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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: IGHV5-51 (CAeditome ID:28388) |
Gene summary for IGHV5-51 |
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Gene information | Gene symbol | IGHV5-51 | Gene ID | 28388 |
Gene name | immunoglobulin heavy variable 5-51 | |
Synonyms | IGHV551|VH | |
Cytomap | 14q32.33 | |
Type of gene | other | |
Description | immunogloblin heavy chain variable region | |
Modification date | 20210518 | |
UniProtAcc | A0A0C4DH38 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for IGHV5-51 |
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CAediting_1023138(106578761, -), CAediting_1023139(106578818, -), CAediting_1023140(106578825, -), CAediting_1023141(106578833, -), CAediting_1023142(106578838, -), CAediting_1023143(106578844, -), CAediting_1023144(106578861, -), CAediting_1023145(106578874, -), CAediting_1023146(106578896, -), CAediting_1023147(106578922, -), CAediting_1023148(106578960, -), CAediting_1023149(106578983, -), CAediting_1023150(106579004, -), CAediting_1023151(106579009, -), CAediting_1023152(106579011, -), |
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RNA editing positional annotations for IGHV5-51 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1023138 | chr14_106578761_- | exonic |
CAediting_1023139 | chr14_106578818_- | exonic |
CAediting_1023140 | chr14_106578825_- | exonic |
CAediting_1023141 | chr14_106578833_- | exonic |
CAediting_1023142 | chr14_106578838_- | exonic |
CAediting_1023143 | chr14_106578844_- | exonic |
CAediting_1023144 | chr14_106578861_- | exonic |
CAediting_1023145 | chr14_106578874_- | exonic |
CAediting_1023146 | chr14_106578896_- | exonic |
CAediting_1023147 | chr14_106578922_- | exonic |
CAediting_1023148 | chr14_106578960_- | exonic |
CAediting_1023149 | chr14_106578983_- | exonic |
CAediting_1023150 | chr14_106579004_- | exonic |
CAediting_1023151 | chr14_106579009_- | exonic |
CAediting_1023152 | chr14_106579011_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for IGHV5-51 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for IGHV5-51 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for IGHV5-51 |
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The effects of the RNA editing to the miRNA binding sites for IGHV5-51 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for IGHV5-51 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for IGHV5-51 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_1023143 | chr14_106578844_- | 0.00533566588851423 | 0.355331674800417 | . | . | . | . |
BRCA | CAediting_1023144 | chr14_106578861_- | . | . | 0.000492064495702709 | 0.443296758357221 | . | . |
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Relation with cancer stages for IGHV5-51 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for IGHV5-51 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for IGHV5-51 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for IGHV5-51 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |