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Editing gene: CCDC66 (CAeditome ID:285331)

Gene summary for CCDC66

Gene summary

Gene information	Gene symbol	CCDC66
	Gene ID	285331
	Gene name	coiled-coil domain containing 66
	Synonyms	-
	Cytomap	3p14.3
	Type of gene	protein-coding
	Description	coiled-coil domain-containing protein 66
	Modification date	20210518
	UniProtAcc	A2RUB6
	Context	- 33407514(Circ-CCDC66 upregulates REXO1 expression to aggravate cervical cancer progression via restraining miR-452-5p)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CCDC66	GO:0035869	Coiled-coil domain-containing protein 66	28235840
CCDC66	GO:0008017	Coiled-coil domain-containing protein 66	28235840
CCDC66	GO:0001917	Coiled-coil domain-containing protein 66	19777273
CCDC66	GO:0005813	Coiled-coil domain-containing protein 66	28235840
CCDC66	GO:0005829	Coiled-coil domain-containing protein 66	0000052
CCDC66	GO:0005874	Coiled-coil domain-containing protein 66	28235840
CCDC66	GO:0005929	Coiled-coil domain-containing protein 66	28235840
CCDC66	GO:0030054	Coiled-coil domain-containing protein 66	0000052
CCDC66	GO:0034451	Coiled-coil domain-containing protein 66	0000052
CCDC66	GO:0034451	Coiled-coil domain-containing protein 66	28235840
CCDC66	GO:0036064	Coiled-coil domain-containing protein 66	28235840
CCDC66	GO:0090543	Coiled-coil domain-containing protein 66	0000052

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RNA A-to-I events for CCDC66

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000180376.15

RNA A-to-I editing events in Cancer.

CAediting_286584(56560243, +), CAediting_286585(56560263, +), CAediting_286586(56560730, +), CAediting_286587(56562166, +), CAediting_286588(56562700, +), CAediting_286589(56562703, +), CAediting_286590(56562719, +), CAediting_286591(56562738, +), CAediting_286592(56562768, +), CAediting_286593(56562778, +), CAediting_286594(56562780, +), CAediting_286595(56562856, +), CAediting_286596(56563151, +), CAediting_286597(56563214, +), CAediting_286598(56566258, +), CAediting_286599(56567746, +), CAediting_286600(56567773, +), CAediting_286601(56569082, +), CAediting_286602(56569083, +), CAediting_286603(56569099, +), CAediting_286604(56569879, +), CAediting_286605(56569890, +), CAediting_286606(56569896, +), CAediting_286607(56569904, +), CAediting_286608(56569934, +), CAediting_286609(56569939, +), CAediting_286610(56569952, +), CAediting_286611(56569961, +), CAediting_286612(56569974, +), CAediting_286613(56569996, +), CAediting_286614(56570016, +), CAediting_286615(56570019, +), CAediting_286616(56570110, +), CAediting_286617(56570112, +), CAediting_286618(56570119, +), CAediting_286619(56570126, +), CAediting_286620(56570465, +), CAediting_286621(56570473, +), CAediting_286622(56570496, +), CAediting_286623(56570505, +), CAediting_286624(56570513, +), CAediting_286625(56570519, +), CAediting_286626(56570534, +), CAediting_286627(56570535, +), CAediting_286628(56570540, +), CAediting_286629(56570545, +), CAediting_286630(56570559, +), CAediting_286631(56570564, +), CAediting_286632(56570572, +), CAediting_286633(56570573, +), CAediting_286634(56570574, +), CAediting_286635(56570579, +), CAediting_286636(56570588, +), CAediting_286637(56570589, +), CAediting_286638(56570591, +), CAediting_286639(56570593, +), CAediting_286640(56570595, +), CAediting_286641(56570596, +), CAediting_286642(56570597, +), CAediting_286643(56570598, +), CAediting_286644(56570599, +), CAediting_286645(56570627, +), CAediting_286646(56570633, +), CAediting_286647(56570637, +), CAediting_286648(56570641, +), CAediting_286649(56570654, +), CAediting_286650(56570676, +), CAediting_286651(56570689, +), CAediting_286652(56570693, +), CAediting_286653(56570698, +), CAediting_286654(56571433, +), CAediting_286655(56571482, +), CAediting_286656(56571566, +), CAediting_286657(56571904, +), CAediting_286658(56582925, +), CAediting_286659(56582956, +), CAediting_286660(56583019, +), CAediting_286661(56583088, +), CAediting_286662(56583141, +), CAediting_286663(56586841, +), CAediting_286664(56587651, +), CAediting_286665(56587656, +), CAediting_286666(56587709, +), CAediting_286667(56587722, +), CAediting_286668(56587735, +), CAediting_286669(56587826, +), CAediting_286670(56590557, +), CAediting_286671(56590609, +), CAediting_286672(56590610, +), CAediting_286673(56590612, +), CAediting_286674(56590632, +), CAediting_286675(56590638, +), CAediting_286676(56590665, +), CAediting_286677(56590674, +), CAediting_286678(56590679, +), CAediting_286679(56590697, +), CAediting_286680(56592435, +), CAediting_286681(56592438, +), CAediting_286682(56593008, +), CAediting_286683(56593011, +), CAediting_286684(56593024, +), CAediting_286685(56594551, +), CAediting_286686(56595966, +), CAediting_286687(56596015, +), CAediting_286688(56596057, +), CAediting_286689(56596199, +), CAediting_286690(56613925, +), CAediting_286691(56619067, +),

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RNA editing positional annotations for CCDC66 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_286684	chr3_56593024_+	nonsynonymous SNV	ENST00000326595.10	c.A889G	p.K297E	D	P	D
CAediting_286684	chr3_56593024_+	nonsynonymous SNV	ENST00000394672.6	c.A991G	p.K331E	D	P	D

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_286584	chr3_56560243_+	ncRNA_intronic
CAediting_286585	chr3_56560263_+	ncRNA_intronic
CAediting_286586	chr3_56560730_+	ncRNA_intronic
CAediting_286587	chr3_56562166_+	ncRNA_intronic
CAediting_286588	chr3_56562700_+	ncRNA_intronic
CAediting_286589	chr3_56562703_+	ncRNA_intronic
CAediting_286590	chr3_56562719_+	ncRNA_intronic
CAediting_286591	chr3_56562738_+	ncRNA_intronic
CAediting_286592	chr3_56562768_+	ncRNA_intronic
CAediting_286593	chr3_56562778_+	ncRNA_intronic
CAediting_286594	chr3_56562780_+	ncRNA_intronic
CAediting_286595	chr3_56562856_+	ncRNA_intronic
CAediting_286596	chr3_56563151_+	ncRNA_intronic
CAediting_286597	chr3_56563214_+	ncRNA_intronic
CAediting_286598	chr3_56566258_+	ncRNA_intronic
CAediting_286599	chr3_56567746_+	ncRNA_intronic
CAediting_286600	chr3_56567773_+	ncRNA_intronic
CAediting_286601	chr3_56569082_+	ncRNA_intronic
CAediting_286602	chr3_56569083_+	ncRNA_intronic
CAediting_286603	chr3_56569099_+	ncRNA_intronic
CAediting_286604	chr3_56569879_+	ncRNA_exonic
CAediting_286605	chr3_56569890_+	ncRNA_exonic
CAediting_286606	chr3_56569896_+	ncRNA_exonic
CAediting_286607	chr3_56569904_+	ncRNA_exonic
CAediting_286608	chr3_56569934_+	ncRNA_exonic
CAediting_286609	chr3_56569939_+	ncRNA_exonic
CAediting_286610	chr3_56569952_+	ncRNA_exonic
CAediting_286611	chr3_56569961_+	ncRNA_exonic
CAediting_286612	chr3_56569974_+	ncRNA_exonic
CAediting_286613	chr3_56569996_+	ncRNA_exonic
CAediting_286614	chr3_56570016_+	ncRNA_exonic
CAediting_286615	chr3_56570019_+	ncRNA_exonic
CAediting_286616	chr3_56570110_+	ncRNA_exonic
CAediting_286617	chr3_56570112_+	ncRNA_exonic
CAediting_286618	chr3_56570119_+	ncRNA_exonic
CAediting_286619	chr3_56570126_+	ncRNA_exonic
CAediting_286620	chr3_56570465_+	ncRNA_exonic
CAediting_286621	chr3_56570473_+	ncRNA_exonic
CAediting_286622	chr3_56570496_+	ncRNA_exonic
CAediting_286623	chr3_56570505_+	ncRNA_exonic
CAediting_286624	chr3_56570513_+	ncRNA_exonic
CAediting_286625	chr3_56570519_+	ncRNA_exonic
CAediting_286626	chr3_56570534_+	ncRNA_exonic
CAediting_286627	chr3_56570535_+	ncRNA_exonic
CAediting_286628	chr3_56570540_+	ncRNA_exonic
CAediting_286629	chr3_56570545_+	ncRNA_exonic
CAediting_286630	chr3_56570559_+	ncRNA_exonic
CAediting_286631	chr3_56570564_+	ncRNA_exonic
CAediting_286632	chr3_56570572_+	ncRNA_exonic
CAediting_286633	chr3_56570573_+	ncRNA_exonic
CAediting_286634	chr3_56570574_+	ncRNA_exonic
CAediting_286635	chr3_56570579_+	ncRNA_exonic
CAediting_286636	chr3_56570588_+	ncRNA_exonic
CAediting_286637	chr3_56570589_+	ncRNA_exonic
CAediting_286638	chr3_56570591_+	ncRNA_exonic
CAediting_286639	chr3_56570593_+	ncRNA_exonic
CAediting_286640	chr3_56570595_+	ncRNA_exonic
CAediting_286641	chr3_56570596_+	ncRNA_exonic
CAediting_286642	chr3_56570597_+	ncRNA_exonic
CAediting_286643	chr3_56570598_+	ncRNA_exonic
CAediting_286644	chr3_56570599_+	ncRNA_exonic
CAediting_286645	chr3_56570627_+	ncRNA_exonic
CAediting_286646	chr3_56570633_+	ncRNA_exonic
CAediting_286647	chr3_56570637_+	ncRNA_exonic
CAediting_286648	chr3_56570641_+	ncRNA_exonic
CAediting_286649	chr3_56570654_+	ncRNA_exonic
CAediting_286650	chr3_56570676_+	ncRNA_intronic
CAediting_286651	chr3_56570689_+	ncRNA_intronic
CAediting_286652	chr3_56570693_+	ncRNA_intronic
CAediting_286653	chr3_56570698_+	ncRNA_intronic
CAediting_286654	chr3_56571433_+	ncRNA_intronic
CAediting_286655	chr3_56571482_+	ncRNA_intronic
CAediting_286656	chr3_56571566_+	ncRNA_intronic
CAediting_286657	chr3_56571904_+	ncRNA_intronic
CAediting_286658	chr3_56582925_+	ncRNA_intronic
CAediting_286659	chr3_56582956_+	ncRNA_intronic
CAediting_286660	chr3_56583019_+	ncRNA_intronic
CAediting_286661	chr3_56583088_+	ncRNA_intronic
CAediting_286662	chr3_56583141_+	ncRNA_intronic
CAediting_286663	chr3_56586841_+	ncRNA_intronic
CAediting_286664	chr3_56587651_+	ncRNA_intronic
CAediting_286665	chr3_56587656_+	ncRNA_intronic
CAediting_286666	chr3_56587709_+	ncRNA_intronic
CAediting_286667	chr3_56587722_+	ncRNA_intronic
CAediting_286668	chr3_56587735_+	ncRNA_intronic
CAediting_286669	chr3_56587826_+	ncRNA_intronic
CAediting_286670	chr3_56590557_+	ncRNA_intronic
CAediting_286671	chr3_56590609_+	ncRNA_intronic
CAediting_286672	chr3_56590610_+	ncRNA_intronic
CAediting_286673	chr3_56590612_+	ncRNA_intronic
CAediting_286674	chr3_56590632_+	ncRNA_intronic
CAediting_286675	chr3_56590638_+	ncRNA_intronic
CAediting_286676	chr3_56590665_+	ncRNA_intronic
CAediting_286677	chr3_56590674_+	ncRNA_intronic
CAediting_286678	chr3_56590679_+	ncRNA_intronic
CAediting_286679	chr3_56590697_+	ncRNA_intronic
CAediting_286680	chr3_56592435_+	ncRNA_intronic
CAediting_286681	chr3_56592438_+	ncRNA_intronic
CAediting_286682	chr3_56593008_+	exonic
CAediting_286683	chr3_56593011_+	exonic
CAediting_286684	chr3_56593024_+	exonic
CAediting_286685	chr3_56594551_+	ncRNA_intronic
CAediting_286686	chr3_56595966_+	ncRNA_intronic
CAediting_286687	chr3_56596015_+	ncRNA_intronic
CAediting_286688	chr3_56596057_+	ncRNA_intronic
CAediting_286689	chr3_56596199_+	ncRNA_intronic
CAediting_286690	chr3_56613925_+	ncRNA_intronic
CAediting_286691	chr3_56619067_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_286584	chr3_56560243_+	SINE	Alu	AluJo
CAediting_286585	chr3_56560263_+	SINE	Alu	AluJo
CAediting_286586	chr3_56560730_+	SINE	Alu	AluSx
CAediting_286587	chr3_56562166_+	SINE	Alu	AluJo
CAediting_286588	chr3_56562700_+	SINE	Alu	AluSq
CAediting_286589	chr3_56562703_+	SINE	Alu	AluSq
CAediting_286590	chr3_56562719_+	SINE	Alu	AluSq
CAediting_286591	chr3_56562738_+	SINE	Alu	AluSq
CAediting_286592	chr3_56562768_+	SINE	Alu	AluSq
CAediting_286593	chr3_56562778_+	SINE	Alu	AluSq
CAediting_286594	chr3_56562780_+	SINE	Alu	AluSq
CAediting_286595	chr3_56562856_+	SINE	Alu	AluSq
CAediting_286596	chr3_56563151_+	SINE	Alu	AluSx1
CAediting_286597	chr3_56563214_+	SINE	Alu	AluSx1
CAediting_286598	chr3_56566258_+	SINE	Alu	AluJb
CAediting_286599	chr3_56567746_+	SINE	Alu	AluY
CAediting_286600	chr3_56567773_+	SINE	Alu	AluY
CAediting_286601	chr3_56569082_+	SINE	Alu	AluJr
CAediting_286602	chr3_56569083_+	SINE	Alu	AluJr
CAediting_286603	chr3_56569099_+	SINE	Alu	AluJr
CAediting_286604	chr3_56569879_+	SINE	Alu	AluSq2
CAediting_286605	chr3_56569890_+	SINE	Alu	AluSq2
CAediting_286606	chr3_56569896_+	SINE	Alu	AluSq2
CAediting_286607	chr3_56569904_+	SINE	Alu	AluSq2
CAediting_286608	chr3_56569934_+	SINE	Alu	AluSq2
CAediting_286609	chr3_56569939_+	SINE	Alu	AluSq2
CAediting_286610	chr3_56569952_+	SINE	Alu	AluSq2
CAediting_286611	chr3_56569961_+	SINE	Alu	AluSq2
CAediting_286612	chr3_56569974_+	SINE	Alu	AluSq2
CAediting_286613	chr3_56569996_+	SINE	Alu	AluSq2
CAediting_286614	chr3_56570016_+	SINE	Alu	AluSq2
CAediting_286615	chr3_56570019_+	SINE	Alu	AluSq2
CAediting_286616	chr3_56570110_+	SINE	Alu	AluSq2
CAediting_286617	chr3_56570112_+	SINE	Alu	AluSq2
CAediting_286618	chr3_56570119_+	SINE	Alu	AluSq2
CAediting_286619	chr3_56570126_+	SINE	Alu	AluSq2
CAediting_286620	chr3_56570465_+	SINE	MIR	MIR
CAediting_286621	chr3_56570473_+	SINE	Alu	AluSc
CAediting_286622	chr3_56570496_+	SINE	Alu	AluSc
CAediting_286623	chr3_56570505_+	SINE	Alu	AluSc
CAediting_286624	chr3_56570513_+	SINE	Alu	AluSc
CAediting_286625	chr3_56570519_+	SINE	Alu	AluSc
CAediting_286626	chr3_56570534_+	SINE	Alu	AluSc
CAediting_286627	chr3_56570535_+	SINE	Alu	AluSc
CAediting_286628	chr3_56570540_+	SINE	Alu	AluSc
CAediting_286629	chr3_56570545_+	SINE	Alu	AluSc
CAediting_286630	chr3_56570559_+	SINE	Alu	AluSc
CAediting_286631	chr3_56570564_+	SINE	Alu	AluSc
CAediting_286632	chr3_56570572_+	SINE	Alu	AluSc
CAediting_286633	chr3_56570573_+	SINE	Alu	AluSc
CAediting_286634	chr3_56570574_+	SINE	Alu	AluSc
CAediting_286635	chr3_56570579_+	SINE	Alu	AluSc
CAediting_286636	chr3_56570588_+	SINE	Alu	AluSc
CAediting_286637	chr3_56570589_+	SINE	Alu	AluSc
CAediting_286638	chr3_56570591_+	SINE	Alu	AluSc
CAediting_286639	chr3_56570593_+	SINE	Alu	AluSc
CAediting_286640	chr3_56570595_+	SINE	Alu	AluSc
CAediting_286641	chr3_56570596_+	SINE	Alu	AluSc
CAediting_286642	chr3_56570597_+	SINE	Alu	AluSc
CAediting_286643	chr3_56570598_+	SINE	Alu	AluSc
CAediting_286644	chr3_56570599_+	SINE	Alu	AluSc
CAediting_286645	chr3_56570627_+	SINE	Alu	AluSc
CAediting_286646	chr3_56570633_+	SINE	Alu	AluSc
CAediting_286647	chr3_56570637_+	SINE	Alu	AluSc
CAediting_286648	chr3_56570641_+	SINE	Alu	AluSc
CAediting_286649	chr3_56570654_+	SINE	Alu	AluSc
CAediting_286650	chr3_56570676_+	SINE	Alu	AluSc
CAediting_286651	chr3_56570689_+	SINE	Alu	AluSc
CAediting_286652	chr3_56570693_+	SINE	Alu	AluSc
CAediting_286653	chr3_56570698_+	SINE	Alu	AluSc
CAediting_286654	chr3_56571433_+	SINE	Alu	AluSq
CAediting_286655	chr3_56571482_+	SINE	Alu	AluSq
CAediting_286656	chr3_56571566_+	SINE	Alu	AluSq
CAediting_286657	chr3_56571904_+	SINE	Alu	AluJr
CAediting_286658	chr3_56582925_+	SINE	Alu	AluJb
CAediting_286659	chr3_56582956_+	SINE	Alu	AluJb
CAediting_286660	chr3_56583019_+	SINE	Alu	AluJb
CAediting_286661	chr3_56583088_+	SINE	Alu	AluJb
CAediting_286662	chr3_56583141_+	SINE	Alu	AluJb
CAediting_286663	chr3_56586841_+	SINE	Alu	AluJo
CAediting_286664	chr3_56587651_+	SINE	Alu	AluSx1
CAediting_286665	chr3_56587656_+	SINE	Alu	AluSx1
CAediting_286666	chr3_56587709_+	SINE	Alu	AluSx1
CAediting_286667	chr3_56587722_+	SINE	Alu	AluSx1
CAediting_286668	chr3_56587735_+	SINE	Alu	AluSx1
CAediting_286669	chr3_56587826_+	SINE	Alu	AluSx1
CAediting_286670	chr3_56590557_+	SINE	Alu	AluJb
CAediting_286671	chr3_56590609_+	SINE	Alu	AluJb
CAediting_286672	chr3_56590610_+	SINE	Alu	AluJb
CAediting_286673	chr3_56590612_+	SINE	Alu	AluJb
CAediting_286674	chr3_56590632_+	SINE	Alu	AluJb
CAediting_286675	chr3_56590638_+	SINE	Alu	AluJb
CAediting_286676	chr3_56590665_+	SINE	Alu	AluJb
CAediting_286677	chr3_56590674_+	SINE	Alu	AluJb
CAediting_286678	chr3_56590679_+	SINE	Alu	AluJb
CAediting_286679	chr3_56590697_+	SINE	Alu	AluJb
CAediting_286680	chr3_56592435_+	SINE	Alu	AluSz6
CAediting_286681	chr3_56592438_+	SINE	Alu	AluSz6
CAediting_286685	chr3_56594551_+	SINE	Alu	AluY
CAediting_286686	chr3_56595966_+	SINE	Alu	AluJr
CAediting_286687	chr3_56596015_+	SINE	Alu	AluJr
CAediting_286688	chr3_56596057_+	SINE	Alu	AluJr
CAediting_286689	chr3_56596199_+	SINE	Alu	AluJr
CAediting_286690	chr3_56613925_+	SINE	Alu	AluJr
CAediting_286691	chr3_56619067_+	SINE	Alu	AluSx

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RNA A-to-I editing events in the alternative splicing sites for CCDC66

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000180376.15.CCDC66.

Correlation between RNA A-to-I editing and PSI for ENSG00000180376.15.CCDC66.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CCDC66

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CCDC66

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CCDC66

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_286616	chr3_56570110_+	ENSG00000180376.15	ENST00000434467	hsa-miR-106a-3p	56570106	56570111	6mer	56570091	56570112	142.00	-22.91
CAediting_286616	chr3_56570110_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4705	56570103	56570109	7mer-m8	56570091	56570110	146.00	-10.83
CAediting_286616	chr3_56570110_+	ENSG00000180376.15	ENST00000434467	hsa-miR-509-3-5p	56570108	56570113	6mer	56570093	56570114	146.00	-18.89
CAediting_286616	chr3_56570110_+	ENSG00000180376.15	ENST00000434467	hsa-miR-509-5p	56570108	56570113	6mer	56570095	56570114	141.00	-14.69
CAediting_286616	chr3_56570110_+	ENSG00000180376.15	ENST00000434467	hsa-miR-509-5p	56570108	56570113	6mer	56570095	56570114	141.00	-14.69
CAediting_286622	chr3_56570496_+	ENSG00000180376.15	ENST00000434467	hsa-miR-513a-5p	56570490	56570496	7mer-m8	56570480	56570497	152.00	-16.24
CAediting_286622	chr3_56570496_+	ENSG00000180376.15	ENST00000434467	hsa-miR-513a-5p	56570490	56570496	7mer-m8	56570480	56570497	152.00	-16.24
CAediting_286627	chr3_56570535_+	ENSG00000180376.15	ENST00000434467	hsa-miR-10a-5p	56570531	56570537	7mer-m8	56570519	56570538	160.00	-25.04
CAediting_286627	chr3_56570535_+	ENSG00000180376.15	ENST00000434467	hsa-miR-10b-5p	56570531	56570537	7mer-m8	56570519	56570538	152.00	-20.25
CAediting_286627	chr3_56570535_+	ENSG00000180376.15	ENST00000434467	hsa-miR-146b-3p	56570530	56570536	7mer-m8	56570517	56570537	147.00	-22.27
CAediting_286627	chr3_56570535_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4679	56570528	56570534	7mer-m8	56570514	56570535	152.00	-16.55
CAediting_286627	chr3_56570535_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4679	56570528	56570534	7mer-m8	56570514	56570535	152.00	-16.55
CAediting_286627	chr3_56570535_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4725-5p	56570532	56570539	8mer-1a	56570519	56570539	145.00	-20.29
CAediting_286627	chr3_56570535_+	ENSG00000180376.15	ENST00000434467	hsa-miR-504-5p	56570532	56570539	8mer-1a	56570518	56570539	149.00	-20.71
CAediting_286630	chr3_56570559_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4435	56570556	56570563	8mer-1a	56570540	56570563	141.00	-15.29
CAediting_286630	chr3_56570559_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4435	56570556	56570563	8mer-1a	56570540	56570563	141.00	-15.29
CAediting_286634	chr3_56570574_+	ENSG00000180376.15	ENST00000434467	hsa-miR-412-3p	56570567	56570573	7mer-m8	56570552	56570574	155.00	-17.22
CAediting_286634	chr3_56570574_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4474-3p	56570572	56570578	7mer-m8	56570556	56570579	158.00	-24.66
CAediting_286634	chr3_56570574_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6754-3p	56570567	56570573	7mer-m8	56570555	56570574	142.00	-13.24
CAediting_286645	chr3_56570627_+	ENSG00000180376.15	ENST00000434467	hsa-miR-128-1-5p	56570626	56570632	7mer-1a	56570609	56570632	141.00	-27.00
CAediting_286645	chr3_56570627_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6762-5p	56570625	56570632	8mer-1a	56570611	56570632	163.00	-29.39
CAediting_286645	chr3_56570627_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6845-5p	56570625	56570632	8mer-1a	56570613	56570632	153.00	-23.02
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3187-5p	56569872	56569878	7mer-m8	56569859	56569879	154.00	-29.23
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-5189-5p	56569872	56569878	7mer-m8	56569857	56569879	158.00	-23.52
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-612	56569872	56569878	7mer-m8	56569854	56569879	154.00	-24.04
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-661	56569874	56569880	7mer-m8	56569858	56569881	147.00	-17.62
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6849-3p	56569877	56569884	8mer-1a	56569864	56569884	150.00	-16.60
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6860	56569872	56569878	7mer-m8	56569860	56569879	145.00	-18.70
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-939-3p	56569873	56569879	7mer-m8	56569860	56569880	140.00	-15.63
CAediting_286606	chr3_56569896_+	ENSG00000180376.15	ENST00000434467	hsa-miR-652-3p	56569893	56569899	7mer-m8	56569880	56569900	152.00	-17.41
CAediting_286607	chr3_56569904_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4537	56569901	56569908	8mer-1a	56569885	56569908	154.00	-23.41
CAediting_286609	chr3_56569939_+	ENSG00000180376.15	ENST00000434467	hsa-miR-1255b-2-3p	56569933	56569939	7mer-m8	56569919	56569940	140.00	-13.26
CAediting_286609	chr3_56569939_+	ENSG00000180376.15	ENST00000434467	hsa-miR-589-5p	56569937	56569943	7mer-m8	56569923	56569944	160.00	-20.78
CAediting_286611	chr3_56569961_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6840-3p	56569955	56569961	7mer-m8	56569940	56569962	155.00	-26.67
CAediting_286613	chr3_56569996_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4750-5p	56569991	56569996	6mer	56569977	56569997	140.00	-28.70
CAediting_286618	chr3_56570119_+	ENSG00000180376.15	ENST00000434467	hsa-miR-663b	56570117	56570123	7mer-m8	56570101	56570124	142.00	-24.01
CAediting_286619	chr3_56570126_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4466	56570123	56570129	7mer-m8	56570113	56570130	140.00	-20.63
CAediting_286619	chr3_56570126_+	ENSG00000180376.15	ENST00000434467	hsa-miR-675-5p	56570123	56570129	7mer-m8	56570111	56570130	153.00	-26.50
CAediting_286625	chr3_56570519_+	ENSG00000180376.15	ENST00000434467	hsa-miR-10396a-3p	56570515	56570522	8mer-1a	56570502	56570522	161.00	-31.93
CAediting_286625	chr3_56570519_+	ENSG00000180376.15	ENST00000434467	hsa-miR-10396b-3p	56570515	56570522	8mer-1a	56570501	56570522	161.00	-32.08
CAediting_286625	chr3_56570519_+	ENSG00000180376.15	ENST00000434467	hsa-miR-1913	56570517	56570523	7mer-m8	56570503	56570524	147.00	-23.19
CAediting_286625	chr3_56570519_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4707-5p	56570514	56570520	7mer-m8	56570496	56570521	144.00	-31.98
CAediting_286629	chr3_56570545_+	ENSG00000180376.15	ENST00000434467	hsa-miR-138-1-3p	56570541	56570548	8mer-1a	56570527	56570548	141.00	-14.14
CAediting_286629	chr3_56570545_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3682-5p	56570541	56570546	6mer	56570525	56570547	149.00	-20.47
CAediting_286631	chr3_56570564_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3064-5p	56570558	56570563	6mer	56570544	56570564	141.00	-18.94
CAediting_286631	chr3_56570564_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3085-3p	56570558	56570563	6mer	56570544	56570564	142.00	-18.95
CAediting_286631	chr3_56570564_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4794	56570557	56570563	7mer-m8	56570543	56570564	140.00	-13.96
CAediting_286631	chr3_56570564_+	ENSG00000180376.15	ENST00000434467	hsa-miR-5580-5p	56570558	56570565	8mer-1a	56570544	56570565	140.00	-14.22
CAediting_286631	chr3_56570564_+	ENSG00000180376.15	ENST00000434467	hsa-miR-664a-5p	56570557	56570563	7mer-m8	56570541	56570564	151.00	-21.33
CAediting_286632	chr3_56570572_+	ENSG00000180376.15	ENST00000434467	hsa-miR-218-1-3p	56570570	56570576	7mer-m8	56570556	56570577	154.00	-19.02
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-1229-3p	56570567	56570573	7mer-m8	56570553	56570574	146.00	-14.00
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6511a-3p	56570566	56570573	8mer-1a	56570552	56570573	145.00	-12.94
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6511a-3p	56570566	56570573	8mer-1a	56570552	56570573	145.00	-12.94
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6511a-3p	56570566	56570573	8mer-1a	56570552	56570573	145.00	-12.94
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6511a-3p	56570566	56570573	8mer-1a	56570552	56570573	145.00	-12.94
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6511b-3p	56570566	56570573	8mer-1a	56570551	56570573	140.00	-11.61
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6511b-3p	56570566	56570573	8mer-1a	56570551	56570573	140.00	-11.61
CAediting_286633	chr3_56570573_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6848-3p	56570570	56570576	7mer-m8	56570559	56570577	140.00	-18.34
CAediting_286635	chr3_56570579_+	ENSG00000180376.15	ENST00000434467	hsa-miR-139-3p	56570577	56570584	8mer-1a	56570557	56570584	159.00	-30.89
CAediting_286635	chr3_56570579_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6863	56570575	56570581	7mer-m8	56570560	56570582	150.00	-17.67
CAediting_286636	chr3_56570588_+	ENSG00000180376.15	ENST00000434467	hsa-miR-194-3p	56570582	56570588	7mer-1a	56570568	56570588	146.00	-17.20
CAediting_286636	chr3_56570588_+	ENSG00000180376.15	ENST00000434467	hsa-miR-205-3p	56570585	56570592	8mer-1a	56570571	56570592	170.00	-22.83
CAediting_286636	chr3_56570588_+	ENSG00000180376.15	ENST00000434467	hsa-miR-30a-3p	56570584	56570590	7mer-m8	56570567	56570591	162.00	-13.39
CAediting_286636	chr3_56570588_+	ENSG00000180376.15	ENST00000434467	hsa-miR-30d-3p	56570584	56570590	7mer-m8	56570569	56570591	158.00	-12.85
CAediting_286636	chr3_56570588_+	ENSG00000180376.15	ENST00000434467	hsa-miR-30e-3p	56570584	56570590	7mer-m8	56570567	56570591	162.00	-14.50
CAediting_286637	chr3_56570589_+	ENSG00000180376.15	ENST00000434467	hsa-miR-630	56570587	56570594	8mer-1a	56570573	56570594	141.00	-13.07
CAediting_286639	chr3_56570593_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3680-3p	56570590	56570597	8mer-1a	56570575	56570597	144.00	-15.74
CAediting_286639	chr3_56570593_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3680-3p	56570590	56570597	8mer-1a	56570575	56570597	144.00	-15.74
CAediting_286641	chr3_56570596_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4742-3p	56570589	56570596	8mer-1a	56570574	56570596	142.00	-9.18
CAediting_286642	chr3_56570597_+	ENSG00000180376.15	ENST00000434467	hsa-miR-578	56570592	56570598	7mer-m8	56570579	56570599	155.00	-9.89
CAediting_286642	chr3_56570597_+	ENSG00000180376.15	ENST00000434467	hsa-miR-643	56570590	56570597	8mer-1a	56570576	56570597	156.00	-13.80
CAediting_286643	chr3_56570598_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6844	56570592	56570598	7mer-m8	56570578	56570599	158.00	-7.75
CAediting_286646	chr3_56570633_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4508	56570626	56570632	7mer-m8	56570617	56570633	147.00	-22.77
CAediting_286646	chr3_56570633_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6784-5p	56570627	56570633	7mer-m8	56570615	56570634	156.00	-29.41
CAediting_286647	chr3_56570637_+	ENSG00000180376.15	ENST00000434467	hsa-miR-1207-3p	56570630	56570636	7mer-m8	56570619	56570637	145.00	-13.29
CAediting_286647	chr3_56570637_+	ENSG00000180376.15	ENST00000434467	hsa-miR-646	56570632	56570638	7mer-m8	56570620	56570639	148.00	-20.34
CAediting_286650	chr3_56570676_+	ENSG00000180376.15	ENST00000434467	hsa-miR-361-3p	56570670	56570676	7mer-m8	56570651	56570677	161.00	-31.43
CAediting_286651	chr3_56570689_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6784-3p	56570688	56570693	6mer	56570672	56570694	147.00	-30.55
CAediting_286652	chr3_56570693_+	ENSG00000180376.15	ENST00000434467	hsa-miR-324-3p	56570686	56570692	7mer-m8	56570674	56570693	141.00	-22.69
CAediting_286652	chr3_56570693_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4690-3p	56570690	56570697	8mer-1a	56570678	56570697	157.00	-26.06
CAediting_286652	chr3_56570693_+	ENSG00000180376.15	ENST00000434467	hsa-miR-5685	56570690	56570697	8mer-1a	56570674	56570697	154.00	-23.09
CAediting_286682	chr3_56593008_+	ENSG00000180376.15	ENST00000471681	hsa-miR-3977	56593003	56593010	8mer-1a	56592988	56593010	158.00	-12.18
CAediting_286682	chr3_56593008_+	ENSG00000180376.15	ENST00000341455	hsa-miR-3977	56593003	56593010	8mer-1a	56592988	56593010	158.00	-12.18
CAediting_286684	chr3_56593024_+	ENSG00000180376.15	ENST00000471681	hsa-miR-4753-3p	56593018	56593025	8mer-1a	56593005	56593025	148.00	-15.37
CAediting_286684	chr3_56593024_+	ENSG00000180376.15	ENST00000471681	hsa-miR-6809-3p	56593019	56593025	7mer-m8	56593004	56593026	143.00	-6.88
CAediting_286684	chr3_56593024_+	ENSG00000180376.15	ENST00000341455	hsa-miR-4753-3p	56593018	56593025	8mer-1a	56593005	56593025	148.00	-15.37
CAediting_286684	chr3_56593024_+	ENSG00000180376.15	ENST00000341455	hsa-miR-6809-3p	56593019	56593025	7mer-m8	56593004	56593026	143.00	-6.88
CAediting_286624	chr3_56570513_+	ENSG00000180376.15	ENST00000434467	hsa-miR-10392-3p	56570511	56570518	8mer-1a	56570495	56570518	146.00	-23.24
CAediting_286624	chr3_56570513_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6793-3p	56570506	56570512	7mer-m8	56570494	56570513	140.00	-16.57
CAediting_286626	chr3_56570534_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6790-3p	56570532	56570539	8mer-1a	56570518	56570539	148.00	-21.52
CAediting_286653	chr3_56570698_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4267	56570691	56570697	7mer-m8	56570683	56570698	148.00	-20.54
CAediting_286653	chr3_56570698_+	ENSG00000180376.15	ENST00000434467	hsa-miR-7977	56570693	56570699	7mer-m8	56570682	56570700	150.00	-18.31
CAediting_286683	chr3_56593011_+	ENSG00000180376.15	ENST00000471681	hsa-miR-7152-5p	56593007	56593013	7mer-m8	56592992	56593014	147.00	-11.78
CAediting_286683	chr3_56593011_+	ENSG00000180376.15	ENST00000341455	hsa-miR-7152-5p	56593007	56593013	7mer-m8	56592992	56593014	147.00	-11.78

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_286622	chr3_56570496_+	ENSG00000180376.15	ENST00000434467	hsa-miR-10399-5p	56570491	56570497	7mer-m8	56570476	56570498	148	-13.1
CAediting_286648	chr3_56570641_+	ENSG00000180376.15	ENST00000434467	hsa-miR-1200	56570637	56570643	7mer-m8	56570623	56570644	140	-19.23
CAediting_286650	chr3_56570676_+	ENSG00000180376.15	ENST00000434467	hsa-miR-1281	56570673	56570679	7mer-m8	56570664	56570680	141	-17.01
CAediting_286629	chr3_56570545_+	ENSG00000180376.15	ENST00000434467	hsa-miR-138-2-3p	56570541	56570548	8mer-1a	56570527	56570548	149	-15.52
CAediting_286624	chr3_56570513_+	ENSG00000180376.15	ENST00000434467	hsa-miR-150-5p	56570507	56570513	7mer-m8	56570494	56570514	150	-15.66
CAediting_286605	chr3_56569890_+	ENSG00000180376.15	ENST00000434467	hsa-miR-25-3p	56569885	56569891	7mer-m8	56569870	56569892	154	-18.76
CAediting_286606	chr3_56569896_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3085-5p	56569891	56569898	8mer-1a	56569876	56569898	154	-22.66
CAediting_286607	chr3_56569904_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3160-3p	56569901	56569908	8mer-1a	56569887	56569908	150	-17.18
CAediting_286607	chr3_56569904_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3160-3p	56569901	56569908	8mer-1a	56569887	56569908	150	-17.18
CAediting_286605	chr3_56569890_+	ENSG00000180376.15	ENST00000434467	hsa-miR-32-5p	56569885	56569891	7mer-m8	56569870	56569892	145	-12.44
CAediting_286609	chr3_56569939_+	ENSG00000180376.15	ENST00000434467	hsa-miR-34b-3p	56569934	56569940	7mer-m8	56569918	56569941	148	-12.46
CAediting_286608	chr3_56569934_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3614-5p	56569932	56569938	7mer-1a	56569915	56569938	147	-19.65
CAediting_286605	chr3_56569890_+	ENSG00000180376.15	ENST00000434467	hsa-miR-363-3p	56569885	56569891	7mer-m8	56569875	56569892	146	-12.63
CAediting_286611	chr3_56569961_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3664-3p	56569955	56569961	7mer-m8	56569939	56569962	154	-20.99
CAediting_286620	chr3_56570465_+	ENSG00000180376.15	ENST00000434467	hsa-miR-3692-5p	56570459	56570465	7mer-m8	56570443	56570466	152	-17.25
CAediting_286628	chr3_56570540_+	ENSG00000180376.15	ENST00000434467	hsa-miR-378a-5p	56570536	56570543	8mer-1a	56570521	56570543	148	-18.04
CAediting_286613	chr3_56569996_+	ENSG00000180376.15	ENST00000434467	hsa-miR-382-5p	56569994	56570000	7mer-1a	56569979	56570000	141	-23.26
CAediting_286618	chr3_56570119_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4284	56570115	56570122	8mer-1a	56570105	56570122	147	-15.04
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4453	56569875	56569881	7mer-m8	56569863	56569882	147	-15.12
CAediting_286610	chr3_56569952_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4478	56569949	56569955	7mer-m8	56569941	56569956	149	-25.05
CAediting_286645	chr3_56570627_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4489	56570625	56570632	8mer-1a	56570614	56570632	148	-23.42
CAediting_286614	chr3_56570016_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4509	56570011	56570016	6mer	56569997	56570017	153	-18.47
CAediting_286614	chr3_56570016_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4509	56570011	56570016	6mer	56569997	56570017	153	-18.47
CAediting_286614	chr3_56570016_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4509	56570011	56570016	6mer	56569997	56570017	153	-18.47
CAediting_286604	chr3_56569879_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4538	56569875	56569881	7mer-m8	56569862	56569882	146	-14.89
CAediting_286610	chr3_56569952_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4649-3p	56569946	56569952	7mer-m8	56569933	56569953	140	-14.11
CAediting_286621	chr3_56570473_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4715-5p	56570469	56570475	7mer-m8	56570451	56570476	155	-16.81
CAediting_286631	chr3_56570564_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4716-5p	56570562	56570568	7mer-m8	56570548	56570569	144	-10.91
CAediting_286646	chr3_56570633_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4731-5p	56570628	56570634	7mer-m8	56570614	56570635	153	-18.33
CAediting_286643	chr3_56570598_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4735-5p	56570596	56570602	7mer-m8	56570582	56570603	140	-4.6
CAediting_286644	chr3_56570599_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4735-5p	56570596	56570602	7mer-m8	56570582	56570603	140	-4.6
CAediting_286614	chr3_56570016_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4744	56570010	56570016	7mer-m8	56569996	56570017	143	-7.91
CAediting_286631	chr3_56570564_+	ENSG00000180376.15	ENST00000434467	hsa-miR-4781-3p	56570560	56570566	7mer-m8	56570542	56570567	145	-11.4
CAediting_286645	chr3_56570627_+	ENSG00000180376.15	ENST00000434467	hsa-miR-548v	56570622	56570628	7mer-m8	56570607	56570629	147	-18.85
CAediting_286635	chr3_56570579_+	ENSG00000180376.15	ENST00000434467	hsa-miR-576-3p	56570575	56570581	7mer-m8	56570561	56570582	145	-13.4
CAediting_286615	chr3_56570019_+	ENSG00000180376.15	ENST00000434467	hsa-miR-593-3p	56570018	56570024	7mer-1a	56570006	56570024	144	-21.88
CAediting_286630	chr3_56570559_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6069	56570555	56570562	8mer-1a	56570542	56570562	141	-17.09
CAediting_286622	chr3_56570496_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6504-3p	56570491	56570497	7mer-m8	56570477	56570498	149	-13.67
CAediting_286649	chr3_56570654_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6747-3p	56570649	56570655	7mer-m8	56570634	56570656	149	-23.08
CAediting_286649	chr3_56570654_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6752-3p	56570650	56570656	7mer-m8	56570638	56570657	152	-24.77
CAediting_286624	chr3_56570513_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6778-3p	56570509	56570515	7mer-m8	56570497	56570516	144	-15.81
CAediting_286650	chr3_56570676_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6778-3p	56570672	56570678	7mer-m8	56570661	56570679	143	-17.77
CAediting_286650	chr3_56570676_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6791-3p	56570673	56570678	6mer	56570660	56570679	145	-23.76
CAediting_286649	chr3_56570654_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6801-3p	56570651	56570658	8mer-1a	56570639	56570658	148	-24.49
CAediting_286649	chr3_56570654_+	ENSG00000180376.15	ENST00000434467	hsa-miR-6810-3p	56570651	56570658	8mer-1a	56570636	56570658	146	-24.94
CAediting_286622	chr3_56570496_+	ENSG00000180376.15	ENST00000434467	hsa-miR-7151-3p	56570489	56570496	8mer-1a	56570480	56570496	146	-20.97
CAediting_286645	chr3_56570627_+	ENSG00000180376.15	ENST00000434467	hsa-miR-7151-3p	56570620	56570626	7mer-m8	56570607	56570627	144	-16.67
CAediting_286610	chr3_56569952_+	ENSG00000180376.15	ENST00000434467	hsa-miR-7160-5p	56569947	56569953	7mer-m8	56569934	56569954	146	-17.63
CAediting_286605	chr3_56569890_+	ENSG00000180376.15	ENST00000434467	hsa-miR-7703	56569883	56569890	8mer-1a	56569868	56569890	154	-19.44
CAediting_286626	chr3_56570534_+	ENSG00000180376.15	ENST00000434467	hsa-miR-8070	56570528	56570534	7mer-1a	56570515	56570534	145	-17.16
CAediting_286605	chr3_56569890_+	ENSG00000180376.15	ENST00000434467	hsa-miR-92a-3p	56569885	56569891	7mer-m8	56569875	56569892	147	-19.71
CAediting_286605	chr3_56569890_+	ENSG00000180376.15	ENST00000434467	hsa-miR-92a-3p	56569885	56569891	7mer-m8	56569875	56569892	147	-19.71
CAediting_286605	chr3_56569890_+	ENSG00000180376.15	ENST00000434467	hsa-miR-92b-3p	56569885	56569891	7mer-m8	56569871	56569892	150	-18.96
CAediting_286684	chr3_56593024_+	ENSG00000180376.15	ENST00000471681	hsa-miR-1250-3p	56593021	56593027	7mer-m8	56593010	56593028	140	-8.2
CAediting_286683	chr3_56593011_+	ENSG00000180376.15	ENST00000471681	hsa-miR-5584-3p	56593009	56593015	7mer-m8	56592996	56593016	142	-8.47
CAediting_286683	chr3_56593011_+	ENSG00000180376.15	ENST00000471681	hsa-miR-578	56593007	56593013	7mer-m8	56592994	56593014	151	-14.88
CAediting_286684	chr3_56593024_+	ENSG00000180376.15	ENST00000341455	hsa-miR-1250-3p	56593021	56593027	7mer-m8	56593010	56593028	140	-8.2
CAediting_286683	chr3_56593011_+	ENSG00000180376.15	ENST00000341455	hsa-miR-5584-3p	56593009	56593015	7mer-m8	56592996	56593016	142	-8.47
CAediting_286683	chr3_56593011_+	ENSG00000180376.15	ENST00000341455	hsa-miR-578	56593007	56593013	7mer-m8	56592994	56593014	151	-14.88

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000180376.15	ENST00000471681	hsa-miR-1304-3p	56615169	56615175	7mer-m8	56615153	56615176	157	-17.68
CAediting_846604	chr11_93733708_-	ENSG00000180376.15	ENST00000341455	hsa-miR-1304-3p	56615169	56615175	7mer-m8	56615153	56615176	157	-17.68
CAediting_1229413	chr17_67471544_+	ENSG00000180376.15	ENST00000434467	hsa-miR-548aa	56566674	56566681	8mer-1a	56566655	56566681	155	-9.56
CAediting_1054808	chr15_66496985_-	ENSG00000180376.15	ENST00000434467	hsa-miR-4512	56569558	56569565	8mer-1a	56569544	56569565	143	-14.39
CAediting_1160181	chr17_7017644_-	ENSG00000180376.15	ENST00000434467	hsa-miR-195-3p	56570246	56570253	8mer-1a	56570232	56570253	145	-9.78
CAediting_1368054	chr19_46709310_-	ENSG00000180376.15	ENST00000434467	hsa-miR-320e	56569450	56569456	7mer-m8	56569439	56569457	151	-18.57
CAediting_1351755	chr19_40282625_-	ENSG00000180376.15	ENST00000471681	hsa-miR-641	56593600	56593605	6mer	56593584	56593606	142	-19.86
CAediting_1368054	chr19_46709310_-	ENSG00000180376.15	ENST00000471681	hsa-miR-320e	56593974	56593981	8mer-1a	56593963	56593981	158	-22.78
CAediting_1229414	chr17_67471546_+	ENSG00000180376.15	ENST00000422788	hsa-miR-548aa	56561362	56561368	7mer-m8	56561345	56561369	156	-11.28
CAediting_1351755	chr19_40282625_-	ENSG00000180376.15	ENST00000341455	hsa-miR-641	56593600	56593605	6mer	56593584	56593606	142	-19.86
CAediting_1368054	chr19_46709310_-	ENSG00000180376.15	ENST00000341455	hsa-miR-320e	56593974	56593981	8mer-1a	56593963	56593981	158	-22.78
CAediting_1524209	chrX_134546392_-	ENSG00000180376.15	ENST00000434467	hsa-miR-503-5p	56570617	56570622	6mer	56570600	56570623	140	-20.24

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for CCDC66

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000326595.10	protein_coding
ENST00000341455.9	nonsense_mediated_decay
ENST00000394672.6	protein_coding
ENST00000434467.4	nonsense_mediated_decay
ENST00000442522.5	processed_transcript
ENST00000471681.4	nonsense_mediated_decay
ENST00000484623.4	processed_transcript
ENST00000494672.1	retained_intron
ENST00000476142.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_286682	ENST00000326595.10	chr3_56593008_+	-655.00	-653.50	-657.70
CAediting_286683	ENST00000326595.10	chr3_56593011_+	-654.00	-653.50	-657.70
CAediting_286684	ENST00000326595.10	chr3_56593024_+	-654.60	-653.50	-657.70
CAediting_286682	ENST00000341455.9	chr3_56593008_+	-653.20	-650.70	-657.90
CAediting_286683	ENST00000341455.9	chr3_56593011_+	-654.80	-650.70	-657.90
CAediting_286684	ENST00000341455.9	chr3_56593024_+	-654.90	-650.70	-657.90
CAediting_286682	ENST00000394672.6	chr3_56593008_+	-674.60	-673.10	-677.70
CAediting_286683	ENST00000394672.6	chr3_56593011_+	-674.00	-673.10	-677.70
CAediting_286684	ENST00000394672.6	chr3_56593024_+	-675.70	-673.10	-677.70
CAediting_286604	ENST00000434467.4	chr3_56569879_+	-856.70	-852.50	-872.70
CAediting_286605	ENST00000434467.4	chr3_56569890_+	-852.20	-852.50	-872.70
CAediting_286606	ENST00000434467.4	chr3_56569896_+	-857.90	-852.50	-872.70
CAediting_286607	ENST00000434467.4	chr3_56569904_+	-851.80	-852.50	-872.70
CAediting_286608	ENST00000434467.4	chr3_56569934_+	-852.20	-852.50	-872.70
CAediting_286609	ENST00000434467.4	chr3_56569939_+	-851.90	-852.50	-872.70
CAediting_286610	ENST00000434467.4	chr3_56569952_+	-851.80	-852.50	-872.70
CAediting_286611	ENST00000434467.4	chr3_56569961_+	-851.60	-852.50	-872.70
CAediting_286612	ENST00000434467.4	chr3_56569974_+	-852.50	-852.50	-872.70
CAediting_286613	ENST00000434467.4	chr3_56569996_+	-855.90	-852.50	-872.70
CAediting_286614	ENST00000434467.4	chr3_56570016_+	-852.20	-852.50	-872.70
CAediting_286615	ENST00000434467.4	chr3_56570019_+	-859.10	-852.50	-872.70
CAediting_286616	ENST00000434467.4	chr3_56570110_+	-852.50	-852.50	-872.70
CAediting_286617	ENST00000434467.4	chr3_56570112_+	-851.80	-852.50	-872.70
CAediting_286618	ENST00000434467.4	chr3_56570119_+	-851.60	-852.50	-872.70
CAediting_286619	ENST00000434467.4	chr3_56570126_+	-857.90	-852.50	-872.70
CAediting_286620	ENST00000434467.4	chr3_56570465_+	-851.80	-852.50	-872.70
CAediting_286621	ENST00000434467.4	chr3_56570473_+	-851.30	-852.50	-872.70
CAediting_286622	ENST00000434467.4	chr3_56570496_+	-852.60	-852.50	-872.70
CAediting_286623	ENST00000434467.4	chr3_56570505_+	-852.10	-852.50	-872.70
CAediting_286624	ENST00000434467.4	chr3_56570513_+	-851.60	-852.50	-872.70
CAediting_286625	ENST00000434467.4	chr3_56570519_+	-851.70	-852.50	-872.70
CAediting_286626	ENST00000434467.4	chr3_56570534_+	-855.10	-852.50	-872.70
CAediting_286627	ENST00000434467.4	chr3_56570535_+	-852.50	-852.50	-872.70
CAediting_286628	ENST00000434467.4	chr3_56570540_+	-852.50	-852.50	-872.70
CAediting_286629	ENST00000434467.4	chr3_56570545_+	-853.00	-852.50	-872.70
CAediting_286630	ENST00000434467.4	chr3_56570559_+	-859.10	-852.50	-872.70
CAediting_286631	ENST00000434467.4	chr3_56570564_+	-852.50	-852.50	-872.70
CAediting_286632	ENST00000434467.4	chr3_56570572_+	-852.00	-852.50	-872.70
CAediting_286633	ENST00000434467.4	chr3_56570573_+	-852.60	-852.50	-872.70
CAediting_286634	ENST00000434467.4	chr3_56570574_+	-852.50	-852.50	-872.70
CAediting_286635	ENST00000434467.4	chr3_56570579_+	-856.00	-852.50	-872.70
CAediting_286636	ENST00000434467.4	chr3_56570588_+	-852.60	-852.50	-872.70
CAediting_286637	ENST00000434467.4	chr3_56570589_+	-852.60	-852.50	-872.70
CAediting_286638	ENST00000434467.4	chr3_56570591_+	-854.80	-852.50	-872.70
CAediting_286639	ENST00000434467.4	chr3_56570593_+	-852.50	-852.50	-872.70
CAediting_286640	ENST00000434467.4	chr3_56570595_+	-852.20	-852.50	-872.70
CAediting_286641	ENST00000434467.4	chr3_56570596_+	-852.60	-852.50	-872.70
CAediting_286642	ENST00000434467.4	chr3_56570597_+	-852.60	-852.50	-872.70
CAediting_286643	ENST00000434467.4	chr3_56570598_+	-852.60	-852.50	-872.70
CAediting_286644	ENST00000434467.4	chr3_56570599_+	-854.10	-852.50	-872.70
CAediting_286645	ENST00000434467.4	chr3_56570627_+	-852.10	-852.50	-872.70
CAediting_286646	ENST00000434467.4	chr3_56570633_+	-851.80	-852.50	-872.70
CAediting_286647	ENST00000434467.4	chr3_56570637_+	-852.50	-852.50	-872.70
CAediting_286648	ENST00000434467.4	chr3_56570641_+	-851.80	-852.50	-872.70
CAediting_286649	ENST00000434467.4	chr3_56570654_+	-851.80	-852.50	-872.70
CAediting_286650	ENST00000434467.4	chr3_56570676_+	-852.40	-852.50	-872.70
CAediting_286651	ENST00000434467.4	chr3_56570689_+	-851.80	-852.50	-872.70
CAediting_286652	ENST00000434467.4	chr3_56570693_+	-851.60	-852.50	-872.70
CAediting_286653	ENST00000434467.4	chr3_56570698_+	-851.60	-852.50	-872.70
CAediting_286604	ENST00000442522.5	chr3_56569879_+	-728.90	-728.90	-743.00
CAediting_286605	ENST00000442522.5	chr3_56569890_+	-729.90	-728.90	-743.00
CAediting_286606	ENST00000442522.5	chr3_56569896_+	-728.50	-728.90	-743.00
CAediting_286607	ENST00000442522.5	chr3_56569904_+	-728.20	-728.90	-743.00
CAediting_286608	ENST00000442522.5	chr3_56569934_+	-728.60	-728.90	-743.00
CAediting_286609	ENST00000442522.5	chr3_56569939_+	-728.30	-728.90	-743.00
CAediting_286610	ENST00000442522.5	chr3_56569952_+	-728.20	-728.90	-743.00
CAediting_286611	ENST00000442522.5	chr3_56569961_+	-728.00	-728.90	-743.00
CAediting_286612	ENST00000442522.5	chr3_56569974_+	-728.90	-728.90	-743.00
CAediting_286613	ENST00000442522.5	chr3_56569996_+	-732.30	-728.90	-743.00
CAediting_286614	ENST00000442522.5	chr3_56570016_+	-728.60	-728.90	-743.00
CAediting_286615	ENST00000442522.5	chr3_56570019_+	-735.50	-728.90	-743.00
CAediting_286616	ENST00000442522.5	chr3_56570110_+	-728.90	-728.90	-743.00
CAediting_286617	ENST00000442522.5	chr3_56570112_+	-728.20	-728.90	-743.00
CAediting_286618	ENST00000442522.5	chr3_56570119_+	-728.00	-728.90	-743.00
CAediting_286619	ENST00000442522.5	chr3_56570126_+	-734.30	-728.90	-743.00
CAediting_286620	ENST00000442522.5	chr3_56570465_+	-728.20	-728.90	-743.00
CAediting_286621	ENST00000442522.5	chr3_56570473_+	-727.70	-728.90	-743.00
CAediting_286622	ENST00000442522.5	chr3_56570496_+	-729.00	-728.90	-743.00
CAediting_286623	ENST00000442522.5	chr3_56570505_+	-728.50	-728.90	-743.00
CAediting_286624	ENST00000442522.5	chr3_56570513_+	-728.00	-728.90	-743.00
CAediting_286625	ENST00000442522.5	chr3_56570519_+	-728.10	-728.90	-743.00
CAediting_286626	ENST00000442522.5	chr3_56570534_+	-731.50	-728.90	-743.00
CAediting_286627	ENST00000442522.5	chr3_56570535_+	-728.90	-728.90	-743.00
CAediting_286628	ENST00000442522.5	chr3_56570540_+	-728.90	-728.90	-743.00
CAediting_286629	ENST00000442522.5	chr3_56570545_+	-729.40	-728.90	-743.00
CAediting_286630	ENST00000442522.5	chr3_56570559_+	-735.50	-728.90	-743.00
CAediting_286631	ENST00000442522.5	chr3_56570564_+	-728.90	-728.90	-743.00
CAediting_286632	ENST00000442522.5	chr3_56570572_+	-728.40	-728.90	-743.00
CAediting_286633	ENST00000442522.5	chr3_56570573_+	-729.00	-728.90	-743.00
CAediting_286634	ENST00000442522.5	chr3_56570574_+	-728.90	-728.90	-743.00
CAediting_286635	ENST00000442522.5	chr3_56570579_+	-732.40	-728.90	-743.00
CAediting_286636	ENST00000442522.5	chr3_56570588_+	-729.00	-728.90	-743.00
CAediting_286637	ENST00000442522.5	chr3_56570589_+	-729.00	-728.90	-743.00
CAediting_286638	ENST00000442522.5	chr3_56570591_+	-731.20	-728.90	-743.00
CAediting_286639	ENST00000442522.5	chr3_56570593_+	-728.90	-728.90	-743.00
CAediting_286640	ENST00000442522.5	chr3_56570595_+	-728.60	-728.90	-743.00
CAediting_286641	ENST00000442522.5	chr3_56570596_+	-729.00	-728.90	-743.00
CAediting_286642	ENST00000442522.5	chr3_56570597_+	-729.00	-728.90	-743.00
CAediting_286643	ENST00000442522.5	chr3_56570598_+	-729.00	-728.90	-743.00
CAediting_286644	ENST00000442522.5	chr3_56570599_+	-730.50	-728.90	-743.00
CAediting_286645	ENST00000442522.5	chr3_56570627_+	-728.50	-728.90	-743.00
CAediting_286646	ENST00000442522.5	chr3_56570633_+	-728.20	-728.90	-743.00
CAediting_286647	ENST00000442522.5	chr3_56570637_+	-728.90	-728.90	-743.00
CAediting_286648	ENST00000442522.5	chr3_56570641_+	-728.20	-728.90	-743.00
CAediting_286649	ENST00000442522.5	chr3_56570654_+	-728.20	-728.90	-743.00
CAediting_286682	ENST00000471681.4	chr3_56593008_+	-681.30	-679.20	-688.00
CAediting_286683	ENST00000471681.4	chr3_56593011_+	-680.70	-679.20	-688.00
CAediting_286684	ENST00000471681.4	chr3_56593024_+	-683.40	-679.20	-688.00
CAediting_286682	ENST00000484623.4	chr3_56593008_+	-193.30	-190.60	-195.70
CAediting_286683	ENST00000484623.4	chr3_56593011_+	-191.40	-190.60	-195.70
CAediting_286684	ENST00000484623.4	chr3_56593024_+	-193.10	-190.60	-195.70
CAediting_286682	ENST00000494672.1	chr3_56593008_+	-127.80	-126.80	-133.80
CAediting_286683	ENST00000494672.1	chr3_56593011_+	-130.60	-126.80	-133.80
CAediting_286684	ENST00000494672.1	chr3_56593024_+	-130.30	-126.80	-133.80
CAediting_286691	ENST00000476142.1	chr3_56619067_+	-706.30	-699.90	-706.30

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Relation with ADAR for CCDC66

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for CCDC66

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for CCDC66

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for CCDC66

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CCDC66

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene