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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: GRIA3 (CAeditome ID:2892) |
Gene summary for GRIA3 |
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Gene information | Gene symbol | GRIA3 | Gene ID | 2892 |
Gene name | glutamate ionotropic receptor AMPA type subunit 3 | |
Synonyms | GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94|MRXSW | |
Cytomap | Xq25 | |
Type of gene | protein-coding | |
Description | glutamate receptor 3AMPA-selective glutamate receptor 3dJ1171F9.1gluR-3glutamate receptor Cglutamate receptor subunit 3glutamate receptor, ionotrophic, AMPA 3glutamate receptor, ionotropic, AMPA 3 | |
Modification date | 20210524 | |
UniProtAcc | P42263 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
GRIA3 | GO:0004971 | Glutamate receptor 3 | 21172611 |
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RNA A-to-I events for GRIA3 |
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CAediting_1522052(123465111, +), CAediting_1522053(123465147, +), CAediting_1522054(123466293, +), CAediting_1522055(123466353, +), CAediting_1522056(123466355, +), CAediting_1522057(123466371, +), CAediting_1522058(123466373, +), CAediting_1522059(123482476, +), CAediting_1522060(123482480, +), CAediting_1522061(123483612, +), CAediting_1522062(123483745, +), CAediting_1522063(123483882, +), CAediting_1522064(123483914, +), CAediting_1522065(123484500, +), CAediting_1522066(123484507, +), CAediting_1522067(123484517, +), CAediting_1522068(123484545, +), CAediting_1522069(123484550, +), CAediting_1522070(123484581, +), CAediting_1522071(123484606, +), CAediting_1522072(123484610, +), CAediting_1522073(123484620, +), CAediting_1522074(123484622, +), CAediting_1522075(123484626, +), CAediting_1522076(123484666, +), CAediting_1522077(123484672, +), CAediting_1522078(123484683, +), CAediting_1522079(123484757, +), |
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RNA editing positional annotations for GRIA3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1522052 | chrX_123465111_+ | exonic |
CAediting_1522053 | chrX_123465147_+ | ncRNA_exonic |
CAediting_1522054 | chrX_123466293_+ | intronic |
CAediting_1522055 | chrX_123466353_+ | intronic |
CAediting_1522056 | chrX_123466355_+ | intronic |
CAediting_1522057 | chrX_123466371_+ | intronic |
CAediting_1522058 | chrX_123466373_+ | intronic |
CAediting_1522059 | chrX_123482476_+ | intronic |
CAediting_1522060 | chrX_123482480_+ | intronic |
CAediting_1522061 | chrX_123483612_+ | ncRNA_intronic |
CAediting_1522062 | chrX_123483745_+ | ncRNA_intronic |
CAediting_1522063 | chrX_123483882_+ | ncRNA_intronic |
CAediting_1522064 | chrX_123483914_+ | ncRNA_intronic |
CAediting_1522065 | chrX_123484500_+ | ncRNA_intronic |
CAediting_1522066 | chrX_123484507_+ | ncRNA_intronic |
CAediting_1522067 | chrX_123484517_+ | ncRNA_intronic |
CAediting_1522068 | chrX_123484545_+ | ncRNA_intronic |
CAediting_1522069 | chrX_123484550_+ | ncRNA_intronic |
CAediting_1522070 | chrX_123484581_+ | ncRNA_intronic |
CAediting_1522071 | chrX_123484606_+ | ncRNA_intronic |
CAediting_1522072 | chrX_123484610_+ | ncRNA_intronic |
CAediting_1522073 | chrX_123484620_+ | ncRNA_intronic |
CAediting_1522074 | chrX_123484622_+ | ncRNA_intronic |
CAediting_1522075 | chrX_123484626_+ | ncRNA_intronic |
CAediting_1522076 | chrX_123484666_+ | ncRNA_intronic |
CAediting_1522077 | chrX_123484672_+ | ncRNA_intronic |
CAediting_1522078 | chrX_123484683_+ | ncRNA_intronic |
CAediting_1522079 | chrX_123484757_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1522062 | chrX_123483745_+ | SINE | Alu | AluY |
CAediting_1522063 | chrX_123483882_+ | SINE | Alu | AluY |
CAediting_1522064 | chrX_123483914_+ | SINE | Alu | AluY |
CAediting_1522065 | chrX_123484500_+ | SINE | Alu | AluSz |
CAediting_1522066 | chrX_123484507_+ | SINE | Alu | AluSz |
CAediting_1522067 | chrX_123484517_+ | SINE | Alu | AluSz |
CAediting_1522068 | chrX_123484545_+ | SINE | Alu | AluSz |
CAediting_1522069 | chrX_123484550_+ | SINE | Alu | AluSz |
CAediting_1522070 | chrX_123484581_+ | SINE | Alu | AluSz |
CAediting_1522071 | chrX_123484606_+ | SINE | Alu | AluSz |
CAediting_1522072 | chrX_123484610_+ | SINE | Alu | AluSz |
CAediting_1522073 | chrX_123484620_+ | SINE | Alu | AluSz |
CAediting_1522074 | chrX_123484622_+ | SINE | Alu | AluSz |
CAediting_1522075 | chrX_123484626_+ | SINE | Alu | AluSz |
CAediting_1522076 | chrX_123484666_+ | SINE | Alu | AluSz |
CAediting_1522077 | chrX_123484672_+ | SINE | Alu | AluSz |
CAediting_1522078 | chrX_123484683_+ | SINE | Alu | AluSz |
CAediting_1522079 | chrX_123484757_+ | SINE | Alu | AluSz |
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RNA A-to-I editing events in the alternative splicing sites for GRIA3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GRIA3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for GRIA3 |
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The effects of the RNA editing to the miRNA binding sites for GRIA3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688080 | chr9_63819626_+ | ENSG00000125675.16 | ENST00000616590 | hsa-miR-4477b | 123204675 | 123204682 | 8mer-1a | 123204662 | 123204682 | 150 | -11 |
CAediting_688080 | chr9_63819626_+ | ENSG00000125675.16 | ENST00000611689 | hsa-miR-4477b | 123204675 | 123204682 | 8mer-1a | 123204662 | 123204682 | 150 | -11 |
CAediting_580943 | chr7_100356700_+ | ENSG00000125675.16 | ENST00000620443 | hsa-miR-6840-3p | 123489535 | 123489541 | 7mer-m8 | 123489520 | 123489542 | 147 | -21.23 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000125675.16 | ENST00000620581 | hsa-miR-548aa | 123482880 | 123482886 | 7mer-m8 | 123482863 | 123482887 | 158 | -17.32 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_396018 | chr5_1062918_- | ENSG00000125675.16 | ENST00000620443 | hsa-miR-4635 | 123488765 | 123488771 | 7mer-m8 | 123488753 | 123488772 | 146 | -19.31 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000125675.16 | ENST00000620443 | hsa-miR-548aa | 123489406 | 123489412 | 7mer-m8 | 123489386 | 123489413 | 142 | -7.57 |
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The effects of the RNA editing to the stability of the RNA structures for GRIA3 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for GRIA3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LGG | CAediting_1522052 | chrX_123465111_+ | 3.65502049485671e-08 | 0.240606178898919 | 1.62910378533244e-55 | 0.619637846497799 | 0.0316290005671512 | 0.0950865422361206 |
GBM | CAediting_1522052 | chrX_123465111_+ | 0.00305291356579975 | 0.23954398559788 | 0.0228323757259526 | 0.185170608285715 | . | . |
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Relation with cancer stages for GRIA3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for GRIA3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for GRIA3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
GRIA3 | P42263 | DB00898 | Ethanol | Glutamate receptor 3 | SmallMoleculeDrug | approved |
GRIA3 | P42263 | DB13146 | Fluciclovine (18F) | Glutamate receptor 3 | SmallMoleculeDrug | approved |
GRIA3 | P42263 | DB14507 | Lithium citrate | Glutamate receptor 3 | SmallMoleculeDrug | approved |
GRIA3 | P42263 | DB14509 | Lithium carbonate | Glutamate receptor 3 | SmallMoleculeDrug | approved |
GRIA3 | P42263 | DB00237 | Butabarbital | Glutamate receptor 3 | SmallMoleculeDrug | approved|illicit |
GRIA3 | P42263 | DB00142 | Glutamic acid | Glutamate receptor 3 | SmallMoleculeDrug | approved|nutraceutical |
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RelatedDiseases for GRIA3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
GRIA3 | C0796250 | PARTINGTON X-LINKED MENTAL RETARDATION SYNDROME | 6 | CLINGEN |
GRIA3 | C0005586 | Bipolar Disorder | 5 | PSYGENET |
GRIA3 | C0011581 | Depressive disorder | 3 | PSYGENET |
GRIA3 | C0011570 | Mental Depression | 2 | PSYGENET |
GRIA3 | C0036341 | Schizophrenia | 2 | PSYGENET |
GRIA3 | C0016722 | Frigidity | 1 | CTD_human |
GRIA3 | C0020594 | Hypoactive Sexual Desire Disorder | 1 | CTD_human |
GRIA3 | C0029261 | Orgasmic Disorder | 1 | CTD_human |
GRIA3 | C0033953 | Psychosexual Disorders | 1 | CTD_human |
GRIA3 | C0036902 | Sexual Arousal Disorder | 1 | CTD_human |
GRIA3 | C1862939 | AMYOTROPHIC LATERAL SCLEROSIS 1 | 1 | CTD_human |
GRIA3 | C1862941 | Amyotrophic Lateral Sclerosis, Sporadic | 1 | CTD_human |
GRIA3 | C2678051 | MENTAL RETARDATION, X-LINKED 94 (disorder) | 1 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
GRIA3 | C4551993 | Amyotrophic Lateral Sclerosis, Familial | 1 | CTD_human |