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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: DPH3 (CAeditome ID:285381) |
Gene summary for DPH3 |
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Gene information | Gene symbol | DPH3 | Gene ID | 285381 |
Gene name | diphthamide biosynthesis 3 | |
Synonyms | DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 | |
Cytomap | 3p25.1 | |
Type of gene | protein-coding | |
Description | DPH3 homologCSL-type zinc finger-containing protein 2DPH3 homolog (KTI11, S. cerevisiae)DPH3, KTI11 homologDPH3A, KTI11 homolog ADel-GEF interacting proteindeafness locus putative guanine nucleotide exchange factor interacting protein 1delGEF-inter | |
Modification date | 20210518 | |
UniProtAcc | Q96FX2 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
DPH3 | GO:0050709 | DPH3 homolog | 14980502 |
DPH3 | GO:0051099 | DPH3 homolog | 14980502 |
DPH3 | GO:0005634 | DPH3 homolog | 14980502 |
DPH3 | GO:0005654 | DPH3 homolog | 0000052 |
DPH3 | GO:0005737 | DPH3 homolog | 14980502 |
DPH3 | GO:0005829 | DPH3 homolog | 0000052 |
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RNA A-to-I events for DPH3 |
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CAediting_261525(16258490, -), CAediting_261526(16258494, -), CAediting_261527(16258576, -), CAediting_261528(16258612, -), CAediting_261529(16258680, -), CAediting_261530(16258685, -), CAediting_261531(16258699, -), CAediting_261532(16260745, -), CAediting_261533(16260808, -), |
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RNA editing positional annotations for DPH3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_261525 | chr3_16258490_- | UTR3 |
CAediting_261526 | chr3_16258494_- | UTR3 |
CAediting_261527 | chr3_16258576_- | UTR3 |
CAediting_261528 | chr3_16258612_- | UTR3 |
CAediting_261529 | chr3_16258680_- | UTR3 |
CAediting_261530 | chr3_16258685_- | UTR3 |
CAediting_261531 | chr3_16258699_- | UTR3 |
CAediting_261532 | chr3_16260745_- | ncRNA_exonic |
CAediting_261533 | chr3_16260808_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_261525 | chr3_16258490_- | SINE | Alu | AluJr |
CAediting_261526 | chr3_16258494_- | SINE | Alu | AluJr |
CAediting_261527 | chr3_16258576_- | SINE | Alu | AluJr |
CAediting_261528 | chr3_16258612_- | SINE | Alu | AluJr |
CAediting_261529 | chr3_16258680_- | SINE | Alu | AluJr |
CAediting_261530 | chr3_16258685_- | SINE | Alu | AluJr |
CAediting_261531 | chr3_16258699_- | SINE | Alu | AluJr |
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RNA A-to-I editing events in the alternative splicing sites for DPH3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for DPH3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for DPH3 |
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The effects of the RNA editing to the miRNA binding sites for DPH3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-3059-5p | 16258488 | 16258494 | 7mer-m8 | 16258487 | 16258510 | 148.00 | -16.57 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-516a-3p | 16258485 | 16258492 | 8mer-1a | 16258485 | 16258502 | 146.00 | -14.76 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-516a-3p | 16258485 | 16258492 | 8mer-1a | 16258485 | 16258502 | 146.00 | -14.76 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-516b-3p | 16258485 | 16258492 | 8mer-1a | 16258485 | 16258502 | 146.00 | -14.76 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-516b-3p | 16258485 | 16258492 | 8mer-1a | 16258485 | 16258502 | 146.00 | -14.76 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6881-3p | 16258488 | 16258495 | 8mer-1a | 16258488 | 16258509 | 148.00 | -9.83 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-7162-5p | 16258485 | 16258492 | 8mer-1a | 16258485 | 16258502 | 148.00 | -14.76 |
CAediting_261528 | chr3_16258612_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-3620-3p | 16258608 | 16258614 | 7mer-m8 | 16258607 | 16258628 | 145.00 | -16.99 |
CAediting_261530 | chr3_16258685_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-3189-5p | 16258682 | 16258687 | 6mer | 16258681 | 16258707 | 140.00 | -24.44 |
CAediting_261530 | chr3_16258685_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-328-3p | 16258680 | 16258685 | 6mer | 16258679 | 16258700 | 144.00 | -25.11 |
CAediting_261530 | chr3_16258685_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-4758-3p | 16258682 | 16258688 | 7mer-m8 | 16258681 | 16258701 | 153.00 | -20.29 |
CAediting_261530 | chr3_16258685_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-874-5p | 16258680 | 16258687 | 8mer-1a | 16258680 | 16258702 | 146.00 | -21.16 |
CAediting_261527 | chr3_16258576_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-331-3p | 16258575 | 16258581 | 7mer-m8 | 16258574 | 16258594 | 162.00 | -29.04 |
CAediting_261527 | chr3_16258576_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-4292 | 16258576 | 16258582 | 7mer-m8 | 16258575 | 16258592 | 150.00 | -26.60 |
CAediting_261527 | chr3_16258576_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6771-3p | 16258572 | 16258578 | 7mer-m8 | 16258571 | 16258591 | 151.00 | -26.95 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_261527 | chr3_16258576_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-1343-3p | 16258576 | 16258582 | 7mer-m8 | 16258575 | 16258597 | 154 | -26.05 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-3160-5p | 16258485 | 16258492 | 8mer-1a | 16258485 | 16258506 | 140 | -9.11 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-3160-5p | 16258485 | 16258492 | 8mer-1a | 16258485 | 16258506 | 140 | -9.11 |
CAediting_261529 | chr3_16258680_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-3176 | 16258679 | 16258685 | 7mer-m8 | 16258678 | 16258696 | 141 | -15.38 |
CAediting_261528 | chr3_16258612_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-3200-3p | 16258609 | 16258615 | 7mer-m8 | 16258608 | 16258627 | 143 | -15.16 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-4753-3p | 16258489 | 16258496 | 8mer-1a | 16258489 | 16258513 | 154 | -11.88 |
CAediting_261526 | chr3_16258494_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-4753-3p | 16258489 | 16258496 | 8mer-1a | 16258489 | 16258513 | 154 | -11.88 |
CAediting_261531 | chr3_16258699_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-660-3p | 16258693 | 16258700 | 8mer-1a | 16258693 | 16258713 | 143 | -15.63 |
CAediting_261530 | chr3_16258685_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6744-3p | 16258680 | 16258686 | 7mer-1a | 16258680 | 16258703 | 148 | -27.52 |
CAediting_261531 | chr3_16258699_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6747-3p | 16258696 | 16258703 | 8mer-1a | 16258696 | 16258716 | 145 | -19.88 |
CAediting_261527 | chr3_16258576_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6783-3p | 16258576 | 16258582 | 7mer-m8 | 16258575 | 16258596 | 147 | -21.08 |
CAediting_261525 | chr3_16258490_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6809-3p | 16258488 | 16258495 | 8mer-1a | 16258488 | 16258507 | 142 | -6.29 |
CAediting_261526 | chr3_16258494_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6809-3p | 16258488 | 16258495 | 8mer-1a | 16258488 | 16258507 | 142 | -6.29 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-624-3p | 16258640 | 16258646 | 7mer-m8 | 16258639 | 16258659 | 156 | -12.36 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000154813.8 | ENST00000383775 | hsa-miR-548aa | 16260482 | 16260489 | 8mer-1a | 16260482 | 16260506 | 140 | -13.08 |
CAediting_1351755 | chr19_40282625_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-641 | 16258369 | 16258375 | 7mer-m8 | 16258368 | 16258392 | 159 | -20.71 |
CAediting_1351755 | chr19_40282625_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-641 | 16260141 | 16260147 | 7mer-m8 | 16260140 | 16260161 | 146 | -16.06 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_442554 | chr5_154685830_+ | ENSG00000154813.8 | ENST00000383775 | hsa-miR-1303 | 16258269 | 16258275 | 7mer-m8 | 16258268 | 16258290 | 141 | -10.33 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000154813.8 | ENST00000383775 | hsa-miR-548aa | 16259084 | 16259090 | 7mer-m8 | 16259083 | 16259109 | 150 | -9.24 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000154813.8 | ENST00000383775 | hsa-miR-548aa | 16259084 | 16259090 | 7mer-m8 | 16259083 | 16259109 | 150 | -9.24 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000154813.8 | ENST00000383775 | hsa-miR-548aa | 16259084 | 16259090 | 7mer-m8 | 16259083 | 16259109 | 150 | -9.24 |
CAediting_524911 | chr7_5495852_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-589-3p | 16260654 | 16260660 | 7mer-m8 | 16260653 | 16260676 | 140 | -10.93 |
CAediting_524911 | chr7_5495852_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-589-3p | 16259425 | 16259431 | 7mer-m8 | 16259424 | 16259445 | 148 | -13.13 |
CAediting_524911 | chr7_5495852_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-589-3p | 16260225 | 16260231 | 7mer-m8 | 16260224 | 16260245 | 152 | -15.38 |
CAediting_1399425 | chr20_1392958_- | ENSG00000154813.8 | ENST00000383775 | hsa-miR-6869-5p | 16258712 | 16258718 | 7mer-m8 | 16258711 | 16258733 | 146 | -19.73 |
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The effects of the RNA editing to the stability of the RNA structures for DPH3 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_261525 | ENST00000383775.4 | chr3_16258490_- | -815.20 | -813.70 | -823.00 |
CAediting_261526 | ENST00000383775.4 | chr3_16258494_- | -816.30 | -813.70 | -823.00 |
CAediting_261527 | ENST00000383775.4 | chr3_16258576_- | -814.20 | -813.70 | -823.00 |
CAediting_261528 | ENST00000383775.4 | chr3_16258612_- | -816.60 | -813.70 | -823.00 |
CAediting_261529 | ENST00000383775.4 | chr3_16258680_- | -814.70 | -813.70 | -823.00 |
CAediting_261530 | ENST00000383775.4 | chr3_16258685_- | -814.70 | -813.70 | -823.00 |
CAediting_261531 | ENST00000383775.4 | chr3_16258699_- | -813.10 | -813.70 | -823.00 |
CAediting_261532 | ENST00000383775.4 | chr3_16260745_- | -813.70 | -813.70 | -823.00 |
CAediting_261533 | ENST00000383775.4 | chr3_16260808_- | -817.70 | -813.70 | -823.00 |
CAediting_261525 | ENST00000488423.1 | chr3_16258490_- | -837.60 | -835.60 | -845.70 |
CAediting_261526 | ENST00000488423.1 | chr3_16258494_- | -838.20 | -835.60 | -845.70 |
CAediting_261527 | ENST00000488423.1 | chr3_16258576_- | -836.50 | -835.60 | -845.70 |
CAediting_261528 | ENST00000488423.1 | chr3_16258612_- | -839.30 | -835.60 | -845.70 |
CAediting_261529 | ENST00000488423.1 | chr3_16258680_- | -836.60 | -835.60 | -845.70 |
CAediting_261530 | ENST00000488423.1 | chr3_16258685_- | -836.60 | -835.60 | -845.70 |
CAediting_261531 | ENST00000488423.1 | chr3_16258699_- | -835.80 | -835.60 | -845.70 |
CAediting_261532 | ENST00000488423.1 | chr3_16260745_- | -835.60 | -835.60 | -845.70 |
CAediting_261533 | ENST00000488423.1 | chr3_16260808_- | -840.10 | -835.60 | -845.70 |
CAediting_261532 | ENST00000285082.7 | chr3_16260745_- | -293.90 | -293.90 | -298.60 |
CAediting_261533 | ENST00000285082.7 | chr3_16260808_- | -298.60 | -293.90 | -298.60 |
CAediting_261532 | ENST00000462982.1 | chr3_16260745_- | -225.60 | -225.60 | -230.30 |
CAediting_261533 | ENST00000462982.1 | chr3_16260808_- | -230.30 | -225.60 | -230.30 |
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Relation with ADAR for DPH3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for DPH3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for DPH3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for DPH3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DPH3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |