSx
CAediting_867343	chr12_9692322_+	SINE	Alu	AluSx
CAediting_867344	chr12_9692324_+	SINE	Alu	AluSx
CAediting_867345	chr12_9692349_+	SINE	Alu	AluSx
CAediting_867346	chr12_9692354_+	SINE	Alu	AluSx
CAediting_867347	chr12_9692360_+	SINE	Alu	AluSx
CAediting_867348	chr12_9692362_+	SINE	Alu	AluSx
CAediting_867349	chr12_9692374_+	SINE	Alu	AluSx
CAediting_867350	chr12_9692405_+	SINE	Alu	AluSx
CAediting_867351	chr12_9693829_+	SINE	Alu	AluJb
CAediting_867352	chr12_9693849_+	SINE	Alu	AluJb
CAediting_867353	chr12_9693861_+	SINE	Alu	AluJb
CAediting_867354	chr12_9693864_+	SINE	Alu	AluJb
CAediting_867355	chr12_9693880_+	SINE	Alu	AluJb
CAediting_867356	chr12_9693885_+	SINE	Alu	AluJb
CAediting_867357	chr12_9693905_+	SINE	Alu	AluJb
CAediting_867358	chr12_9693918_+	SINE	Alu	AluJb
CAediting_867359	chr12_9693923_+	SINE	Alu	AluJb
CAediting_867360	chr12_9693945_+	SINE	Alu	AluJb
CAediting_867361	chr12_9694049_+	SINE	Alu	AluJb
CAediting_867362	chr12_9694074_+	SINE	Alu	AluJb
CAediting_867363	chr12_9694076_+	SINE	Alu	AluJb
CAediting_867364	chr12_9694101_+	SINE	Alu	AluJb
CAediting_867367	chr12_9698187_+	LINE	L1	L1MA7
CAediting_867368	chr12_9698191_+	LINE	L1	L1MA7
CAediting_867369	chr12_9698192_+	LINE	L1	L1MA7

Top

RNA A-to-I editing events in the alternative splicing sites for CLEC2D

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_867351	chr12_9693829_+	9693810:9693832	3SS	0+1i	GTTTGTATTTTTGAGAGACAGGG	-22.2	GTTTGTATTTTTGAGAGACGGGG	-13.45
IR	CAediting_867351	chr12_9693829_+	9693810:9693832	3SS	0+1i	GTTTGTATTTTTGAGAGACAGGG	-22.2	GTTTGTATTTTTGAGAGACGGGG	-13.45
MEX_2	CAediting_867351	chr12_9693829_+	9693810:9693832	3SS	0+1i	GTTTGTATTTTTGAGAGACAGGG	-22.2	GTTTGTATTTTTGAGAGACGGGG	-13.45

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000069493.13.CLEC2D.

Correlation between RNA A-to-I editing and PSI for ENSG00000069493.13.CLEC2D.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CLEC2D

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for CLEC2D

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for CLEC2D

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_867354	chr12_9693864_+	ENSG00000069493.13	ENST00000325960	hsa-miR-324-3p	9693858	9693864	7mer-m8	9693843	9693865	148.00	-24.11
CAediting_867354	chr12_9693864_+	ENSG00000069493.13	ENST00000479877	hsa-miR-324-3p	9693858	9693864	7mer-m8	9693843	9693865	148.00	-24.11
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-340-3p	9693823	9693829	7mer-m8	9693809	9693830	140.00	-15.94
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6827-3p	9693823	9693829	7mer-m8	9693810	9693830	146.00	-16.82
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-340-3p	9693823	9693829	7mer-m8	9693809	9693830	140.00	-15.94
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6827-3p	9693823	9693829	7mer-m8	9693810	9693830	146.00	-16.82
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-483-5p	9693914	9693920	7mer-m8	9693900	9693921	155.00	-26.57
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-483-5p	9693914	9693920	7mer-m8	9693900	9693921	155.00	-26.57
CAediting_867366	chr12_9695807_+	ENSG00000069493.13	ENST00000444971	hsa-miR-4315	9695800	9695806	7mer-m8	9695791	9695807	145.00	-16.45
CAediting_867366	chr12_9695807_+	ENSG00000069493.13	ENST00000444971	hsa-miR-4315	9695800	9695806	7mer-m8	9695791	9695807	145.00	-16.45
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000325960	hsa-miR-3940-3p	9693846	9693852	7mer-m8	9693832	9693853	151.00	-22.47
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000479877	hsa-miR-3940-3p	9693846	9693852	7mer-m8	9693832	9693853	151.00	-22.47
CAediting_867360	chr12_9693945_+	ENSG00000069493.13	ENST00000325960	hsa-miR-17-3p	9693941	9693947	7mer-m8	9693926	9693947	150.00	-18.18
CAediting_867360	chr12_9693945_+	ENSG00000069493.13	ENST00000479877	hsa-miR-17-3p	9693941	9693947	7mer-m8	9693926	9693947	150.00	-18.18

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-10a-5p	9693826	9693832	7mer-m8	9693811	9693833	151	-16.66
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-10b-5p	9693826	9693832	7mer-m8	9693811	9693833	143	-13.89
CAediting_867360	chr12_9693945_+	ENSG00000069493.13	ENST00000325960	hsa-miR-20b-3p	9693941	9693947	7mer-m8	9693926	9693947	153	-17.33
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-30b-3p	9693911	9693917	7mer-m8	9693898	9693918	144	-16.84
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-3689a-3p	9693911	9693917	7mer-m8	9693897	9693918	142	-16.36
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-3689b-3p	9693911	9693917	7mer-m8	9693899	9693918	148	-16.64
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-3689c	9693911	9693917	7mer-m8	9693899	9693918	148	-16.64
CAediting_867359	chr12_9693923_+	ENSG00000069493.13	ENST00000325960	hsa-miR-3929	9693920	9693926	7mer-m8	9693905	9693927	154	-23.49
CAediting_867359	chr12_9693923_+	ENSG00000069493.13	ENST00000325960	hsa-miR-4478	9693920	9693926	7mer-m8	9693911	9693927	155	-27.09
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-4725-5p	9693827	9693833	7mer-m8	9693814	9693834	140	-17.08
CAediting_867353	chr12_9693861_+	ENSG00000069493.13	ENST00000325960	hsa-miR-4793-3p	9693855	9693861	7mer-m8	9693840	9693862	153	-20.45
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-504-5p	9693827	9693833	7mer-m8	9693814	9693834	146	-19.36
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-5699-3p	9693824	9693830	7mer-m8	9693810	9693831	151	-18.4
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000325960	hsa-miR-661	9693845	9693851	7mer-m8	9693829	9693852	147	-20.53
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6742-3p	9693844	9693850	7mer-m8	9693832	9693851	140	-13.8
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6779-5p	9693911	9693917	7mer-m8	9693895	9693918	142	-21.91
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6780a-5p	9693911	9693917	7mer-m8	9693896	9693918	140	-19.29
CAediting_867355	chr12_9693880_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6807-5p	9693873	9693879	7mer-m8	9693857	9693880	146	-20.56
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6818-3p	9693822	9693828	7mer-m8	9693807	9693829	143	-14.97
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6861-5p	9693843	9693849	7mer-m8	9693825	9693850	149	-24.02
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000325960	hsa-miR-6871-5p	9693912	9693918	7mer-m8	9693897	9693919	143	-17.35
CAediting_867366	chr12_9695807_+	ENSG00000069493.13	ENST00000444971	hsa-miR-4494	9695805	9695811	7mer-m8	9695794	9695812	152	-19.92
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-10a-5p	9693826	9693832	7mer-m8	9693811	9693833	151	-16.66
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-10b-5p	9693826	9693832	7mer-m8	9693811	9693833	143	-13.89
CAediting_867360	chr12_9693945_+	ENSG00000069493.13	ENST00000479877	hsa-miR-20b-3p	9693941	9693947	7mer-m8	9693926	9693947	153	-17.33
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-30b-3p	9693911	9693917	7mer-m8	9693898	9693918	144	-16.84
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-3689a-3p	9693911	9693917	7mer-m8	9693897	9693918	142	-16.36
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-3689b-3p	9693911	9693917	7mer-m8	9693899	9693918	148	-16.64
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-3689c	9693911	9693917	7mer-m8	9693899	9693918	148	-16.64
CAediting_867359	chr12_9693923_+	ENSG00000069493.13	ENST00000479877	hsa-miR-3929	9693920	9693926	7mer-m8	9693905	9693927	154	-23.49
CAediting_867359	chr12_9693923_+	ENSG00000069493.13	ENST00000479877	hsa-miR-4478	9693920	9693926	7mer-m8	9693911	9693927	155	-27.09
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-4725-5p	9693827	9693833	7mer-m8	9693814	9693834	140	-17.08
CAediting_867353	chr12_9693861_+	ENSG00000069493.13	ENST00000479877	hsa-miR-4793-3p	9693855	9693861	7mer-m8	9693840	9693862	153	-20.45
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-504-5p	9693827	9693833	7mer-m8	9693814	9693834	146	-19.36
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-5699-3p	9693824	9693830	7mer-m8	9693810	9693831	151	-18.4
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000479877	hsa-miR-661	9693845	9693851	7mer-m8	9693829	9693852	147	-20.53
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6742-3p	9693844	9693850	7mer-m8	9693832	9693851	140	-13.8
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6779-5p	9693911	9693917	7mer-m8	9693895	9693918	142	-21.91
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6780a-5p	9693911	9693917	7mer-m8	9693896	9693918	140	-19.29
CAediting_867355	chr12_9693880_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6807-5p	9693873	9693879	7mer-m8	9693857	9693880	146	-20.56
CAediting_867351	chr12_9693829_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6818-3p	9693822	9693828	7mer-m8	9693807	9693829	143	-14.97
CAediting_867352	chr12_9693849_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6861-5p	9693843	9693849	7mer-m8	9693825	9693850	149	-24.02
CAediting_867358	chr12_9693918_+	ENSG00000069493.13	ENST00000479877	hsa-miR-6871-5p	9693912	9693918	7mer-m8	9693897	9693919	143	-17.35

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000069493.13	ENST00000444971	hsa-miR-200b-3p	9695326	9695332	7mer-m8	9695310	9695333	149	-15.01
CAediting_1160181	chr17_7017644_-	ENSG00000069493.13	ENST00000325960	hsa-miR-195-3p	9693585	9693590	6mer	9693570	9693591	140	-20.11
CAediting_1054808	chr15_66496985_-	ENSG00000069493.13	ENST00000444971	hsa-miR-4512	9695419	9695426	8mer-1a	9695405	9695426	150	-22.39
CAediting_228905	chr2_188297554_+	ENSG00000069493.13	ENST00000444971	hsa-miR-561-3p	9695781	9695787	7mer-m8	9695767	9695788	165	-15.68
CAediting_1160181	chr17_7017644_-	ENSG00000069493.13	ENST00000479877	hsa-miR-195-3p	9693585	9693590	6mer	9693570	9693591	140	-20.11

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000069493.13	ENST00000325960	hsa-miR-195-3p	9693539	9693545	7mer-m8	9693522	9693546	150	-17.31
CAediting_1229414	chr17_67471546_+	ENSG00000069493.13	ENST00000325960	hsa-miR-548aa	9693796	9693802	7mer-m8	9693779	9693803	140	-7.46
CAediting_1229415	chr17_67471547_+	ENSG00000069493.13	ENST00000325960	hsa-miR-548aa	9693796	9693802	7mer-m8	9693779	9693803	140	-7.46
CAediting_1351755	chr19_40282625_-	ENSG00000069493.13	ENST00000444971	hsa-miR-641	9695194	9695201	8mer-1a	9695178	9695201	145	-11.89
CAediting_1160181	chr17_7017644_-	ENSG00000069493.13	ENST00000479877	hsa-miR-195-3p	9693539	9693545	7mer-m8	9693522	9693546	150	-17.31
CAediting_1229413	chr17_67471544_+	ENSG00000069493.13	ENST00000479877	hsa-miR-548aa	9693796	9693802	7mer-m8	9693779	9693803	140	-7.46
CAediting_1229414	chr17_67471546_+	ENSG00000069493.13	ENST00000479877	hsa-miR-548aa	9693796	9693802	7mer-m8	9693779	9693803	140	-7.46
CAediting_1229415	chr17_67471547_+	ENSG00000069493.13	ENST00000479877	hsa-miR-548aa	9693796	9693802	7mer-m8	9693779	9693803	140	-7.46

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for CLEC2D

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for CLEC2D

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

Top

Relation with cancer stages for CLEC2D

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for CLEC2D

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for CLEC2D

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for CLEC2D

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene