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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: IGLV6-57 (CAeditome ID:28778) |
Gene summary for IGLV6-57 |
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Gene information | Gene symbol | IGLV6-57 | Gene ID | 28778 |
Gene name | immunoglobulin lambda variable 6-57 | |
Synonyms | IGLV657|V1-22 | |
Cytomap | 22q11.22 | |
Type of gene | other | |
Description | Ig lambda chain V-VI region ARamyloid lambda 6 light chain variable region PIPamyloid lambda 6 light chain variable region SAR | |
Modification date | 20210518 | |
UniProtAcc | P01721 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for IGLV6-57 |
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CAediting_1463960(22195981, +), CAediting_1463961(22195987, +), CAediting_1463962(22196084, +), CAediting_1463963(22196093, +), CAediting_1463964(22196185, +), CAediting_1463965(22196224, +), CAediting_1463966(22196237, +), CAediting_1463967(22196269, +), |
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RNA editing positional annotations for IGLV6-57 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1463960 | chr22_22195981_+ | exonic |
CAediting_1463961 | chr22_22195987_+ | exonic |
CAediting_1463962 | chr22_22196084_+ | exonic |
CAediting_1463963 | chr22_22196093_+ | exonic |
CAediting_1463964 | chr22_22196185_+ | exonic |
CAediting_1463965 | chr22_22196224_+ | exonic |
CAediting_1463966 | chr22_22196237_+ | exonic |
CAediting_1463967 | chr22_22196269_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for IGLV6-57 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for IGLV6-57 |
![]() * The grey color means N/A. |
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KIRC.CAediting_1463967.ENSG00000211640.IGLV6-57.png ![]() |
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Protein coding region RNA A-to-I editings for IGLV6-57 |
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The effects of the RNA editing to the miRNA binding sites for IGLV6-57 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for IGLV6-57 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for IGLV6-57 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_1463961 | chr22_22195987_+ | . | . | 0.0330703166357635 | 0.184256930720085 | . | . |
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Relation with cancer stages for IGLV6-57 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
HNSC | pathologic_stage | CAediting_1463961 | chr22_22195987_+ | 0.040095516308681 | -0.280277704973536 |
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Relation with survival for IGLV6-57 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
LUSC | CAediting_1463967 | chr22_22196269_+ | 0.0201319881919645 | 0.0480764 | 5.23076 |
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RelatedDrugs for IGLV6-57 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for IGLV6-57 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |