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Editing gene: MRPS28 (CAeditome ID:28957)

Gene summary for MRPS28

Gene summary

Gene information	Gene symbol	MRPS28
	Gene ID	28957
	Gene name	mitochondrial ribosomal protein S28
	Synonyms	COXPD47\|HSPC007\|MRP-S28\|MRP-S35\|MRPS35
	Cytomap	8q21.13
	Type of gene	protein-coding
	Description	28S ribosomal protein S28, mitochondrial28S ribosomal protein S35, mitochondrialS28mtS35mtmitochondrial 28S ribosomal protein S35mitochondrial small ribosomal subunit protein bS1m
	Modification date	20210518
	UniProtAcc	Q9Y2Q9
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
MRPS28	GO:0005739	28S ribosomal protein S28, mitochondrial	0000052

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RNA A-to-I events for MRPS28

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000147586.8

RNA A-to-I editing events in Cancer.

CAediting_647021(79919414, -), CAediting_647022(79919452, -), CAediting_647023(79919455, -), CAediting_647024(79919593, -), CAediting_647025(79925901, -), CAediting_647026(79936117, -), CAediting_647027(79936322, -), CAediting_647028(79936933, -), CAediting_647029(79937093, -), CAediting_647030(79941068, -), CAediting_647031(79941083, -), CAediting_647032(79943189, -), CAediting_647033(79944761, -), CAediting_647034(79944801, -), CAediting_647035(79944822, -), CAediting_647036(79944826, -), CAediting_647037(79944838, -), CAediting_647038(79944860, -), CAediting_647039(79944868, -), CAediting_647040(79944873, -), CAediting_647041(79944883, -), CAediting_647042(79944890, -), CAediting_647043(79944918, -), CAediting_647044(79944967, -), CAediting_647045(79944968, -), CAediting_647046(79945531, -), CAediting_647047(79945532, -), CAediting_647048(79945553, -), CAediting_647049(79945597, -), CAediting_647050(79947692, -), CAediting_647051(79947702, -), CAediting_647052(79947707, -), CAediting_647053(79947711, -), CAediting_647054(79947724, -), CAediting_647055(79947727, -), CAediting_647056(79947731, -), CAediting_647057(79947743, -), CAediting_647058(79947767, -), CAediting_647059(79947799, -), CAediting_647060(79947833, -), CAediting_647061(79947883, -), CAediting_647062(79947904, -), CAediting_647063(79947909, -), CAediting_647064(79947910, -), CAediting_647065(79947916, -), CAediting_647066(79948045, -), CAediting_647067(79948060, -), CAediting_647068(79948064, -), CAediting_647069(79948071, -), CAediting_647070(79948080, -), CAediting_647071(79948084, -), CAediting_647072(79948085, -), CAediting_647073(79948094, -), CAediting_647074(79948096, -), CAediting_647075(79948109, -), CAediting_647076(79948112, -), CAediting_647077(79948126, -), CAediting_647078(79948134, -), CAediting_647079(79948148, -), CAediting_647080(79948152, -), CAediting_647081(79948155, -), CAediting_647082(79948156, -), CAediting_647083(79948157, -), CAediting_647084(79948158, -), CAediting_647085(79948159, -), CAediting_647086(79948160, -), CAediting_647087(79948162, -), CAediting_647088(79948165, -), CAediting_647089(79948166, -), CAediting_647090(79948167, -), CAediting_647091(79948182, -), CAediting_647092(79948183, -), CAediting_647093(79948184, -), CAediting_647094(79948188, -), CAediting_647095(79948205, -), CAediting_647096(79948213, -), CAediting_647097(79948214, -), CAediting_647098(79948219, -), CAediting_647099(79948237, -), CAediting_647100(79948243, -), CAediting_647101(79948254, -), CAediting_647102(79948259, -), CAediting_647103(79948260, -), CAediting_647104(79948266, -), CAediting_647105(79948268, -), CAediting_647106(79948278, -), CAediting_647107(79949159, -), CAediting_647108(79949171, -), CAediting_647109(79949172, -), CAediting_647110(79949173, -), CAediting_647111(79949194, -), CAediting_647112(79949222, -), CAediting_647113(79949233, -), CAediting_647114(79949265, -), CAediting_647115(79949266, -), CAediting_647116(79949292, -), CAediting_647117(79954143, -), CAediting_647118(79954210, -), CAediting_647119(79957463, -), CAediting_647120(79957464, -), CAediting_647121(79957484, -), CAediting_647122(79957487, -), CAediting_647123(79957517, -), CAediting_647124(79957530, -), CAediting_647125(79957537, -), CAediting_647126(79957538, -), CAediting_647127(79957590, -), CAediting_647128(79957594, -), CAediting_647129(79957596, -), CAediting_647130(79957618, -), CAediting_647131(79957650, -), CAediting_647132(79957659, -), CAediting_647133(79957662, -), CAediting_647134(79957669, -), CAediting_647135(79957672, -), CAediting_647136(79957673, -), CAediting_647137(79957675, -), CAediting_647138(79957687, -), CAediting_647139(79957695, -), CAediting_647140(79957717, -), CAediting_647141(79973968, -), CAediting_647142(79973979, -), CAediting_647143(79974351, -), CAediting_647144(79975093, -), CAediting_647145(79976160, -), CAediting_647146(79976169, -), CAediting_647147(79976611, -), CAediting_647148(79976673, -), CAediting_647149(79977722, -), CAediting_647150(79977731, -), CAediting_647151(79977754, -), CAediting_647152(79977755, -), CAediting_647153(79977757, -), CAediting_647154(80028772, -),

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RNA editing positional annotations for MRPS28 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_647154	chr8_80028772_-	nonsynonymous SNV	ENST00000520946.1	c.A10G	p.R4G	D	.	N
CAediting_647154	chr8_80028772_-	nonsynonymous SNV	ENST00000521434.4	c.A10G	p.R4G	D	.	N

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_647021	chr8_79919414_-	intronic
CAediting_647022	chr8_79919452_-	intronic
CAediting_647023	chr8_79919455_-	intronic
CAediting_647024	chr8_79919593_-	intronic
CAediting_647025	chr8_79925901_-	intronic
CAediting_647026	chr8_79936117_-	intronic
CAediting_647027	chr8_79936322_-	intronic
CAediting_647028	chr8_79936933_-	intronic
CAediting_647029	chr8_79937093_-	intronic
CAediting_647030	chr8_79941068_-	intronic
CAediting_647031	chr8_79941083_-	intronic
CAediting_647032	chr8_79943189_-	intronic
CAediting_647033	chr8_79944761_-	intronic
CAediting_647034	chr8_79944801_-	intronic
CAediting_647035	chr8_79944822_-	intronic
CAediting_647036	chr8_79944826_-	intronic
CAediting_647037	chr8_79944838_-	intronic
CAediting_647038	chr8_79944860_-	intronic
CAediting_647039	chr8_79944868_-	intronic
CAediting_647040	chr8_79944873_-	intronic
CAediting_647041	chr8_79944883_-	intronic
CAediting_647042	chr8_79944890_-	intronic
CAediting_647043	chr8_79944918_-	intronic
CAediting_647044	chr8_79944967_-	intronic
CAediting_647045	chr8_79944968_-	intronic
CAediting_647046	chr8_79945531_-	intronic
CAediting_647047	chr8_79945532_-	intronic
CAediting_647048	chr8_79945553_-	intronic
CAediting_647049	chr8_79945597_-	intronic
CAediting_647050	chr8_79947692_-	intronic
CAediting_647051	chr8_79947702_-	intronic
CAediting_647052	chr8_79947707_-	intronic
CAediting_647053	chr8_79947711_-	intronic
CAediting_647054	chr8_79947724_-	intronic
CAediting_647055	chr8_79947727_-	intronic
CAediting_647056	chr8_79947731_-	intronic
CAediting_647057	chr8_79947743_-	intronic
CAediting_647058	chr8_79947767_-	intronic
CAediting_647059	chr8_79947799_-	intronic
CAediting_647060	chr8_79947833_-	intronic
CAediting_647061	chr8_79947883_-	intronic
CAediting_647062	chr8_79947904_-	intronic
CAediting_647063	chr8_79947909_-	intronic
CAediting_647064	chr8_79947910_-	intronic
CAediting_647065	chr8_79947916_-	intronic
CAediting_647066	chr8_79948045_-	intronic
CAediting_647067	chr8_79948060_-	intronic
CAediting_647068	chr8_79948064_-	intronic
CAediting_647069	chr8_79948071_-	intronic
CAediting_647070	chr8_79948080_-	intronic
CAediting_647071	chr8_79948084_-	intronic
CAediting_647072	chr8_79948085_-	intronic
CAediting_647073	chr8_79948094_-	intronic
CAediting_647074	chr8_79948096_-	intronic
CAediting_647075	chr8_79948109_-	intronic
CAediting_647076	chr8_79948112_-	intronic
CAediting_647077	chr8_79948126_-	intronic
CAediting_647078	chr8_79948134_-	intronic
CAediting_647079	chr8_79948148_-	intronic
CAediting_647080	chr8_79948152_-	intronic
CAediting_647081	chr8_79948155_-	intronic
CAediting_647082	chr8_79948156_-	intronic
CAediting_647083	chr8_79948157_-	intronic
CAediting_647084	chr8_79948158_-	intronic
CAediting_647085	chr8_79948159_-	intronic
CAediting_647086	chr8_79948160_-	intronic
CAediting_647087	chr8_79948162_-	intronic
CAediting_647088	chr8_79948165_-	intronic
CAediting_647089	chr8_79948166_-	intronic
CAediting_647090	chr8_79948167_-	intronic
CAediting_647091	chr8_79948182_-	intronic
CAediting_647092	chr8_79948183_-	intronic
CAediting_647093	chr8_79948184_-	intronic
CAediting_647094	chr8_79948188_-	intronic
CAediting_647095	chr8_79948205_-	intronic
CAediting_647096	chr8_79948213_-	intronic
CAediting_647097	chr8_79948214_-	intronic
CAediting_647098	chr8_79948219_-	intronic
CAediting_647099	chr8_79948237_-	intronic
CAediting_647100	chr8_79948243_-	intronic
CAediting_647101	chr8_79948254_-	intronic
CAediting_647102	chr8_79948259_-	intronic
CAediting_647103	chr8_79948260_-	intronic
CAediting_647104	chr8_79948266_-	intronic
CAediting_647105	chr8_79948268_-	intronic
CAediting_647106	chr8_79948278_-	intronic
CAediting_647107	chr8_79949159_-	intronic
CAediting_647108	chr8_79949171_-	intronic
CAediting_647109	chr8_79949172_-	intronic
CAediting_647110	chr8_79949173_-	intronic
CAediting_647111	chr8_79949194_-	intronic
CAediting_647112	chr8_79949222_-	intronic
CAediting_647113	chr8_79949233_-	intronic
CAediting_647114	chr8_79949265_-	intronic
CAediting_647115	chr8_79949266_-	intronic
CAediting_647116	chr8_79949292_-	intronic
CAediting_647117	chr8_79954143_-	intronic
CAediting_647118	chr8_79954210_-	intronic
CAediting_647119	chr8_79957463_-	intronic
CAediting_647120	chr8_79957464_-	intronic
CAediting_647121	chr8_79957484_-	intronic
CAediting_647122	chr8_79957487_-	intronic
CAediting_647123	chr8_79957517_-	intronic
CAediting_647124	chr8_79957530_-	intronic
CAediting_647125	chr8_79957537_-	intronic
CAediting_647126	chr8_79957538_-	intronic
CAediting_647127	chr8_79957590_-	intronic
CAediting_647128	chr8_79957594_-	intronic
CAediting_647129	chr8_79957596_-	intronic
CAediting_647130	chr8_79957618_-	intronic
CAediting_647131	chr8_79957650_-	intronic
CAediting_647132	chr8_79957659_-	intronic
CAediting_647133	chr8_79957662_-	intronic
CAediting_647134	chr8_79957669_-	intronic
CAediting_647135	chr8_79957672_-	intronic
CAediting_647136	chr8_79957673_-	intronic
CAediting_647137	chr8_79957675_-	intronic
CAediting_647138	chr8_79957687_-	intronic
CAediting_647139	chr8_79957695_-	intronic
CAediting_647140	chr8_79957717_-	intronic
CAediting_647141	chr8_79973968_-	ncRNA_intronic
CAediting_647142	chr8_79973979_-	ncRNA_intronic
CAediting_647143	chr8_79974351_-	ncRNA_intronic
CAediting_647144	chr8_79975093_-	ncRNA_intronic
CAediting_647145	chr8_79976160_-	ncRNA_intronic
CAediting_647146	chr8_79976169_-	ncRNA_intronic
CAediting_647147	chr8_79976611_-	ncRNA_intronic
CAediting_647148	chr8_79976673_-	ncRNA_intronic
CAediting_647149	chr8_79977722_-	ncRNA_intronic
CAediting_647150	chr8_79977731_-	ncRNA_intronic
CAediting_647151	chr8_79977754_-	ncRNA_intronic
CAediting_647152	chr8_79977755_-	ncRNA_intronic
CAediting_647153	chr8_79977757_-	ncRNA_intronic
CAediting_647154	chr8_80028772_-	exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_647021	chr8_79919414_-	SINE	Alu	AluJr4
CAediting_647022	chr8_79919452_-	SINE	Alu	AluJr4
CAediting_647023	chr8_79919455_-	SINE	Alu	AluJr4
CAediting_647024	chr8_79919593_-	SINE	Alu	AluJr4
CAediting_647025	chr8_79925901_-	SINE	Alu	AluJb
CAediting_647026	chr8_79936117_-	SINE	Alu	AluJr4
CAediting_647027	chr8_79936322_-	SINE	Alu	AluJr4
CAediting_647028	chr8_79936933_-	SINE	Alu	AluSx1
CAediting_647029	chr8_79937093_-	SINE	Alu	AluSx1
CAediting_647030	chr8_79941068_-	SINE	Alu	AluJr
CAediting_647031	chr8_79941083_-	SINE	Alu	AluJr
CAediting_647033	chr8_79944761_-	SINE	Alu	AluSz
CAediting_647034	chr8_79944801_-	SINE	Alu	AluSz
CAediting_647035	chr8_79944822_-	SINE	Alu	AluSz
CAediting_647036	chr8_79944826_-	SINE	Alu	AluSz
CAediting_647037	chr8_79944838_-	SINE	Alu	AluSz
CAediting_647038	chr8_79944860_-	SINE	Alu	AluSz
CAediting_647039	chr8_79944868_-	SINE	Alu	AluSz
CAediting_647040	chr8_79944873_-	SINE	Alu	AluSz
CAediting_647041	chr8_79944883_-	SINE	Alu	AluSz
CAediting_647042	chr8_79944890_-	SINE	Alu	AluSz
CAediting_647043	chr8_79944918_-	SINE	Alu	AluSz
CAediting_647044	chr8_79944967_-	SINE	Alu	AluSz
CAediting_647045	chr8_79944968_-	SINE	Alu	AluSz
CAediting_647046	chr8_79945531_-	LINE	L1	L1MB4
CAediting_647047	chr8_79945532_-	LINE	L1	L1MB4
CAediting_647048	chr8_79945553_-	LINE	L1	L1MB4
CAediting_647049	chr8_79945597_-	LINE	L1	L1MB4
CAediting_647050	chr8_79947692_-	SINE	Alu	AluY
CAediting_647051	chr8_79947702_-	SINE	Alu	AluY
CAediting_647052	chr8_79947707_-	SINE	Alu	AluY
CAediting_647053	chr8_79947711_-	SINE	Alu	AluY
CAediting_647054	chr8_79947724_-	SINE	Alu	AluY
CAediting_647055	chr8_79947727_-	SINE	Alu	AluY
CAediting_647056	chr8_79947731_-	SINE	Alu	AluY
CAediting_647057	chr8_79947743_-	SINE	Alu	AluY
CAediting_647058	chr8_79947767_-	SINE	Alu	AluY
CAediting_647059	chr8_79947799_-	SINE	Alu	AluY
CAediting_647060	chr8_79947833_-	SINE	Alu	AluY
CAediting_647061	chr8_79947883_-	SINE	Alu	AluY
CAediting_647062	chr8_79947904_-	SINE	Alu	AluY
CAediting_647063	chr8_79947909_-	SINE	Alu	AluY
CAediting_647064	chr8_79947910_-	SINE	Alu	AluY
CAediting_647065	chr8_79947916_-	SINE	Alu	AluY
CAediting_647066	chr8_79948045_-	SINE	Alu	AluSz
CAediting_647067	chr8_79948060_-	SINE	Alu	AluSz
CAediting_647068	chr8_79948064_-	SINE	Alu	AluSz
CAediting_647069	chr8_79948071_-	SINE	Alu	AluSz
CAediting_647070	chr8_79948080_-	SINE	Alu	AluSz
CAediting_647071	chr8_79948084_-	SINE	Alu	AluSz
CAediting_647072	chr8_79948085_-	SINE	Alu	AluSz
CAediting_647073	chr8_79948094_-	SINE	Alu	AluSz
CAediting_647074	chr8_79948096_-	SINE	Alu	AluSz
CAediting_647075	chr8_79948109_-	SINE	Alu	AluSz
CAediting_647076	chr8_79948112_-	SINE	Alu	AluSz
CAediting_647077	chr8_79948126_-	SINE	Alu	AluSz
CAediting_647078	chr8_79948134_-	SINE	Alu	AluSz
CAediting_647079	chr8_79948148_-	SINE	Alu	AluSz
CAediting_647080	chr8_79948152_-	SINE	Alu	AluSz
CAediting_647081	chr8_79948155_-	SINE	Alu	AluSz
CAediting_647082	chr8_79948156_-	SINE	Alu	AluSz
CAediting_647083	chr8_79948157_-	SINE	Alu	AluSz
CAediting_647084	chr8_79948158_-	SINE	Alu	AluSz
CAediting_647085	chr8_79948159_-	SINE	Alu	AluSz
CAediting_647086	chr8_79948160_-	SINE	Alu	AluSz
CAediting_647087	chr8_79948162_-	SINE	Alu	AluSz
CAediting_647088	chr8_79948165_-	SINE	Alu	AluSz
CAediting_647089	chr8_79948166_-	SINE	Alu	AluSz
CAediting_647090	chr8_79948167_-	SINE	Alu	AluSz
CAediting_647091	chr8_79948182_-	SINE	Alu	AluSz
CAediting_647092	chr8_79948183_-	SINE	Alu	AluSz
CAediting_647093	chr8_79948184_-	SINE	Alu	AluSz
CAediting_647094	chr8_79948188_-	SINE	Alu	AluSz
CAediting_647095	chr8_79948205_-	SINE	Alu	AluSz
CAediting_647096	chr8_79948213_-	SINE	Alu	AluSz
CAediting_647097	chr8_79948214_-	SINE	Alu	AluSz
CAediting_647098	chr8_79948219_-	SINE	Alu	AluSz
CAediting_647099	chr8_79948237_-	SINE	Alu	AluSz
CAediting_647100	chr8_79948243_-	SINE	Alu	AluSz
CAediting_647101	chr8_79948254_-	SINE	Alu	AluSz
CAediting_647102	chr8_79948259_-	SINE	Alu	AluSz
CAediting_647103	chr8_79948260_-	SINE	Alu	AluSz
CAediting_647104	chr8_79948266_-	SINE	Alu	AluSz
CAediting_647105	chr8_79948268_-	SINE	Alu	AluSz
CAediting_647106	chr8_79948278_-	SINE	Alu	AluSz
CAediting_647107	chr8_79949159_-	SINE	Alu	AluSg4
CAediting_647108	chr8_79949171_-	SINE	Alu	AluSg4
CAediting_647109	chr8_79949172_-	SINE	Alu	AluSg4
CAediting_647110	chr8_79949173_-	SINE	Alu	AluSg4
CAediting_647111	chr8_79949194_-	SINE	Alu	AluSg4
CAediting_647112	chr8_79949222_-	SINE	Alu	AluSg4
CAediting_647113	chr8_79949233_-	SINE	Alu	AluSg4
CAediting_647114	chr8_79949265_-	SINE	Alu	AluSg4
CAediting_647115	chr8_79949266_-	SINE	Alu	AluSg4
CAediting_647116	chr8_79949292_-	SINE	Alu	AluSg4
CAediting_647117	chr8_79954143_-	SINE	Alu	FLAM_A
CAediting_647118	chr8_79954210_-	SINE	Alu	FLAM_A
CAediting_647119	chr8_79957463_-	SINE	Alu	AluJb
CAediting_647120	chr8_79957464_-	SINE	Alu	AluJb
CAediting_647121	chr8_79957484_-	SINE	Alu	AluJb
CAediting_647122	chr8_79957487_-	SINE	Alu	AluJb
CAediting_647123	chr8_79957517_-	SINE	Alu	AluJb
CAediting_647124	chr8_79957530_-	SINE	Alu	AluJb
CAediting_647125	chr8_79957537_-	SINE	Alu	AluJb
CAediting_647126	chr8_79957538_-	SINE	Alu	AluJb
CAediting_647127	chr8_79957590_-	SINE	Alu	AluJb
CAediting_647128	chr8_79957594_-	SINE	Alu	AluJb
CAediting_647129	chr8_79957596_-	SINE	Alu	AluJb
CAediting_647130	chr8_79957618_-	SINE	Alu	AluJb
CAediting_647131	chr8_79957650_-	SINE	Alu	AluJb
CAediting_647132	chr8_79957659_-	SINE	Alu	AluJb
CAediting_647133	chr8_79957662_-	SINE	Alu	AluJb
CAediting_647134	chr8_79957669_-	SINE	Alu	AluJb
CAediting_647135	chr8_79957672_-	SINE	Alu	AluJb
CAediting_647136	chr8_79957673_-	SINE	Alu	AluJb
CAediting_647137	chr8_79957675_-	SINE	Alu	AluJb
CAediting_647138	chr8_79957687_-	SINE	Alu	AluJb
CAediting_647139	chr8_79957695_-	SINE	Alu	AluJb
CAediting_647140	chr8_79957717_-	SINE	Alu	AluJb
CAediting_647141	chr8_79973968_-	SINE	Alu	AluJr
CAediting_647142	chr8_79973979_-	SINE	Alu	AluJr
CAediting_647143	chr8_79974351_-	SINE	Alu	AluY
CAediting_647144	chr8_79975093_-	SINE	Alu	AluJb
CAediting_647145	chr8_79976160_-	SINE	Alu	AluSp
CAediting_647146	chr8_79976169_-	SINE	Alu	AluSp
CAediting_647147	chr8_79976611_-	SINE	Alu	AluSz6
CAediting_647148	chr8_79976673_-	SINE	Alu	AluSz6
CAediting_647149	chr8_79977722_-	SINE	Alu	AluSx1
CAediting_647150	chr8_79977731_-	SINE	Alu	AluSx1
CAediting_647151	chr8_79977754_-	SINE	Alu	AluSx1
CAediting_647152	chr8_79977755_-	SINE	Alu	AluSx1
CAediting_647153	chr8_79977757_-	SINE	Alu	AluSx1
CAediting_647154	chr8_80028772_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for MRPS28

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000147586.8.MRPS28.

Correlation between RNA A-to-I editing and PSI for ENSG00000147586.8.MRPS28.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MRPS28

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for MRPS28

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for MRPS28

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MRPS28

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000518271.1	protein_coding
ENST00000520946.1	protein_coding
ENST00000521434.4	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_647154	ENST00000518271.1	chr8_80028772_-	-173.10	-173.80	-173.10
CAediting_647154	ENST00000520946.1	chr8_80028772_-	-128.50	-129.20	-128.50
CAediting_647154	ENST00000521434.4	chr8_80028772_-	-176.50	-176.50	-176.50

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Relation with ADAR for MRPS28

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for MRPS28

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for MRPS28

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for MRPS28

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for MRPS28

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
MRPS28	C0006142	Malignant neoplasm of breast	1	CTD_human
MRPS28	C0678222	Breast Carcinoma	1	CTD_human
MRPS28	C1257931	Mammary Neoplasms, Human	1	CTD_human
MRPS28	C1458155	Mammary Neoplasms	1	CTD_human
MRPS28	C4704874	Mammary Carcinoma, Human	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene