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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CDH19 (CAeditome ID:28513)

Gene summary for CDH19

check button Gene summary
Gene informationGene symbol

CDH19

Gene ID

28513

Gene namecadherin 19
SynonymsCDH7|CDH7L2
Cytomap

18q22.1

Type of geneprotein-coding
Descriptioncadherin-19cadherin 19, type 2
Modification date20210518
UniProtAcc

Q9H159

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for CDH19

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000071991.7

check button RNA A-to-I editing events in Cancer.
CAediting_1267889(66518319, -), CAediting_1267890(66518339, -), CAediting_1267891(66518372, -), CAediting_1267892(66518378, -), CAediting_1267893(66518398, -), CAediting_1267894(66518407, -), CAediting_1267895(66518416, -), CAediting_1267896(66518515, -), CAediting_1267897(66519929, -), CAediting_1267898(66519942, -), CAediting_1267899(66519996, -), CAediting_1267900(66520018, -), CAediting_1267901(66520085, -), CAediting_1267902(66520102, -), CAediting_1267903(66520139, -), CAediting_1267904(66520179, -), CAediting_1267905(66520181, -), CAediting_1267906(66521618, -), CAediting_1267907(66521628, -), CAediting_1267908(66521651, -), CAediting_1267909(66521660, -), CAediting_1267910(66521768, -), CAediting_1267911(66521789, -), CAediting_1267912(66521798, -), CAediting_1267913(66521821, -), CAediting_1267914(66521828, -), CAediting_1267915(66521845, -), CAediting_1267916(66522085, -), CAediting_1267917(66522115, -), CAediting_1267918(66522116, -), CAediting_1267919(66522117, -), CAediting_1267920(66522120, -), CAediting_1267921(66522123, -), CAediting_1267922(66522405, -), CAediting_1267923(66522415, -), CAediting_1267924(66522467, -), CAediting_1267925(66522529, -), CAediting_1267926(66527498, -), CAediting_1267927(66527504, -), CAediting_1267928(66527610, -), CAediting_1267929(66527628, -), CAediting_1267930(66527638, -), CAediting_1267931(66527672, -), CAediting_1267932(66531359, -), CAediting_1267933(66531373, -), CAediting_1267934(66531374, -), CAediting_1267935(66531399, -), CAediting_1267936(66531412, -), CAediting_1267937(66531432, -), CAediting_1267938(66531451, -), CAediting_1267939(66531454, -), CAediting_1267940(66531470, -), CAediting_1267941(66531471, -), CAediting_1267942(66531475, -), CAediting_1267943(66531484, -), CAediting_1267944(66531506, -), CAediting_1267945(66531509, -), CAediting_1267946(66531510, -), CAediting_1267947(66531518, -), CAediting_1267948(66531523, -), CAediting_1267949(66531535, -), CAediting_1267950(66531547, -), CAediting_1267951(66531559, -), CAediting_1267952(66531575, -), CAediting_1267953(66531578, -), CAediting_1267954(66531583, -), CAediting_1267955(66532043, -), CAediting_1267956(66532073, -), CAediting_1267957(66532082, -), CAediting_1267958(66532088, -), CAediting_1267959(66532092, -), CAediting_1267960(66532095, -), CAediting_1267961(66532099, -), CAediting_1267962(66532127, -), CAediting_1267963(66532131, -), CAediting_1267964(66532134, -), CAediting_1267965(66532135, -), CAediting_1267966(66532143, -), CAediting_1267967(66532144, -), CAediting_1267968(66532145, -), CAediting_1267969(66532146, -), CAediting_1267970(66532168, -), CAediting_1267971(66532204, -), CAediting_1267972(66532205, -), CAediting_1267973(66532207, -), CAediting_1267974(66532217, -), CAediting_1267975(66532218, -), CAediting_1267976(66532231, -), CAediting_1267977(66532234, -), CAediting_1267978(66532239, -), CAediting_1267979(66532240, -), CAediting_1267980(66532247, -), CAediting_1267981(66532255, -), CAediting_1267982(66543059, -), CAediting_1267983(66543060, -), CAediting_1267984(66543061, -), CAediting_1267985(66543093, -), CAediting_1267986(66543102, -), CAediting_1267987(66543158, -), CAediting_1267988(66543190, -), CAediting_1267989(66543209, -), CAediting_1267990(66543264, -), CAediting_1267991(66543294, -), CAediting_1267992(66543300, -), CAediting_1267993(66543628, -), CAediting_1267994(66543639, -), CAediting_1267995(66543640, -), CAediting_1267996(66543659, -), CAediting_1267997(66543663, -), CAediting_1267998(66543698, -), CAediting_1267999(66543720, -), CAediting_1268000(66543726, -), CAediting_1268001(66543734, -), CAediting_1268002(66543748, -), CAediting_1268003(66543771, -), CAediting_1268004(66543783, -), CAediting_1268005(66543800, -), CAediting_1268006(66543807, -), CAediting_1268007(66543836, -), CAediting_1268008(66543847, -), CAediting_1268009(66543869, -), CAediting_1268010(66557914, -),

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RNA editing positional annotations for CDH19 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1267889chr18_66518319_-intronic
CAediting_1267890chr18_66518339_-intronic
CAediting_1267891chr18_66518372_-intronic
CAediting_1267892chr18_66518378_-intronic
CAediting_1267893chr18_66518398_-intronic
CAediting_1267894chr18_66518407_-intronic
CAediting_1267895chr18_66518416_-intronic
CAediting_1267896chr18_66518515_-intronic
CAediting_1267897chr18_66519929_-intronic
CAediting_1267898chr18_66519942_-intronic
CAediting_1267899chr18_66519996_-intronic
CAediting_1267900chr18_66520018_-intronic
CAediting_1267901chr18_66520085_-intronic
CAediting_1267902chr18_66520102_-intronic
CAediting_1267903chr18_66520139_-intronic
CAediting_1267904chr18_66520179_-intronic
CAediting_1267905chr18_66520181_-intronic
CAediting_1267906chr18_66521618_-intronic
CAediting_1267907chr18_66521628_-intronic
CAediting_1267908chr18_66521651_-intronic
CAediting_1267909chr18_66521660_-intronic
CAediting_1267910chr18_66521768_-intronic
CAediting_1267911chr18_66521789_-intronic
CAediting_1267912chr18_66521798_-intronic
CAediting_1267913chr18_66521821_-intronic
CAediting_1267914chr18_66521828_-intronic
CAediting_1267915chr18_66521845_-intronic
CAediting_1267916chr18_66522085_-intronic
CAediting_1267917chr18_66522115_-intronic
CAediting_1267918chr18_66522116_-intronic
CAediting_1267919chr18_66522117_-intronic
CAediting_1267920chr18_66522120_-intronic
CAediting_1267921chr18_66522123_-intronic
CAediting_1267922chr18_66522405_-intronic
CAediting_1267923chr18_66522415_-intronic
CAediting_1267924chr18_66522467_-intronic
CAediting_1267925chr18_66522529_-intronic
CAediting_1267926chr18_66527498_-intronic
CAediting_1267927chr18_66527504_-intronic
CAediting_1267928chr18_66527610_-intronic
CAediting_1267929chr18_66527628_-intronic
CAediting_1267930chr18_66527638_-intronic
CAediting_1267931chr18_66527672_-intronic
CAediting_1267932chr18_66531359_-intronic
CAediting_1267933chr18_66531373_-intronic
CAediting_1267934chr18_66531374_-intronic
CAediting_1267935chr18_66531399_-intronic
CAediting_1267936chr18_66531412_-intronic
CAediting_1267937chr18_66531432_-intronic
CAediting_1267938chr18_66531451_-intronic
CAediting_1267939chr18_66531454_-intronic
CAediting_1267940chr18_66531470_-intronic
CAediting_1267941chr18_66531471_-intronic
CAediting_1267942chr18_66531475_-intronic
CAediting_1267943chr18_66531484_-intronic
CAediting_1267944chr18_66531506_-intronic
CAediting_1267945chr18_66531509_-intronic
CAediting_1267946chr18_66531510_-intronic
CAediting_1267947chr18_66531518_-intronic
CAediting_1267948chr18_66531523_-intronic
CAediting_1267949chr18_66531535_-intronic
CAediting_1267950chr18_66531547_-intronic
CAediting_1267951chr18_66531559_-intronic
CAediting_1267952chr18_66531575_-intronic
CAediting_1267953chr18_66531578_-intronic
CAediting_1267954chr18_66531583_-intronic
CAediting_1267955chr18_66532043_-intronic
CAediting_1267956chr18_66532073_-intronic
CAediting_1267957chr18_66532082_-intronic
CAediting_1267958chr18_66532088_-intronic
CAediting_1267959chr18_66532092_-intronic
CAediting_1267960chr18_66532095_-intronic
CAediting_1267961chr18_66532099_-intronic
CAediting_1267962chr18_66532127_-intronic
CAediting_1267963chr18_66532131_-intronic
CAediting_1267964chr18_66532134_-intronic
CAediting_1267965chr18_66532135_-intronic
CAediting_1267966chr18_66532143_-intronic
CAediting_1267967chr18_66532144_-intronic
CAediting_1267968chr18_66532145_-intronic
CAediting_1267969chr18_66532146_-intronic
CAediting_1267970chr18_66532168_-intronic
CAediting_1267971chr18_66532204_-intronic
CAediting_1267972chr18_66532205_-intronic
CAediting_1267973chr18_66532207_-intronic
CAediting_1267974chr18_66532217_-intronic
CAediting_1267975chr18_66532218_-intronic
CAediting_1267976chr18_66532231_-intronic
CAediting_1267977chr18_66532234_-intronic
CAediting_1267978chr18_66532239_-intronic
CAediting_1267979chr18_66532240_-intronic
CAediting_1267980chr18_66532247_-intronic
CAediting_1267981chr18_66532255_-intronic
CAediting_1267982chr18_66543059_-intronic
CAediting_1267983chr18_66543060_-intronic
CAediting_1267984chr18_66543061_-intronic
CAediting_1267985chr18_66543093_-intronic
CAediting_1267986chr18_66543102_-intronic
CAediting_1267987chr18_66543158_-intronic
CAediting_1267988chr18_66543190_-intronic
CAediting_1267989chr18_66543209_-intronic
CAediting_1267990chr18_66543264_-intronic
CAediting_1267991chr18_66543294_-intronic
CAediting_1267992chr18_66543300_-intronic
CAediting_1267993chr18_66543628_-intronic
CAediting_1267994chr18_66543639_-intronic
CAediting_1267995chr18_66543640_-intronic
CAediting_1267996chr18_66543659_-intronic
CAediting_1267997chr18_66543663_-intronic
CAediting_1267998chr18_66543698_-intronic
CAediting_1267999chr18_66543720_-intronic
CAediting_1268000chr18_66543726_-intronic
CAediting_1268001chr18_66543734_-intronic
CAediting_1268002chr18_66543748_-intronic
CAediting_1268003chr18_66543771_-intronic
CAediting_1268004chr18_66543783_-intronic
CAediting_1268005chr18_66543800_-intronic
CAediting_1268006chr18_66543807_-intronic
CAediting_1268007chr18_66543836_-intronic
CAediting_1268008chr18_66543847_-intronic
CAediting_1268009chr18_66543869_-intronic
CAediting_1268010chr18_66557914_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1267889chr18_66518319_-SINEAluAluSq2
CAediting_1267890chr18_66518339_-SINEAluAluSq2
CAediting_1267891chr18_66518372_-SINEAluAluSq2
CAediting_1267892chr18_66518378_-SINEAluAluSq2
CAediting_1267893chr18_66518398_-SINEAluAluSq2
CAediting_1267894chr18_66518407_-SINEAluAluSq2
CAediting_1267895chr18_66518416_-SINEAluAluSq2
CAediting_1267896chr18_66518515_-SINEAluAluSq2
CAediting_1267897chr18_66519929_-SINEAluAluSc8
CAediting_1267898chr18_66519942_-SINEAluAluSc8
CAediting_1267899chr18_66519996_-SINEAluAluSc8
CAediting_1267900chr18_66520018_-SINEAluAluSc8
CAediting_1267901chr18_66520085_-SINEAluAluSc8
CAediting_1267902chr18_66520102_-SINEAluAluSc8
CAediting_1267903chr18_66520139_-SINEAluAluSc8
CAediting_1267904chr18_66520179_-SINEAluAluSc8
CAediting_1267905chr18_66520181_-SINEAluAluSc8
CAediting_1267906chr18_66521618_-SINEAluAluJr
CAediting_1267907chr18_66521628_-SINEAluAluJr
CAediting_1267908chr18_66521651_-SINEAluAluJr
CAediting_1267909chr18_66521660_-SINEAluAluJr
CAediting_1267910chr18_66521768_-SINEAluAluJr
CAediting_1267911chr18_66521789_-SINEAluAluJr
CAediting_1267912chr18_66521798_-SINEAluAluJr
CAediting_1267913chr18_66521821_-SINEAluAluJr
CAediting_1267914chr18_66521828_-SINEAluAluJr
CAediting_1267915chr18_66521845_-SINEAluAluJr
CAediting_1267916chr18_66522085_-SINEAluAluY
CAediting_1267917chr18_66522115_-SINEAluAluY
CAediting_1267918chr18_66522116_-SINEAluAluY
CAediting_1267919chr18_66522117_-SINEAluAluY
CAediting_1267920chr18_66522120_-SINEAluAluY
CAediting_1267921chr18_66522123_-SINEAluAluY
CAediting_1267922chr18_66522405_-SINEAluAluSq2
CAediting_1267923chr18_66522415_-SINEAluAluSq2
CAediting_1267924chr18_66522467_-SINEAluAluSq2
CAediting_1267925chr18_66522529_-SINEAluAluSq2
CAediting_1267926chr18_66527498_-SINEAluAluSx3
CAediting_1267927chr18_66527504_-SINEAluAluSx3
CAediting_1267928chr18_66527610_-SINEAluAluSx3
CAediting_1267929chr18_66527628_-SINEAluAluSx3
CAediting_1267930chr18_66527638_-SINEAluAluSx3
CAediting_1267931chr18_66527672_-SINEAluAluSx3
CAediting_1267932chr18_66531359_-SINEAluAluJb
CAediting_1267933chr18_66531373_-SINEAluAluJb
CAediting_1267934chr18_66531374_-SINEAluAluJb
CAediting_1267935chr18_66531399_-SINEAluAluJb
CAediting_1267936chr18_66531412_-SINEAluAluJb
CAediting_1267937chr18_66531432_-SINEAluAluJb
CAediting_1267938chr18_66531451_-SINEAluAluJb
CAediting_1267939chr18_66531454_-SINEAluAluJb
CAediting_1267940chr18_66531470_-SINEAluAluJb
CAediting_1267941chr18_66531471_-SINEAluAluJb
CAediting_1267942chr18_66531475_-SINEAluAluJb
CAediting_1267943chr18_66531484_-SINEAluAluJb
CAediting_1267944chr18_66531506_-SINEAluAluJb
CAediting_1267945chr18_66531509_-SINEAluAluJb
CAediting_1267946chr18_66531510_-SINEAluAluJb
CAediting_1267947chr18_66531518_-SINEAluAluJb
CAediting_1267948chr18_66531523_-SINEAluAluJb
CAediting_1267949chr18_66531535_-SINEAluAluJb
CAediting_1267950chr18_66531547_-SINEAluAluJb
CAediting_1267951chr18_66531559_-SINEAluAluJb
CAediting_1267952chr18_66531575_-SINEAluAluJb
CAediting_1267953chr18_66531578_-SINEAluAluJb
CAediting_1267954chr18_66531583_-SINEAluAluJb
CAediting_1267955chr18_66532043_-SINEAluAluSx
CAediting_1267956chr18_66532073_-SINEAluAluSx
CAediting_1267957chr18_66532082_-SINEAluAluSx
CAediting_1267958chr18_66532088_-SINEAluAluSx
CAediting_1267959chr18_66532092_-SINEAluAluSx
CAediting_1267960chr18_66532095_-SINEAluAluSx
CAediting_1267961chr18_66532099_-SINEAluAluSx
CAediting_1267962chr18_66532127_-SINEAluAluSx
CAediting_1267963chr18_66532131_-SINEAluAluSx
CAediting_1267964chr18_66532134_-SINEAluAluSx
CAediting_1267965chr18_66532135_-SINEAluAluSx
CAediting_1267966chr18_66532143_-SINEAluAluSx
CAediting_1267967chr18_66532144_-SINEAluAluSx
CAediting_1267968chr18_66532145_-SINEAluAluSx
CAediting_1267969chr18_66532146_-SINEAluAluSx
CAediting_1267970chr18_66532168_-SINEAluAluSx
CAediting_1267971chr18_66532204_-SINEAluAluSx
CAediting_1267972chr18_66532205_-SINEAluAluSx
CAediting_1267973chr18_66532207_-SINEAluAluSx
CAediting_1267974chr18_66532217_-SINEAluAluSx
CAediting_1267975chr18_66532218_-SINEAluAluSx
CAediting_1267976chr18_66532231_-SINEAluAluSx
CAediting_1267977chr18_66532234_-SINEAluAluSx
CAediting_1267978chr18_66532239_-SINEAluAluSx
CAediting_1267979chr18_66532240_-SINEAluAluSx
CAediting_1267980chr18_66532247_-SINEAluAluSx
CAediting_1267981chr18_66532255_-SINEAluAluSx
CAediting_1267982chr18_66543059_-SINEAluAluY
CAediting_1267983chr18_66543060_-SINEAluAluY
CAediting_1267984chr18_66543061_-SINEAluAluY
CAediting_1267985chr18_66543093_-SINEAluAluY
CAediting_1267986chr18_66543102_-SINEAluAluY
CAediting_1267987chr18_66543158_-SINEAluAluY
CAediting_1267988chr18_66543190_-SINEAluAluY
CAediting_1267989chr18_66543209_-SINEAluAluY
CAediting_1267990chr18_66543264_-SINEAluAluY
CAediting_1267991chr18_66543294_-SINEAluAluY
CAediting_1267992chr18_66543300_-SINEAluAluY
CAediting_1267993chr18_66543628_-SINEAluAluSx4
CAediting_1267994chr18_66543639_-SINEAluAluSx4
CAediting_1267995chr18_66543640_-SINEAluAluSx4
CAediting_1267996chr18_66543659_-SINEAluAluSx4
CAediting_1267997chr18_66543663_-SINEAluAluSx4
CAediting_1267998chr18_66543698_-SINEAluAluSx4
CAediting_1267999chr18_66543720_-SINEAluAluSx4
CAediting_1268000chr18_66543726_-SINEAluAluSx4
CAediting_1268001chr18_66543734_-SINEAluAluSx4
CAediting_1268002chr18_66543748_-SINEAluAluSx4
CAediting_1268003chr18_66543771_-SINEAluAluSx4
CAediting_1268004chr18_66543783_-SINEAluAluSx4
CAediting_1268005chr18_66543800_-SINEAluAluSx4
CAediting_1268006chr18_66543807_-SINEAluAluSx4
CAediting_1268007chr18_66543836_-SINEAluAluSx4
CAediting_1268008chr18_66543847_-SINEAluAluSx4
CAediting_1268009chr18_66543869_-SINEAluAluSx4
CAediting_1268010chr18_66557914_-LINEL1L1M5

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RNA A-to-I editing events in the alternative splicing sites for CDH19

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000071991.7.CDH19.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000071991.7.CDH19.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CDH19

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CDH19

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CDH19

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229415chr17_67471547_+ENSG00000071991.7ENST00000262150hsa-miR-548aa66502489665024946mer6650248866502512151-13.44
CAediting_1229415chr17_67471547_+ENSG00000071991.7ENST00000262150hsa-miR-548aa66501359665013657mer-m86650135866501382152-13.79
CAediting_1229415chr17_67471547_+ENSG00000071991.7ENST00000262150hsa-miR-548aa66504196665042016mer6650419566504219143-10.71
CAediting_1368054chr19_46709310_-ENSG00000071991.7ENST00000262150hsa-miR-320e66504146665041527mer-m86650414566504162156-19.53
CAediting_1399425chr20_1392958_-ENSG00000071991.7ENST00000262150hsa-miR-6869-5p66501514665015207mer-m86650151366501534147-19.89
CAediting_228905chr2_188297554_+ENSG00000071991.7ENST00000262150hsa-miR-561-3p66502053665020608mer-1a6650205366502074147-9.08
CAediting_573001chr7_92204086_-ENSG00000071991.7ENST00000262150hsa-miR-1285-5p66503073665030797mer-m86650307266503094146-16.27
CAediting_524911chr7_5495852_-ENSG00000071991.7ENST00000454642hsa-miR-589-3p66532477665324848mer-1a6653247766532502145-17.4
CAediting_468389chr6_31355314_-ENSG00000071991.7ENST00000262150hsa-miR-6891-5p66501482665014876mer6650147866501497156-28.65
CAediting_468389chr6_31355314_-ENSG00000071991.7ENST00000262150hsa-miR-6891-5p66501478665014858mer-1a6650147866501497156-28.65

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000071991.7ENST00000262150hsa-miR-195-3p66503010665030178mer-1a6650301066503030142-9.25
CAediting_688080chr9_63819626_+ENSG00000071991.7ENST00000262150hsa-miR-4477b66502786665027927mer-m86650278566502806140-10.83
CAediting_228905chr2_188297554_+ENSG00000071991.7ENST00000262150hsa-miR-561-3p66503578665035858mer-1a6650357866503599140-3.52
CAediting_228905chr2_188297554_+ENSG00000071991.7ENST00000262150hsa-miR-561-3p66503260665032678mer-1a6650326066503281147-9.02
CAediting_228905chr2_188297554_+ENSG00000071991.7ENST00000262150hsa-miR-561-3p66504177665041826mer6650417666504199142-15.53
CAediting_228905chr2_188297554_+ENSG00000071991.7ENST00000262150hsa-miR-561-3p66503944665039518mer-1a6650393666503957148-5.86
CAediting_228905chr2_188297554_+ENSG00000071991.7ENST00000262150hsa-miR-561-3p66503944665039518mer-1a6650394466503965145-8.44
CAediting_228905chr2_188297554_+ENSG00000071991.7ENST00000262150hsa-miR-561-3p66503936665039438mer-1a6650393666503957148-5.86

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CDH19

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for CDH19

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
SKCMCAediting_1267932chr18_66531359_-3.37766239777819e-220.58877810748777....
SKCMCAediting_1267935chr18_66531399_-1.17564334156648e-160.513270874950524....
SKCMCAediting_1267940chr18_66531470_-7.70680382105e-050.284989505328773....
SKCMCAediting_1267941chr18_66531471_-1.00550810154116e-090.412077244987918....
SKCMCAediting_1267942chr18_66531475_-5.37993236546102e-050.321479115083797....
SKCMCAediting_1267947chr18_66531518_-2.34467805174545e-060.401923217783512....
SKCMCAediting_1267948chr18_66531523_-..5.49018367154906e-250.607411889486621..
SKCMCAediting_1267949chr18_66531535_-6.53110715913424e-110.404672321615191....
SKCMCAediting_1267950chr18_66531547_-0.0002416270148417570.337397988977836....
SKCMCAediting_1267952chr18_66531575_-1.19838755975985e-050.272444211915061....
SKCMCAediting_1267954chr18_66531583_-2.72699093601138e-050.31143205046071....
SKCMCAediting_1267959chr18_66532092_-..9.78972813986024e-170.57419260678234..
SKCMCAediting_1267960chr18_66532095_-6.59782014182806e-060.3632440235576741.8430965846027e-070.415457628571317..
SKCMCAediting_1267963chr18_66532131_-0.01900943285057620.219396240655849....
SKCMCAediting_1267969chr18_66532146_-0.0004059994666668420.312720013467825....
SKCMCAediting_1267971chr18_66532204_-2.16836490568561e-050.322239026025618....
SKCMCAediting_1267972chr18_66532205_-2.24106970926674e-090.4383983310271810.0001696281838385120.28452609554093..
SKCMCAediting_1267976chr18_66532231_-1.44551266367052e-080.4295379946552740.0001322052529475910.297636532785374..

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Relation with cancer stages for CDH19

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CDH19

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CDH19

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CDH19

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource