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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: GRB7 (CAeditome ID:2886) |
Gene summary for GRB7 |
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Gene information | Gene symbol | GRB7 | Gene ID | 2886 |
Gene name | growth factor receptor bound protein 7 | |
Synonyms | - | |
Cytomap | 17q12 | |
Type of gene | protein-coding | |
Description | growth factor receptor-bound protein 7B47GRB7 adapter proteinepidermal growth factor receptor GRB-7 | |
Modification date | 20210522 | |
UniProtAcc | Q14451 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
GRB7 | GO:0019901 | Growth factor receptor-bound protein 7 | 12021278 |
GRB7 | GO:0035091 | Growth factor receptor-bound protein 7 | 12021278 |
GRB7 | GO:0030335 | Growth factor receptor-bound protein 7 | 10893408 |
GRB7 | GO:0030335 | Growth factor receptor-bound protein 7 | 12021278 |
GRB7 | GO:0005829 | Growth factor receptor-bound protein 7 | 10893408 |
GRB7 | GO:0005829 | Growth factor receptor-bound protein 7 | 12021278 |
GRB7 | GO:0005925 | Growth factor receptor-bound protein 7 | 10893408 |
GRB7 | GO:0005925 | Growth factor receptor-bound protein 7 | 12021278 |
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RNA A-to-I events for GRB7 |
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CAediting_1191609(39740599, +), CAediting_1191610(39741764, +), CAediting_1191611(39741765, +), CAediting_1191612(39741889, +), CAediting_1191613(39741890, +), CAediting_1191614(39743717, +), CAediting_1191615(39743720, +), CAediting_1191616(39743782, +), CAediting_1191617(39743921, +), CAediting_1191618(39746374, +), CAediting_1191619(39746383, +), CAediting_1191620(39746384, +), CAediting_1191621(39746393, +), CAediting_1191622(39746402, +), CAediting_1191623(39746430, +), CAediting_1191624(39746431, +), CAediting_1191625(39746435, +), CAediting_1191626(39746528, +), CAediting_1191627(39746543, +), CAediting_1191628(39746631, +), CAediting_1191629(39746632, +), CAediting_1191630(39746633, +), |
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RNA editing positional annotations for GRB7 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1191609 | chr17_39740599_+ | ncRNA_intronic |
CAediting_1191610 | chr17_39741764_+ | ncRNA_intronic |
CAediting_1191611 | chr17_39741765_+ | ncRNA_intronic |
CAediting_1191612 | chr17_39741889_+ | ncRNA_intronic |
CAediting_1191613 | chr17_39741890_+ | ncRNA_intronic |
CAediting_1191614 | chr17_39743717_+ | ncRNA_intronic |
CAediting_1191615 | chr17_39743720_+ | ncRNA_intronic |
CAediting_1191616 | chr17_39743782_+ | ncRNA_intronic |
CAediting_1191617 | chr17_39743921_+ | ncRNA_intronic |
CAediting_1191618 | chr17_39746374_+ | intronic |
CAediting_1191619 | chr17_39746383_+ | intronic |
CAediting_1191620 | chr17_39746384_+ | intronic |
CAediting_1191621 | chr17_39746393_+ | intronic |
CAediting_1191622 | chr17_39746402_+ | intronic |
CAediting_1191623 | chr17_39746430_+ | intronic |
CAediting_1191624 | chr17_39746431_+ | intronic |
CAediting_1191625 | chr17_39746435_+ | intronic |
CAediting_1191626 | chr17_39746528_+ | intronic |
CAediting_1191627 | chr17_39746543_+ | intronic |
CAediting_1191628 | chr17_39746631_+ | intronic |
CAediting_1191629 | chr17_39746632_+ | intronic |
CAediting_1191630 | chr17_39746633_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1191610 | chr17_39741764_+ | SINE | Alu | AluSx1 |
CAediting_1191611 | chr17_39741765_+ | SINE | Alu | AluSx1 |
CAediting_1191612 | chr17_39741889_+ | SINE | Alu | AluSx1 |
CAediting_1191613 | chr17_39741890_+ | SINE | Alu | AluSx1 |
CAediting_1191614 | chr17_39743717_+ | SINE | Alu | AluJb |
CAediting_1191615 | chr17_39743720_+ | SINE | Alu | AluJb |
CAediting_1191616 | chr17_39743782_+ | SINE | Alu | AluJb |
CAediting_1191617 | chr17_39743921_+ | SINE | Alu | AluJb |
CAediting_1191618 | chr17_39746374_+ | SINE | Alu | AluJr |
CAediting_1191619 | chr17_39746383_+ | SINE | Alu | AluJr |
CAediting_1191620 | chr17_39746384_+ | SINE | Alu | AluJr |
CAediting_1191621 | chr17_39746393_+ | SINE | Alu | AluJr |
CAediting_1191622 | chr17_39746402_+ | SINE | Alu | AluJr |
CAediting_1191623 | chr17_39746430_+ | SINE | Alu | AluJr |
CAediting_1191624 | chr17_39746431_+ | SINE | Alu | AluJr |
CAediting_1191625 | chr17_39746435_+ | SINE | Alu | AluJr |
CAediting_1191626 | chr17_39746528_+ | SINE | Alu | AluJr |
CAediting_1191627 | chr17_39746543_+ | SINE | Alu | AluJr |
CAediting_1191628 | chr17_39746631_+ | SINE | Alu | AluJr |
CAediting_1191629 | chr17_39746632_+ | SINE | Alu | AluJr |
CAediting_1191630 | chr17_39746633_+ | SINE | Alu | AluJr |
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RNA A-to-I editing events in the alternative splicing sites for GRB7 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_1191619 | chr17_39746383_+ | 39746383:39746391 | 5SS | 3+0i | AAGGTGGGA | 6.03 | GAGGTGGGA | 4.3 |
IR | CAediting_1191619 | chr17_39746383_+ | 39746383:39746391 | 5SS | 3+0i | AAGGTGGGA | 6.03 | GAGGTGGGA | 4.3 |
ES | CAediting_1191620 | chr17_39746384_+ | 39746383:39746391 | 5SS | 2+0i | AAGGTGGGA | 6.03 | AGGGTGGGA | 2.36 |
IR | CAediting_1191620 | chr17_39746384_+ | 39746383:39746391 | 5SS | 2+0i | AAGGTGGGA | 6.03 | AGGGTGGGA | 2.36 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GRB7 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for GRB7 |
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The effects of the RNA editing to the miRNA binding sites for GRB7 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688080 | chr9_63819626_+ | ENSG00000141738.12 | ENST00000394211 | hsa-miR-4477b | 39747095 | 39747101 | 7mer-m8 | 39747081 | 39747102 | 145 | -8.65 |
CAediting_688080 | chr9_63819626_+ | ENSG00000141738.12 | ENST00000445327 | hsa-miR-4477b | 39747095 | 39747101 | 7mer-m8 | 39747081 | 39747102 | 145 | -8.65 |
CAediting_396018 | chr5_1062918_- | ENSG00000141738.12 | ENST00000394211 | hsa-miR-4635 | 39747096 | 39747102 | 7mer-m8 | 39747083 | 39747103 | 144 | -14.95 |
CAediting_524911 | chr7_5495852_- | ENSG00000141738.12 | ENST00000394211 | hsa-miR-589-3p | 39747240 | 39747246 | 7mer-m8 | 39747222 | 39747247 | 151 | -15.47 |
CAediting_396018 | chr5_1062918_- | ENSG00000141738.12 | ENST00000445327 | hsa-miR-4635 | 39747096 | 39747102 | 7mer-m8 | 39747083 | 39747103 | 144 | -14.95 |
CAediting_524911 | chr7_5495852_- | ENSG00000141738.12 | ENST00000445327 | hsa-miR-589-3p | 39747240 | 39747246 | 7mer-m8 | 39747222 | 39747247 | 151 | -15.47 |
CAediting_468389 | chr6_31355314_- | ENSG00000141738.12 | ENST00000394211 | hsa-miR-6891-5p | 39747094 | 39747100 | 7mer-1a | 39747082 | 39747100 | 153 | -31.28 |
CAediting_468389 | chr6_31355314_- | ENSG00000141738.12 | ENST00000445327 | hsa-miR-6891-5p | 39747094 | 39747100 | 7mer-1a | 39747082 | 39747100 | 153 | -31.28 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for GRB7 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for GRB7 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_1191609 | chr17_39740599_+ | 5.47060445884856e-05 | 0.459862226716159 | . | . | . | . |
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Relation with cancer stages for GRB7 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for GRB7 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for GRB7 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GRB7 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
GRB7 | C0006142 | Malignant neoplasm of breast | 2 | CTD_human |
GRB7 | C0678222 | Breast Carcinoma | 2 | CTD_human |
GRB7 | C1257931 | Mammary Neoplasms, Human | 2 | CTD_human |
GRB7 | C1458155 | Mammary Neoplasms | 2 | CTD_human |
GRB7 | C4704874 | Mammary Carcinoma, Human | 2 | CTD_human |
GRB7 | C0001418 | Adenocarcinoma | 1 | CTD_human |
GRB7 | C0007134 | Renal Cell Carcinoma | 1 | CTD_human |
GRB7 | C0024121 | Lung Neoplasms | 1 | CTD_human |
GRB7 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
GRB7 | C0205641 | Adenocarcinoma, Basal Cell | 1 | CTD_human |
GRB7 | C0205642 | Adenocarcinoma, Oxyphilic | 1 | CTD_human |
GRB7 | C0205643 | Carcinoma, Cribriform | 1 | CTD_human |
GRB7 | C0205644 | Carcinoma, Granular Cell | 1 | CTD_human |
GRB7 | C0205645 | Adenocarcinoma, Tubular | 1 | CTD_human |
GRB7 | C0242379 | Malignant neoplasm of lung | 1 | CTD_human |
GRB7 | C0279702 | Conventional (Clear Cell) Renal Cell Carcinoma | 1 | CTD_human |
GRB7 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
GRB7 | C1266042 | Chromophobe Renal Cell Carcinoma | 1 | CTD_human |
GRB7 | C1266043 | Sarcomatoid Renal Cell Carcinoma | 1 | CTD_human |
GRB7 | C1266044 | Collecting Duct Carcinoma of the Kidney | 1 | CTD_human |
GRB7 | C1306837 | Papillary Renal Cell Carcinoma | 1 | CTD_human |