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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: BCL9L (CAeditome ID:283149) |
Gene summary for BCL9L |
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Gene information | Gene symbol | BCL9L | Gene ID | 283149 |
Gene name | BCL9 like | |
Synonyms | B9L|BCL9-2|DLNB11 | |
Cytomap | 11q23.3 | |
Type of gene | protein-coding | |
Description | B-cell CLL/lymphoma 9-like proteinB cell CLL/lymphoma 9 likeB-cell lymphoma 9-like proteinBCL9-like proteinnuclear co-factor of beta-catenin signallingprotein BCL9-2 | |
Modification date | 20210518 | |
UniProtAcc | Q86UU0 | |
Context | - 33767438(BCL9/BCL9L promotes tumorigenicity through immune-dependent and independent mechanisms in triple negative breast cancer) |
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Gene | GO ID | GO term | PubMed ID |
BCL9L | GO:0008013 | B-cell CLL/lymphoma 9-like protein | 15574752 |
BCL9L | GO:0005634 | B-cell CLL/lymphoma 9-like protein | 15574752 |
BCL9L | GO:0005654 | B-cell CLL/lymphoma 9-like protein | 0000052 |
BCL9L | GO:0005730 | B-cell CLL/lymphoma 9-like protein | 0000052 |
BCL9L | GO:1990907 | B-cell CLL/lymphoma 9-like protein | 28296634 |
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RNA A-to-I events for BCL9L |
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CAediting_855388(118898247, -), CAediting_855389(118906188, -), CAediting_855390(118906192, -), CAediting_855391(118906194, -), CAediting_855392(118906721, -), CAediting_855393(118906740, -), CAediting_855394(118906741, -), CAediting_855395(118906762, -), CAediting_855396(118906765, -), CAediting_855397(118906770, -), CAediting_855398(118906771, -), CAediting_855399(118906788, -), CAediting_855400(118906795, -), CAediting_855401(118909316, -), CAediting_855402(118914964, -), |
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RNA editing positional annotations for BCL9L using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_855388 | chr11_118898247_- | UTR3 |
CAediting_855389 | chr11_118906188_- | ncRNA_intronic |
CAediting_855390 | chr11_118906192_- | ncRNA_intronic |
CAediting_855391 | chr11_118906194_- | ncRNA_intronic |
CAediting_855392 | chr11_118906721_- | ncRNA_intronic |
CAediting_855393 | chr11_118906740_- | ncRNA_intronic |
CAediting_855394 | chr11_118906741_- | ncRNA_intronic |
CAediting_855395 | chr11_118906762_- | ncRNA_intronic |
CAediting_855396 | chr11_118906765_- | ncRNA_intronic |
CAediting_855397 | chr11_118906770_- | ncRNA_intronic |
CAediting_855398 | chr11_118906771_- | ncRNA_intronic |
CAediting_855399 | chr11_118906788_- | ncRNA_intronic |
CAediting_855400 | chr11_118906795_- | ncRNA_intronic |
CAediting_855401 | chr11_118909316_- | ncRNA_intronic |
CAediting_855402 | chr11_118914964_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_855389 | chr11_118906188_- | SINE | Alu | AluJr |
CAediting_855390 | chr11_118906192_- | SINE | Alu | AluJr |
CAediting_855391 | chr11_118906194_- | SINE | Alu | AluJr |
CAediting_855392 | chr11_118906721_- | SINE | Alu | FLAM_C |
CAediting_855393 | chr11_118906740_- | SINE | Alu | FLAM_C |
CAediting_855394 | chr11_118906741_- | SINE | Alu | FLAM_C |
CAediting_855395 | chr11_118906762_- | SINE | Alu | FLAM_C |
CAediting_855396 | chr11_118906765_- | SINE | Alu | FLAM_C |
CAediting_855397 | chr11_118906770_- | SINE | Alu | FLAM_C |
CAediting_855398 | chr11_118906771_- | SINE | Alu | FLAM_C |
CAediting_855399 | chr11_118906788_- | SINE | Alu | FLAM_C |
CAediting_855400 | chr11_118906795_- | SINE | Alu | FLAM_C |
CAediting_855402 | chr11_118914964_- | SINE | Alu | AluSg7 |
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RNA A-to-I editing events in the alternative splicing sites for BCL9L |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BCL9L |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for BCL9L |
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The effects of the RNA editing to the miRNA binding sites for BCL9L |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-605-3p | 118896391 | 118896397 | 7mer-m8 | 118896390 | 118896411 | 150 | -21.02 |
CAediting_688081 | chr9_63819627_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-4477b | 118897642 | 118897648 | 7mer-m8 | 118897641 | 118897661 | 148 | -14.7 |
CAediting_1054808 | chr15_66496985_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-4512 | 118897317 | 118897322 | 6mer | 118897316 | 118897338 | 143 | -30.8 |
CAediting_1054808 | chr15_66496985_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-4512 | 118896611 | 118896617 | 7mer-m8 | 118896610 | 118896631 | 145 | -24.72 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-548aa | 118897965 | 118897971 | 7mer-m8 | 118897964 | 118897988 | 140 | -10.45 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-548aa | 118896726 | 118896732 | 7mer-m8 | 118896725 | 118896749 | 140 | -14.18 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-548aa | 118895106 | 118895112 | 7mer-m8 | 118895105 | 118895129 | 147 | -17.03 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-548aa | 118897429 | 118897435 | 7mer-m8 | 118897428 | 118897451 | 145 | -16.13 |
CAediting_1351755 | chr19_40282625_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-641 | 118897653 | 118897658 | 6mer | 118897652 | 118897675 | 142 | -16.36 |
CAediting_1368054 | chr19_46709310_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-320e | 118894734 | 118894740 | 7mer-m8 | 118894733 | 118894750 | 148 | -21.01 |
CAediting_86358 | chr1_109598906_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-197-5p | 118896478 | 118896484 | 7mer-m8 | 118896477 | 118896499 | 161 | -28.63 |
CAediting_86358 | chr1_109598906_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-197-5p | 118895542 | 118895547 | 6mer | 118895525 | 118895547 | 156 | -28.75 |
CAediting_86358 | chr1_109598906_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-197-5p | 118895526 | 118895532 | 7mer-m8 | 118895525 | 118895547 | 156 | -28.75 |
CAediting_77128 | chr1_85133844_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-4423-3p | 118897020 | 118897026 | 7mer-m8 | 118897019 | 118897038 | 145 | -12.92 |
CAediting_1399425 | chr20_1392958_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-6869-5p | 118896974 | 118896980 | 7mer-m8 | 118896973 | 118896994 | 159 | -22.32 |
CAediting_604450 | chr7_133034877_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-3654 | 118896639 | 118896645 | 7mer-m8 | 118896638 | 118896657 | 148 | -23.87 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000186174.11 | ENST00000526143 | hsa-miR-548aa | 118897965 | 118897971 | 7mer-m8 | 118897964 | 118897988 | 140 | -10.45 |
CAediting_468389 | chr6_31355314_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-6891-5p | 118897096 | 118897102 | 7mer-m8 | 118897095 | 118897114 | 152 | -24.68 |
CAediting_468389 | chr6_31355314_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-6891-5p | 118896375 | 118896380 | 6mer | 118896374 | 118896393 | 144 | -30.41 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-320e | 118896084 | 118896090 | 7mer-m8 | 118896083 | 118896100 | 150 | -16.3 |
CAediting_1054808 | chr15_66496985_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-4512 | 118897435 | 118897440 | 6mer | 118897434 | 118897452 | 140 | -26.71 |
CAediting_1524209 | chrX_134546392_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-503-5p | 118897400 | 118897406 | 7mer-m8 | 118897399 | 118897421 | 146 | -23.31 |
CAediting_1524209 | chrX_134546392_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-503-5p | 118897502 | 118897507 | 6mer | 118897501 | 118897520 | 144 | -25.3 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-548aa | 118896242 | 118896248 | 7mer-m8 | 118896241 | 118896265 | 155 | -10.06 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-548aa | 118896242 | 118896248 | 7mer-m8 | 118896241 | 118896265 | 155 | -10.06 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-548aa | 118896242 | 118896248 | 7mer-m8 | 118896241 | 118896265 | 155 | -10.06 |
CAediting_748296 | chr10_51299626_+ | ENSG00000186174.11 | ENST00000334801 | hsa-miR-605-3p | 118894309 | 118894315 | 7mer-m8 | 118894308 | 118894329 | 143 | -12.03 |
CAediting_468389 | chr6_31355314_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-6891-5p | 118896877 | 118896882 | 6mer | 118896863 | 118896882 | 144 | -22.7 |
CAediting_468389 | chr6_31355314_- | ENSG00000186174.11 | ENST00000334801 | hsa-miR-6891-5p | 118895587 | 118895593 | 7mer-m8 | 118895586 | 118895606 | 141 | -16.08 |
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The effects of the RNA editing to the stability of the RNA structures for BCL9L |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for BCL9L |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LUAD | CAediting_855388 | chr11_118898247_- | 6.39659995776974e-07 | 0.520325053988143 | . | . | . | . |
LUSC | CAediting_855388 | chr11_118898247_- | 0.00710488430420657 | 0.368993833305018 | . | . | . | . |
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Relation with cancer stages for BCL9L |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
LUAD | pathologic_stage | CAediting_855388 | chr11_118898247_- | 0.0406297052061856 | -0.228014642295274 |
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Relation with survival for BCL9L |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for BCL9L |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for BCL9L |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
BCL9L | C0266642 | Situs ambiguus | 1 | GENOMICS_ENGLAND |