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Editing gene: NEAT1 (CAeditome ID:283131)

Gene summary for NEAT1

Gene summary

Gene information	Gene symbol	NEAT1
	Gene ID	283131
	Gene name	nuclear paraspeckle assembly transcript 1
	Synonyms	LINC00084\|NCRNA00084\|TncRNA\|VINC
	Cytomap	11q13.1
	Type of gene	ncRNA
	Description	MENepsilon/betalong intergenic non-protein coding RNA 84nuclear enriched abundant transcript 1nuclear paraspeckle assembly transcript 1 (non-protein coding)trophoblast MHC class II suppressortrophoblast-derived noncoding RNAvirus inducible non-codin
	Modification date	20210531
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for NEAT1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000245532.5

RNA A-to-I editing events in Cancer.

CAediting_824061(65426311, +), CAediting_824062(65439410, +), CAediting_824063(65439419, +), CAediting_824064(65439427, +), CAediting_824065(65439433, +), CAediting_824066(65439476, +), CAediting_824067(65439504, +), CAediting_824068(65439565, +), CAediting_824069(65439566, +), CAediting_824070(65439588, +), CAediting_824071(65439660, +), CAediting_824072(65439993, +), CAediting_824073(65440001, +), CAediting_824074(65440007, +), CAediting_824075(65440028, +), CAediting_824076(65440047, +), CAediting_824077(65440048, +), CAediting_824078(65440055, +), CAediting_824079(65440056, +), CAediting_824080(65440219, +), CAediting_824081(65440327, +), CAediting_824082(65440328, +), CAediting_824083(65440349, +), CAediting_824084(65440363, +), CAediting_824085(65440368, +), CAediting_824086(65440394, +), CAediting_824087(65440395, +), CAediting_824088(65440402, +), CAediting_824089(65440478, +), CAediting_824090(65440579, +), CAediting_824091(65440606, +), CAediting_824092(65440612, +), CAediting_824093(65440628, +), CAediting_824094(65440661, +), CAediting_824095(65440665, +), CAediting_824096(65440698, +), CAediting_824097(65440702, +), CAediting_824098(65440724, +), CAediting_824099(65440747, +), CAediting_824100(65440768, +), CAediting_824101(65440771, +), CAediting_824102(65440782, +), CAediting_824103(65440788, +), CAediting_824104(65440800, +), CAediting_824105(65440813, +), CAediting_824106(65440825, +), CAediting_824107(65440830, +), CAediting_824108(65441344, +), CAediting_824109(65441347, +), CAediting_824110(65441384, +), CAediting_824111(65441385, +), CAediting_824112(65441386, +), CAediting_824113(65441399, +), CAediting_824114(65441403, +), CAediting_824115(65441417, +), CAediting_824116(65441418, +), CAediting_824117(65441425, +), CAediting_824118(65441426, +), CAediting_824119(65441427, +), CAediting_824120(65441439, +), CAediting_824121(65441441, +), CAediting_824122(65441448, +), CAediting_824123(65441461, +), CAediting_824124(65441945, +), CAediting_824125(65442591, +), CAediting_824126(65442601, +), CAediting_824127(65442619, +), CAediting_824128(65442626, +), CAediting_824129(65442627, +), CAediting_824130(65442643, +), CAediting_824131(65442653, +), CAediting_824132(65442662, +), CAediting_824133(65442665, +), CAediting_824134(65442670, +), CAediting_824135(65442678, +), CAediting_824136(65442684, +), CAediting_824137(65442694, +), CAediting_824138(65442701, +), CAediting_824139(65442702, +), CAediting_824140(65442703, +), CAediting_824141(65442704, +), CAediting_824142(65442709, +), CAediting_824143(65442724, +), CAediting_824144(65442751, +), CAediting_824145(65442759, +), CAediting_824146(65442843, +), CAediting_824147(65442850, +),

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RNA editing positional annotations for NEAT1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_824061	chr11_65426311_+	ncRNA_exonic
CAediting_824062	chr11_65439410_+	ncRNA_exonic
CAediting_824063	chr11_65439419_+	ncRNA_exonic
CAediting_824064	chr11_65439427_+	ncRNA_exonic
CAediting_824065	chr11_65439433_+	ncRNA_exonic
CAediting_824066	chr11_65439476_+	ncRNA_exonic
CAediting_824067	chr11_65439504_+	ncRNA_exonic
CAediting_824068	chr11_65439565_+	ncRNA_exonic
CAediting_824069	chr11_65439566_+	ncRNA_exonic
CAediting_824070	chr11_65439588_+	ncRNA_exonic
CAediting_824071	chr11_65439660_+	ncRNA_exonic
CAediting_824072	chr11_65439993_+	ncRNA_exonic
CAediting_824073	chr11_65440001_+	ncRNA_exonic
CAediting_824074	chr11_65440007_+	ncRNA_exonic
CAediting_824075	chr11_65440028_+	ncRNA_exonic
CAediting_824076	chr11_65440047_+	ncRNA_exonic
CAediting_824077	chr11_65440048_+	ncRNA_exonic
CAediting_824078	chr11_65440055_+	ncRNA_exonic
CAediting_824079	chr11_65440056_+	ncRNA_exonic
CAediting_824080	chr11_65440219_+	ncRNA_exonic
CAediting_824081	chr11_65440327_+	ncRNA_exonic
CAediting_824082	chr11_65440328_+	ncRNA_exonic
CAediting_824083	chr11_65440349_+	ncRNA_exonic
CAediting_824084	chr11_65440363_+	ncRNA_exonic
CAediting_824085	chr11_65440368_+	ncRNA_exonic
CAediting_824086	chr11_65440394_+	ncRNA_exonic
CAediting_824087	chr11_65440395_+	ncRNA_exonic
CAediting_824088	chr11_65440402_+	ncRNA_exonic
CAediting_824089	chr11_65440478_+	ncRNA_exonic
CAediting_824090	chr11_65440579_+	ncRNA_exonic
CAediting_824091	chr11_65440606_+	ncRNA_exonic
CAediting_824092	chr11_65440612_+	ncRNA_exonic
CAediting_824093	chr11_65440628_+	ncRNA_exonic
CAediting_824094	chr11_65440661_+	ncRNA_exonic
CAediting_824095	chr11_65440665_+	ncRNA_exonic
CAediting_824096	chr11_65440698_+	ncRNA_exonic
CAediting_824097	chr11_65440702_+	ncRNA_exonic
CAediting_824098	chr11_65440724_+	ncRNA_exonic
CAediting_824099	chr11_65440747_+	ncRNA_exonic
CAediting_824100	chr11_65440768_+	ncRNA_exonic
CAediting_824101	chr11_65440771_+	ncRNA_exonic
CAediting_824102	chr11_65440782_+	ncRNA_exonic
CAediting_824103	chr11_65440788_+	ncRNA_exonic
CAediting_824104	chr11_65440800_+	ncRNA_exonic
CAediting_824105	chr11_65440813_+	ncRNA_exonic
CAediting_824106	chr11_65440825_+	ncRNA_exonic
CAediting_824107	chr11_65440830_+	ncRNA_exonic
CAediting_824108	chr11_65441344_+	ncRNA_exonic
CAediting_824109	chr11_65441347_+	ncRNA_exonic
CAediting_824110	chr11_65441384_+	ncRNA_exonic
CAediting_824111	chr11_65441385_+	ncRNA_exonic
CAediting_824112	chr11_65441386_+	ncRNA_exonic
CAediting_824113	chr11_65441399_+	ncRNA_exonic
CAediting_824114	chr11_65441403_+	ncRNA_exonic
CAediting_824115	chr11_65441417_+	ncRNA_exonic
CAediting_824116	chr11_65441418_+	ncRNA_exonic
CAediting_824117	chr11_65441425_+	ncRNA_exonic
CAediting_824118	chr11_65441426_+	ncRNA_exonic
CAediting_824119	chr11_65441427_+	ncRNA_exonic
CAediting_824120	chr11_65441439_+	ncRNA_exonic
CAediting_824121	chr11_65441441_+	ncRNA_exonic
CAediting_824122	chr11_65441448_+	ncRNA_exonic
CAediting_824123	chr11_65441461_+	ncRNA_exonic
CAediting_824124	chr11_65441945_+	ncRNA_exonic
CAediting_824125	chr11_65442591_+	ncRNA_exonic
CAediting_824126	chr11_65442601_+	ncRNA_exonic
CAediting_824127	chr11_65442619_+	ncRNA_exonic
CAediting_824128	chr11_65442626_+	ncRNA_exonic
CAediting_824129	chr11_65442627_+	ncRNA_exonic
CAediting_824130	chr11_65442643_+	ncRNA_exonic
CAediting_824131	chr11_65442653_+	ncRNA_exonic
CAediting_824132	chr11_65442662_+	ncRNA_exonic
CAediting_824133	chr11_65442665_+	ncRNA_exonic
CAediting_824134	chr11_65442670_+	ncRNA_exonic
CAediting_824135	chr11_65442678_+	ncRNA_exonic
CAediting_824136	chr11_65442684_+	ncRNA_exonic
CAediting_824137	chr11_65442694_+	ncRNA_exonic
CAediting_824138	chr11_65442701_+	ncRNA_exonic
CAediting_824139	chr11_65442702_+	ncRNA_exonic
CAediting_824140	chr11_65442703_+	ncRNA_exonic
CAediting_824141	chr11_65442704_+	ncRNA_exonic
CAediting_824142	chr11_65442709_+	ncRNA_exonic
CAediting_824143	chr11_65442724_+	ncRNA_exonic
CAediting_824144	chr11_65442751_+	ncRNA_exonic
CAediting_824145	chr11_65442759_+	ncRNA_exonic
CAediting_824146	chr11_65442843_+	ncRNA_exonic
CAediting_824147	chr11_65442850_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_824062	chr11_65439410_+	SINE	Alu	AluSz6
CAediting_824063	chr11_65439419_+	SINE	Alu	AluSz6
CAediting_824064	chr11_65439427_+	SINE	Alu	AluSz6
CAediting_824065	chr11_65439433_+	SINE	Alu	AluSz6
CAediting_824066	chr11_65439476_+	SINE	Alu	AluSz6
CAediting_824067	chr11_65439504_+	SINE	Alu	AluSz6
CAediting_824068	chr11_65439565_+	SINE	Alu	AluSz6
CAediting_824069	chr11_65439566_+	SINE	Alu	AluSz6
CAediting_824070	chr11_65439588_+	SINE	Alu	AluSz6
CAediting_824071	chr11_65439660_+	SINE	Alu	AluSz6
CAediting_824072	chr11_65439993_+	SINE	Alu	FLAM_C
CAediting_824073	chr11_65440001_+	SINE	Alu	FLAM_C
CAediting_824074	chr11_65440007_+	SINE	Alu	FLAM_C
CAediting_824075	chr11_65440028_+	SINE	Alu	FLAM_C
CAediting_824076	chr11_65440047_+	SINE	Alu	FLAM_C
CAediting_824077	chr11_65440048_+	SINE	Alu	FLAM_C
CAediting_824078	chr11_65440055_+	SINE	Alu	FLAM_C
CAediting_824079	chr11_65440056_+	SINE	Alu	FLAM_C
CAediting_824081	chr11_65440327_+	SINE	Alu	AluJo
CAediting_824082	chr11_65440328_+	SINE	Alu	AluJo
CAediting_824083	chr11_65440349_+	SINE	Alu	AluJo
CAediting_824084	chr11_65440363_+	SINE	Alu	AluJo
CAediting_824085	chr11_65440368_+	SINE	Alu	AluJo
CAediting_824086	chr11_65440394_+	SINE	Alu	AluJo
CAediting_824087	chr11_65440395_+	SINE	Alu	AluJo
CAediting_824088	chr11_65440402_+	SINE	Alu	AluJo
CAediting_824089	chr11_65440478_+	SINE	Alu	AluJo
CAediting_824091	chr11_65440606_+	SINE	Alu	AluSx3
CAediting_824092	chr11_65440612_+	SINE	Alu	AluSx3
CAediting_824093	chr11_65440628_+	SINE	Alu	AluSx3
CAediting_824094	chr11_65440661_+	SINE	Alu	AluSx3
CAediting_824095	chr11_65440665_+	SINE	Alu	AluSx3
CAediting_824096	chr11_65440698_+	SINE	Alu	AluSx3
CAediting_824097	chr11_65440702_+	SINE	Alu	AluSx3
CAediting_824098	chr11_65440724_+	SINE	Alu	AluSx3
CAediting_824099	chr11_65440747_+	SINE	Alu	AluSx3
CAediting_824100	chr11_65440768_+	SINE	Alu	AluSx3
CAediting_824101	chr11_65440771_+	SINE	Alu	AluSx3
CAediting_824102	chr11_65440782_+	SINE	Alu	AluSx3
CAediting_824103	chr11_65440788_+	SINE	Alu	AluSx3
CAediting_824104	chr11_65440800_+	SINE	Alu	AluSx3
CAediting_824105	chr11_65440813_+	SINE	Alu	AluSx3
CAediting_824106	chr11_65440825_+	SINE	Alu	AluSx3
CAediting_824107	chr11_65440830_+	SINE	Alu	AluSx3
CAediting_824108	chr11_65441344_+	SINE	Alu	AluJo
CAediting_824109	chr11_65441347_+	SINE	Alu	AluJo
CAediting_824110	chr11_65441384_+	SINE	Alu	AluJo
CAediting_824111	chr11_65441385_+	SINE	Alu	AluJo
CAediting_824112	chr11_65441386_+	SINE	Alu	AluJo
CAediting_824113	chr11_65441399_+	SINE	Alu	AluJo
CAediting_824114	chr11_65441403_+	SINE	Alu	AluJo
CAediting_824115	chr11_65441417_+	SINE	Alu	AluJo
CAediting_824116	chr11_65441418_+	SINE	Alu	AluJo
CAediting_824117	chr11_65441425_+	SINE	Alu	AluJo
CAediting_824118	chr11_65441426_+	SINE	Alu	AluJo
CAediting_824119	chr11_65441427_+	SINE	Alu	AluJo
CAediting_824120	chr11_65441439_+	SINE	Alu	AluJo
CAediting_824121	chr11_65441441_+	SINE	Alu	AluJo
CAediting_824122	chr11_65441448_+	SINE	Alu	AluJo
CAediting_824123	chr11_65441461_+	SINE	Alu	AluJo
CAediting_824127	chr11_65442619_+	SINE	Alu	AluSx4
CAediting_824128	chr11_65442626_+	SINE	Alu	AluSx4
CAediting_824129	chr11_65442627_+	SINE	Alu	AluSx4
CAediting_824130	chr11_65442643_+	SINE	Alu	AluSx4
CAediting_824131	chr11_65442653_+	SINE	Alu	AluSx4
CAediting_824132	chr11_65442662_+	SINE	Alu	AluSx4
CAediting_824133	chr11_65442665_+	SINE	Alu	AluSx4
CAediting_824134	chr11_65442670_+	SINE	Alu	AluSx4
CAediting_824135	chr11_65442678_+	SINE	Alu	AluSx4
CAediting_824136	chr11_65442684_+	SINE	Alu	AluSx4
CAediting_824137	chr11_65442694_+	SINE	Alu	AluSx4
CAediting_824138	chr11_65442701_+	SINE	Alu	AluSx4
CAediting_824139	chr11_65442702_+	SINE	Alu	AluSx4
CAediting_824140	chr11_65442703_+	SINE	Alu	AluSx4
CAediting_824141	chr11_65442704_+	SINE	Alu	AluSx4
CAediting_824142	chr11_65442709_+	SINE	Alu	AluSx4
CAediting_824143	chr11_65442724_+	SINE	Alu	AluSx4
CAediting_824144	chr11_65442751_+	SINE	Alu	AluSx4
CAediting_824145	chr11_65442759_+	SINE	Alu	AluSx4
CAediting_824146	chr11_65442843_+	SINE	Alu	AluSx4
CAediting_824147	chr11_65442850_+	SINE	Alu	AluSx4

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RNA A-to-I editing events in the alternative splicing sites for NEAT1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000245532.5.NEAT1.

Correlation between RNA A-to-I editing and PSI for ENSG00000245532.5.NEAT1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NEAT1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

HNSC.CAediting_824110.ENSG00000245532.NEAT1.png
Soverview

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Protein coding region RNA A-to-I editings for NEAT1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for NEAT1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_824062	chr11_65439410_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-10a-5p	65439408	65439413	6mer	65439392	65439414	155	-23.53
CAediting_824062	chr11_65439410_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-10b-5p	65439408	65439413	6mer	65439392	65439414	155	-23.53
CAediting_824062	chr11_65439410_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3620-3p	65439408	65439414	7mer-m8	65439393	65439415	154	-24.19
CAediting_824072	chr11_65439993_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3622a-5p	65439992	65439998	7mer-m8	65439978	65439999	148	-24.75
CAediting_824073	chr11_65440001_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-140-3p	65439997	65440003	7mer-m8	65439997	65440018	142	-21.93
CAediting_824077	chr11_65440048_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3176	65440042	65440048	7mer-m8	65440031	65440049	149	-18.92
CAediting_824077	chr11_65440048_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3922-3p	65440042	65440048	7mer-m8	65440029	65440049	154	-22.05
CAediting_824079	chr11_65440056_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-12113	65440050	65440056	7mer-m8	65440034	65440057	154	-22.89
CAediting_824079	chr11_65440056_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4539	65440050	65440056	7mer-m8	65440033	65440057	155	-20.01
CAediting_824109	chr11_65441347_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6509-3p	65441344	65441349	6mer	65441329	65441350	140	-10.68
CAediting_824111	chr11_65441385_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4329	65441379	65441386	8mer-1a	65441370	65441386	153	-18.14
CAediting_824113	chr11_65441399_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3622a-3p	65441396	65441403	8mer-1a	65441383	65441403	143	-15.98
CAediting_824113	chr11_65441399_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3622b-3p	65441396	65441403	8mer-1a	65441384	65441403	153	-20.84
CAediting_824116	chr11_65441418_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3929	65441415	65441421	7mer-m8	65441399	65441422	152	-22.94
CAediting_824116	chr11_65441418_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4478	65441415	65441421	7mer-m8	65441406	65441422	159	-26.98
CAediting_824116	chr11_65441418_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4663	65441413	65441419	7mer-m8	65441397	65441420	140	-15.95
CAediting_824116	chr11_65441418_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-485-5p	65441416	65441422	7mer-m8	65441401	65441423	151	-18.8
CAediting_824116	chr11_65441418_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6884-5p	65441416	65441422	7mer-m8	65441402	65441423	163	-21.65
CAediting_824116	chr11_65441418_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-8077	65441414	65441419	6mer	65441399	65441420	144	-27.63
CAediting_824118	chr11_65441426_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-326	65441422	65441428	7mer-m8	65441410	65441429	141	-13.25
CAediting_824118	chr11_65441426_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-330-5p	65441422	65441428	7mer-m8	65441408	65441429	140	-17.55
CAediting_824118	chr11_65441426_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4314	65441421	65441427	7mer-m8	65441411	65441428	144	-20.3
CAediting_824118	chr11_65441426_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-514a-5p	65441423	65441429	7mer-m8	65441407	65441430	150	-18.63
CAediting_824119	chr11_65441427_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3189-3p	65441422	65441428	7mer-m8	65441406	65441429	148	-25.6
CAediting_824119	chr11_65441427_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6813-3p	65441423	65441429	7mer-m8	65441410	65441430	140	-10.68
CAediting_824121	chr11_65441441_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-100-5p	65441438	65441444	7mer-m8	65441423	65441445	166	-23.64
CAediting_824121	chr11_65441441_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-99a-5p	65441438	65441444	7mer-m8	65441423	65441445	162	-23.78
CAediting_824121	chr11_65441441_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-99b-5p	65441438	65441444	7mer-m8	65441423	65441445	162	-29.13
CAediting_824127	chr11_65442619_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4634	65442617	65442623	7mer-m8	65442606	65442624	150	-21.12
CAediting_824129	chr11_65442627_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4432	65442625	65442632	8mer-1a	65442613	65442632	143	-15.59
CAediting_824129	chr11_65442627_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-499a-5p	65442626	65442632	7mer-m8	65442612	65442633	151	-16.79
CAediting_824129	chr11_65442627_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-510-5p	65442622	65442628	7mer-m8	65442609	65442629	154	-22.09
CAediting_824140	chr11_65442703_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-193a-5p	65442701	65442707	7mer-m8	65442683	65442708	141	-21.52
CAediting_824140	chr11_65442703_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200c-5p	65442699	65442705	7mer-m8	65442685	65442706	145	-14.3
CAediting_824140	chr11_65442703_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-550a-3p	65442699	65442705	7mer-m8	65442685	65442706	143	-16.71
CAediting_824061	chr11_65426311_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-452-5p	65426306	65426312	7mer-m8	65426292	65426313	155	-15.74
CAediting_824061	chr11_65426311_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4676-3p	65426306	65426312	7mer-m8	65426291	65426313	148	-11.4
CAediting_824061	chr11_65426311_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-892c-3p	65426306	65426312	7mer-m8	65426288	65426313	150	-13.32
CAediting_824064	chr11_65439427_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-513b-5p	65439422	65439428	7mer-m8	65439408	65439429	156	-17.72
CAediting_824064	chr11_65439427_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-638	65439427	65439433	7mer-1a	65439409	65439433	155	-35.27
CAediting_824065	chr11_65439433_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-371a-3p	65439432	65439438	7mer-m8	65439419	65439439	146	-18.38
CAediting_824066	chr11_65439476_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6849-3p	65439471	65439477	7mer-m8	65439450	65439478	146	-28.97
CAediting_824066	chr11_65439476_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7977	65439473	65439479	7mer-m8	65439463	65439480	151	-20.11
CAediting_824070	chr11_65439588_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6849-3p	65439582	65439588	7mer-m8	65439567	65439589	141	-16.5
CAediting_824071	chr11_65439660_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5588-3p	65439658	65439664	7mer-m8	65439645	65439665	151	-19.79
CAediting_824074	chr11_65440007_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-371a-3p	65440006	65440012	7mer-m8	65439991	65440013	140	-14.62
CAediting_824076	chr11_65440047_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3615	65440045	65440051	7mer-m8	65440032	65440052	148	-22.32
CAediting_824080	chr11_65440219_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4704-5p	65440217	65440222	6mer	65440198	65440223	141	-17.51
CAediting_824082	chr11_65440328_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3176	65440322	65440328	7mer-m8	65440311	65440329	140	-14.32
CAediting_824082	chr11_65440328_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3922-3p	65440322	65440328	7mer-m8	65440306	65440329	155	-16.85
CAediting_824083	chr11_65440349_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-140-3p	65440345	65440351	7mer-m8	65440329	65440352	152	-27.5
CAediting_824092	chr11_65440612_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3176	65440606	65440612	7mer-m8	65440595	65440613	140	-15.89
CAediting_824092	chr11_65440612_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3620-3p	65440610	65440616	7mer-m8	65440595	65440617	154	-24.48
CAediting_824092	chr11_65440612_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3922-3p	65440606	65440612	7mer-m8	65440596	65440613	142	-18.61
CAediting_824094	chr11_65440661_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4716-5p	65440656	65440662	7mer-m8	65440642	65440663	140	-11.3
CAediting_824095	chr11_65440665_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-23a-5p	65440664	65440670	7mer-m8	65440649	65440671	144	-21.43
CAediting_824095	chr11_65440665_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-23b-5p	65440664	65440670	7mer-m8	65440651	65440671	148	-16.46
CAediting_824096	chr11_65440698_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3190-5p	65440697	65440703	7mer-m8	65440685	65440704	143	-16.24
CAediting_824096	chr11_65440698_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548s	65440696	65440702	7mer-m8	65440682	65440703	143	-10.65
CAediting_824097	chr11_65440702_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-941	65440699	65440705	7mer-m8	65440684	65440706	146	-24.63
CAediting_824099	chr11_65440747_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1913	65440746	65440752	7mer-m8	65440732	65440753	147	-22.1
CAediting_824099	chr11_65440747_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6849-3p	65440741	65440747	7mer-m8	65440727	65440748	140	-18.03
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-331-3p	65440766	65440772	7mer-m8	65440753	65440773	145	-20.27
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4292	65440765	65440771	7mer-m8	65440754	65440772	143	-22.58
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4313	65440768	65440774	7mer-m8	65440756	65440775	150	-21.48
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6791-5p	65440765	65440771	7mer-m8	65440751	65440772	146	-26.69
CAediting_824102	chr11_65440782_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4772-3p	65440779	65440785	7mer-m8	65440764	65440786	158	-20.38
CAediting_824104	chr11_65440800_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-652-3p	65440798	65440804	7mer-m8	65440785	65440805	143	-18.89
CAediting_824105	chr11_65440813_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4743-5p	65440810	65440816	7mer-m8	65440795	65440817	147	-21.47
CAediting_824112	chr11_65441386_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-100-3p	65441383	65441389	7mer-m8	65441369	65441390	142	-11.78
CAediting_824112	chr11_65441386_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4538	65441383	65441388	6mer	65441366	65441389	145	-26.45
CAediting_824114	chr11_65441403_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1255b-2-3p	65441398	65441404	7mer-m8	65441384	65441405	140	-9.49
CAediting_824114	chr11_65441403_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4751	65441402	65441408	7mer-m8	65441386	65441409	158	-25.3
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6771-5p	65441420	65441427	8mer-1a	65441404	65441427	151	-28.84
CAediting_824122	chr11_65441448_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-663b	65441447	65441453	7mer-m8	65441429	65441454	149	-26.08
CAediting_824124	chr11_65441945_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6877-5p	65441943	65441949	7mer-m8	65441928	65441950	154	-25.39
CAediting_824128	chr11_65442626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3156-5p	65442626	65442632	7mer-1a	65442611	65442632	145	-21
CAediting_824130	chr11_65442643_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-361-3p	65442639	65442644	6mer	65442619	65442645	141	-24.39
CAediting_824130	chr11_65442643_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3943	65442641	65442647	7mer-m8	65442625	65442648	142	-19.92
CAediting_824137	chr11_65442694_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-193a-3p	65442689	65442696	8mer-1a	65442675	65442696	140	-11.84
CAediting_824137	chr11_65442694_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-193b-3p	65442689	65442696	8mer-1a	65442675	65442696	140	-11.93
CAediting_824137	chr11_65442694_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3190-5p	65442688	65442694	7mer-m8	65442676	65442695	147	-17.34
CAediting_824139	chr11_65442702_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-182-3p	65442700	65442706	7mer-m8	65442684	65442707	144	-12.27
CAediting_824143	chr11_65442724_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4328	65442718	65442724	7mer-m8	65442709	65442725	142	-7.8
CAediting_824143	chr11_65442724_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6516-5p	65442721	65442728	8mer-1a	65442707	65442728	147	-15.61
CAediting_824144	chr11_65442751_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4783-5p	65442746	65442752	7mer-m8	65442733	65442753	148	-24.71
CAediting_824145	chr11_65442759_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-140-3p	65442755	65442761	7mer-m8	65442742	65442762	156	-23.53
CAediting_824146	chr11_65442843_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-143-5p	65442840	65442846	7mer-m8	65442826	65442847	165	-27.64
CAediting_824146	chr11_65442843_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5693	65442837	65442843	7mer-m8	65442824	65442844	143	-18.7
CAediting_824147	chr11_65442850_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4743-5p	65442847	65442853	7mer-m8	65442832	65442854	147	-21.02
CAediting_824142	chr11_65442709_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-483-5p	65442706	65442712	7mer-m8	65442692	65442713	140	-14.01
CAediting_824087	chr11_65440395_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-12113	65440389	65440395	7mer-m8	65440378	65440396	152	-21.73
CAediting_824087	chr11_65440395_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-345-3p	65440391	65440397	7mer-m8	65440375	65440398	151	-29.81
CAediting_824087	chr11_65440395_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4539	65440389	65440395	7mer-m8	65440371	65440396	155	-22.14
CAediting_824087	chr11_65440395_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6779-3p	65440393	65440399	7mer-m8	65440379	65440400	153	-22.47
CAediting_824087	chr11_65440395_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7976	65440392	65440398	7mer-m8	65440382	65440399	158	-21.01

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_824088	chr11_65440402_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1184	65440397	65440403	7mer-m8	65440384	65440404	154	-20.39
CAediting_824071	chr11_65439660_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1264	65439660	65439665	6mer	65439643	65439666	149	-19.67
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1273h-5p	65441419	65441426	8mer-1a	65441406	65441426	149	-16.7
CAediting_824137	chr11_65442694_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1279	65442692	65442698	7mer-m8	65442683	65442699	140	-8.58
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1281	65440769	65440775	7mer-m8	65440760	65440776	145	-17.85
CAediting_824123	chr11_65441461_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1285-3p	65441456	65441462	7mer-m8	65441445	65441463	143	-19.31
CAediting_824136	chr11_65442684_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-133a-5p	65442680	65442686	7mer-m8	65442669	65442687	145	-15.52
CAediting_824136	chr11_65442684_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-138-5p	65442681	65442686	6mer	65442665	65442687	145	-24.08
CAediting_824073	chr11_65440001_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-139-5p	65439997	65440002	6mer	65439996	65440017	143	-20.23
CAediting_824083	chr11_65440349_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-139-5p	65440345	65440350	6mer	65440330	65440351	143	-31.11
CAediting_824091	chr11_65440606_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-150-5p	65440601	65440607	7mer-m8	65440588	65440608	149	-17.28
CAediting_824130	chr11_65442643_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-150-5p	65442638	65442644	7mer-m8	65442624	65442645	140	-15.8
CAediting_824140	chr11_65442703_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-193b-5p	65442702	65442709	8mer-1a	65442688	65442709	146	-17.17
CAediting_824141	chr11_65442704_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-193b-5p	65442702	65442709	8mer-1a	65442688	65442709	146	-17.17
CAediting_824075	chr11_65440028_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1976	65440026	65440032	7mer-m8	65440013	65440033	149	-26.06
CAediting_824092	chr11_65440612_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-212-5p	65440608	65440614	7mer-m8	65440594	65440615	152	-19.84
CAediting_824140	chr11_65442703_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-2681-5p	65442698	65442704	7mer-m8	65442681	65442705	152	-20.57
CAediting_824138	chr11_65442701_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-2681-5p	65442698	65442704	7mer-m8	65442681	65442705	152	-20.57
CAediting_824139	chr11_65442702_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-2681-5p	65442698	65442704	7mer-m8	65442681	65442705	152	-20.57
CAediting_824141	chr11_65442704_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-2681-5p	65442698	65442704	7mer-m8	65442681	65442705	152	-20.57
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-30b-3p	65441419	65441426	8mer-1a	65441405	65441426	152	-17.74
CAediting_824067	chr11_65439504_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-31-3p	65439500	65439506	7mer-m8	65439486	65439507	140	-16.28
CAediting_824083	chr11_65440349_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3169	65440349	65440355	7mer-1a	65440337	65440355	144	-23.46
CAediting_824141	chr11_65442704_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3170	65442703	65442709	7mer-m8	65442689	65442710	144	-13.93
CAediting_824142	chr11_65442709_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3170	65442703	65442709	7mer-m8	65442689	65442710	144	-13.93
CAediting_824113	chr11_65441399_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3614-5p	65441397	65441403	7mer-1a	65441380	65441403	147	-19.2
CAediting_824105	chr11_65440813_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3652	65440810	65440816	7mer-m8	65440801	65440817	153	-18.69
CAediting_824147	chr11_65442850_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3652	65442847	65442853	7mer-m8	65442835	65442854	152	-21.67
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3689a-3p	65441419	65441426	8mer-1a	65441406	65441426	151	-20.93
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3689b-3p	65441419	65441426	8mer-1a	65441406	65441426	151	-20.77
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3689c	65441419	65441426	8mer-1a	65441406	65441426	151	-20.77
CAediting_824115	chr11_65441417_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-377-5p	65441416	65441422	7mer-m8	65441403	65441423	144	-14.02
CAediting_824116	chr11_65441418_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-377-5p	65441416	65441422	7mer-m8	65441403	65441423	144	-14.02
CAediting_824090	chr11_65440579_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3977	65440573	65440579	7mer-m8	65440558	65440580	153	-14.43
CAediting_824146	chr11_65442843_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4280	65442841	65442847	7mer-m8	65442828	65442848	147	-16.63
CAediting_824122	chr11_65441448_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4284	65441445	65441452	8mer-1a	65441435	65441452	151	-19.56
CAediting_824104	chr11_65440800_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4466	65440796	65440803	8mer-1a	65440785	65440803	151	-23.54
CAediting_824123	chr11_65441461_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4505	65441458	65441464	7mer-m8	65441448	65441465	145	-22.68
CAediting_824074	chr11_65440007_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4731-5p	65440004	65440010	7mer-1a	65439990	65440010	142	-22.24
CAediting_824096	chr11_65440698_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4735-5p	65440693	65440699	7mer-m8	65440679	65440700	140	-4.28
CAediting_824083	chr11_65440349_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4759	65440348	65440355	8mer-1a	65440335	65440355	145	-15.05
CAediting_824136	chr11_65442684_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4774-5p	65442679	65442685	7mer-m8	65442665	65442686	141	-9.41
CAediting_824096	chr11_65440698_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4775	65440692	65440698	7mer-m8	65440674	65440699	154	-7.86
CAediting_824084	chr11_65440363_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4777-3p	65440361	65440368	8mer-1a	65440346	65440368	147	-15.8
CAediting_824096	chr11_65440698_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4794	65440697	65440703	7mer-m8	65440683	65440704	140	-12.3
CAediting_824097	chr11_65440702_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4794	65440697	65440703	7mer-m8	65440683	65440704	140	-12.3
CAediting_824129	chr11_65442627_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-506-5p	65442622	65442628	7mer-m8	65442608	65442629	151	-16.32
CAediting_824128	chr11_65442626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-506-5p	65442622	65442628	7mer-m8	65442608	65442629	151	-16.32
CAediting_824065	chr11_65439433_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5089-5p	65439427	65439433	7mer-m8	65439412	65439434	148	-14.55
CAediting_824065	chr11_65439433_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-512-3p	65439432	65439438	7mer-m8	65439419	65439439	149	-14.47
CAediting_824074	chr11_65440007_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-512-3p	65440006	65440012	7mer-m8	65439992	65440013	145	-15.69
CAediting_824135	chr11_65442678_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5681b	65442677	65442684	8mer-1a	65442664	65442684	146	-15.45
CAediting_824106	chr11_65440825_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5691	65440824	65440831	8mer-1a	65440811	65440831	147	-19.02
CAediting_824107	chr11_65440830_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5691	65440824	65440831	8mer-1a	65440811	65440831	147	-19.02
CAediting_824105	chr11_65440813_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5787	65440811	65440816	6mer	65440797	65440817	141	-25.31
CAediting_824123	chr11_65441461_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-5787	65441458	65441464	7mer-m8	65441447	65441465	150	-27.35
CAediting_824123	chr11_65441461_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-612	65441456	65441462	7mer-m8	65441440	65441463	149	-25.9
CAediting_824125	chr11_65442591_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-627-3p	65442586	65442593	8mer-1a	65442574	65442593	155	-10.39
CAediting_824132	chr11_65442662_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-640	65442656	65442662	7mer-m8	65442647	65442663	154	-24.81
CAediting_824068	chr11_65439565_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6504-3p	65439561	65439568	8mer-1a	65439544	65439568	148	-13.97
CAediting_824069	chr11_65439566_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6504-3p	65439561	65439568	8mer-1a	65439544	65439568	148	-13.97
CAediting_824065	chr11_65439433_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6506-5p	65439428	65439434	7mer-m8	65439413	65439435	144	-13.81
CAediting_824075	chr11_65440028_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-660-3p	65440027	65440034	8mer-1a	65440015	65440034	144	-16.11
CAediting_824100	chr11_65440768_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-660-3p	65440767	65440773	7mer-m8	65440755	65440774	153	-19.55
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-660-3p	65440767	65440773	7mer-m8	65440755	65440774	153	-19.55
CAediting_824096	chr11_65440698_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-664a-5p	65440697	65440703	7mer-m8	65440681	65440704	141	-13.79
CAediting_824097	chr11_65440702_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-664a-5p	65440697	65440703	7mer-m8	65440681	65440704	141	-13.79
CAediting_824100	chr11_65440768_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6742-3p	65440764	65440771	8mer-1a	65440752	65440771	145	-17.61
CAediting_824075	chr11_65440028_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6747-3p	65440024	65440031	8mer-1a	65440010	65440031	155	-28.61
CAediting_824131	chr11_65442653_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6747-3p	65442649	65442655	7mer-m8	65442635	65442656	150	-22.65
CAediting_824104	chr11_65440800_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-675-5p	65440796	65440803	8mer-1a	65440781	65440803	145	-22.15
CAediting_824071	chr11_65439660_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6758-3p	65439655	65439662	8mer-1a	65439645	65439662	150	-17.5
CAediting_824097	chr11_65440702_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6765-3p	65440700	65440706	7mer-m8	65440687	65440707	152	-20.77
CAediting_824106	chr11_65440825_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6773-3p	65440820	65440827	8mer-1a	65440806	65440827	142	-15.63
CAediting_824091	chr11_65440606_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6778-3p	65440603	65440609	7mer-m8	65440590	65440610	142	-13.75
CAediting_824130	chr11_65442643_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6778-3p	65442640	65442646	7mer-m8	65442627	65442647	143	-14.47
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6779-5p	65441419	65441426	8mer-1a	65441404	65441426	146	-23.87
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6780a-5p	65441419	65441426	8mer-1a	65441405	65441426	143	-24.47
CAediting_824100	chr11_65440768_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6783-3p	65440765	65440771	7mer-m8	65440745	65440772	146	-25.44
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6783-3p	65440765	65440771	7mer-m8	65440745	65440772	146	-25.44
CAediting_824093	chr11_65440628_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6790-3p	65440626	65440633	8mer-1a	65440613	65440633	155	-25.17
CAediting_824133	chr11_65442665_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6790-3p	65442663	65442670	8mer-1a	65442645	65442670	152	-25.71
CAediting_824106	chr11_65440825_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6805-3p	65440824	65440831	8mer-1a	65440809	65440831	154	-21.46
CAediting_824107	chr11_65440830_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6805-3p	65440824	65440831	8mer-1a	65440809	65440831	154	-21.46
CAediting_824063	chr11_65439419_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6807-5p	65439413	65439419	7mer-m8	65439398	65439420	144	-19.28
CAediting_824072	chr11_65439993_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6807-5p	65439987	65439993	7mer-m8	65439973	65439994	141	-12.32
CAediting_824127	chr11_65442619_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6807-5p	65442613	65442619	7mer-m8	65442599	65442620	145	-15.98
CAediting_824101	chr11_65440771_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6829-3p	65440768	65440774	7mer-m8	65440756	65440775	144	-17.5
CAediting_824062	chr11_65439410_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6841-3p	65439406	65439412	7mer-m8	65439391	65439413	147	-15.75
CAediting_824141	chr11_65442704_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6855-5p	65442703	65442709	7mer-m8	65442686	65442710	145	-17.81
CAediting_824142	chr11_65442709_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6855-5p	65442703	65442709	7mer-m8	65442686	65442710	145	-17.81
CAediting_824123	chr11_65441461_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6860	65441456	65441462	7mer-m8	65441445	65441463	146	-19.8
CAediting_824076	chr11_65440047_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6878-3p	65440041	65440048	8mer-1a	65440026	65440048	154	-22.95
CAediting_824091	chr11_65440606_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6878-3p	65440605	65440612	8mer-1a	65440588	65440612	149	-16.38
CAediting_824085	chr11_65440368_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6881-3p	65440367	65440373	7mer-m8	65440353	65440374	149	-16.96
CAediting_824142	chr11_65442709_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6890-5p	65442704	65442710	7mer-m8	65442691	65442711	140	-13.09
CAediting_824073	chr11_65440001_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7151-3p	65439995	65440001	7mer-m8	65439986	65440002	146	-22.21
CAediting_824083	chr11_65440349_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7151-3p	65440343	65440349	7mer-m8	65440330	65440350	140	-18.29
CAediting_824098	chr11_65440724_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7151-3p	65440718	65440724	7mer-m8	65440705	65440725	140	-17.08
CAediting_824145	chr11_65442759_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7151-3p	65442753	65442759	7mer-m8	65442739	65442760	141	-18.79
CAediting_824088	chr11_65440402_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7156-3p	65440396	65440402	7mer-m8	65440383	65440403	150	-26.33
CAediting_824124	chr11_65441945_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-7160-5p	65441941	65441947	7mer-m8	65441929	65441948	149	-17.19
CAediting_824073	chr11_65440001_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-8052	65440001	65440007	7mer-1a	65439989	65440007	148	-29.06
CAediting_824113	chr11_65441399_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-8081	65441393	65441399	7mer-m8	65441379	65441400	146	-13.1
CAediting_824118	chr11_65441426_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-887-5p	65441420	65441427	8mer-1a	65441407	65441427	140	-11.48
CAediting_824117	chr11_65441425_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-887-5p	65441420	65441427	8mer-1a	65441407	65441427	140	-11.48

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65434509	65434516	8mer-1a	65434491	65434516	145	-14.11
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65434740	65434746	7mer-m8	65434724	65434747	149	-13.96
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65436023	65436029	7mer-m8	65436009	65436030	141	-17.76
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65441938	65441945	8mer-1a	65441924	65441945	146	-16.74
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65445076	65445083	8mer-1a	65445066	65445083	146	-14.5
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65430213	65430219	7mer-m8	65430196	65430220	150	-17.33
CAediting_846604	chr11_93733708_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1304-3p	65436181	65436187	7mer-m8	65436167	65436188	145	-16.96
CAediting_846604	chr11_93733708_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1304-3p	65442046	65442053	8mer-1a	65442032	65442053	156	-25.25
CAediting_980496	chr14_31014685_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-624-3p	65436482	65436488	7mer-m8	65436470	65436489	151	-18.2
CAediting_980496	chr14_31014685_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-624-3p	65438092	65438098	7mer-m8	65438080	65438099	147	-20.58
CAediting_1306324	chr19_13836464_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-27a-3p	65423568	65423574	7mer-m8	65423555	65423575	140	-20.89
CAediting_393	chr1_1167164_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200b-3p	65441587	65441592	6mer	65441572	65441593	144	-15.29
CAediting_393	chr1_1167164_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200b-3p	65442408	65442414	7mer-m8	65442393	65442415	146	-12.48
CAediting_393	chr1_1167164_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200b-3p	65443619	65443625	7mer-m8	65443603	65443626	141	-17.05
CAediting_688080	chr9_63819626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4477b	65441967	65441973	7mer-m8	65441954	65441974	146	-16.27
CAediting_688081	chr9_63819627_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4477b	65424393	65424399	7mer-m8	65424379	65424400	157	-12.46
CAediting_688081	chr9_63819627_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4477b	65431648	65431654	7mer-m8	65431635	65431655	150	-11.44
CAediting_1054808	chr15_66496985_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4512	65434953	65434959	7mer-m8	65434938	65434960	143	-19.64
CAediting_1054808	chr15_66496985_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4512	65435834	65435841	8mer-1a	65435821	65435841	143	-22.49
CAediting_1054808	chr15_66496985_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4512	65423464	65423470	7mer-m8	65423451	65423471	150	-25.64
CAediting_1229413	chr17_67471544_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65441005	65441011	7mer-m8	65440990	65441012	147	-10.79
CAediting_1229413	chr17_67471544_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65429706	65429712	7mer-m8	65429689	65429713	154	-18.21
CAediting_1229413	chr17_67471544_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65429789	65429795	7mer-m8	65429770	65429796	149	-11.06
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65435225	65435231	7mer-m8	65435202	65435232	144	-11.15
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65436700	65436706	7mer-m8	65436683	65436707	140	-11.25
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65437715	65437721	7mer-m8	65437699	65437722	144	-11.02
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65437873	65437879	7mer-m8	65437858	65437880	152	-18.64
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65423329	65423335	7mer-m8	65423313	65423336	144	-13.18
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65433758	65433764	7mer-m8	65433738	65433765	149	-9.35
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65433776	65433782	7mer-m8	65433759	65433783	146	-14.86
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65435076	65435082	7mer-m8	65435055	65435083	159	-16.46
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65435492	65435498	7mer-m8	65435475	65435499	150	-10.67
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65438424	65438430	7mer-m8	65438404	65438431	154	-12.86
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65440985	65440991	7mer-m8	65440966	65440992	160	-20.66
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65425590	65425595	6mer	65425568	65425596	140	-15.75
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65426139	65426145	7mer-m8	65426119	65426146	161	-18.52
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65428492	65428498	7mer-m8	65428473	65428499	158	-14.8
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432708	65432714	7mer-m8	65432688	65432715	145	-9.35
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432726	65432732	7mer-m8	65432709	65432733	146	-14.86
CAediting_1160181	chr17_7017644_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-195-3p	65436170	65436176	7mer-m8	65436151	65436177	150	-20.28
CAediting_1160181	chr17_7017644_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-195-3p	65423600	65423607	8mer-1a	65423586	65423607	152	-14.04
CAediting_1306323	chr19_13836462_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-27a-3p	65444032	65444038	7mer-1a	65444017	65444038	154	-29.28
CAediting_1368054	chr19_46709310_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-320e	65432987	65432993	7mer-m8	65432977	65432994	141	-14
CAediting_1368054	chr19_46709310_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-320e	65444392	65444398	7mer-m8	65444382	65444399	150	-19.8
CAediting_86358	chr1_109598906_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-197-5p	65427816	65427822	7mer-m8	65427801	65427823	149	-20.78
CAediting_86358	chr1_109598906_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-197-5p	65427995	65428000	6mer	65427990	65428016	143	-31.62
CAediting_86358	chr1_109598906_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-197-5p	65429737	65429743	7mer-m8	65429722	65429744	153	-20.33
CAediting_86358	chr1_109598906_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-197-5p	65423689	65423695	7mer-m8	65423673	65423696	160	-27.38
CAediting_77128	chr1_85133844_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4423-3p	65438097	65438104	8mer-1a	65438084	65438104	140	-12.39
CAediting_77128	chr1_85133844_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4423-3p	65441455	65441461	7mer-m8	65441442	65441462	140	-13.86
CAediting_77128	chr1_85133844_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4423-3p	65442072	65442078	7mer-m8	65442058	65442079	147	-19
CAediting_1399425	chr20_1392958_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6869-5p	65436738	65436743	6mer	65436722	65436744	142	-25.61
CAediting_1399425	chr20_1392958_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6869-5p	65424486	65424492	7mer-m8	65424468	65424493	149	-32.58
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65427805	65427811	7mer-m8	65427790	65427812	151	-9.15
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65429244	65429250	7mer-m8	65429229	65429251	160	-12.4
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65431013	65431019	7mer-m8	65430999	65431020	140	-12.69
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65423668	65423674	7mer-m8	65423650	65423675	146	-11.44
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65432306	65432311	6mer	65432291	65432312	156	-14.08
CAediting_396018	chr5_1062918_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4635	65436932	65436938	7mer-m8	65436920	65436939	152	-15.19
CAediting_396018	chr5_1062918_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4635	65443680	65443686	7mer-m8	65443666	65443687	153	-15.82
CAediting_442554	chr5_154685830_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1303	65424113	65424119	7mer-m8	65424098	65424120	147	-19.13
CAediting_442554	chr5_154685830_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1303	65427605	65427611	7mer-m8	65427591	65427612	142	-14.67
CAediting_604450	chr7_133034877_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3654	65434757	65434763	7mer-m8	65434746	65434764	145	-19.55
CAediting_604450	chr7_133034877_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3654	65438080	65438087	8mer-1a	65438067	65438087	148	-19.89
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65435053	65435059	7mer-m8	65435040	65435060	145	-14.16
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65435628	65435634	7mer-m8	65435612	65435635	154	-19.09
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65437821	65437827	7mer-m8	65437805	65437828	150	-15.41
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65426426	65426432	7mer-m8	65426409	65426433	170	-24.18
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65430501	65430508	8mer-1a	65430485	65430508	150	-15.77
CAediting_573001	chr7_92204086_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1285-5p	65439658	65439663	6mer	65439644	65439664	154	-29.2
CAediting_573001	chr7_92204086_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1285-5p	65428463	65428469	7mer-m8	65428449	65428470	146	-19.89
CAediting_1524209	chrX_134546392_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-503-5p	65425488	65425494	7mer-m8	65425470	65425495	159	-23.34

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_573000	chr7_92204081_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1285-5p	65435668	65435674	7mer-m8	65435655	65435675	140	-10.23
CAediting_573001	chr7_92204086_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1285-5p	65435668	65435674	7mer-m8	65435655	65435675	140	-10.23
CAediting_573000	chr7_92204081_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1285-5p	65428067	65428073	7mer-m8	65428054	65428074	150	-20
CAediting_573001	chr7_92204086_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1285-5p	65428067	65428073	7mer-m8	65428054	65428074	150	-20
CAediting_442554	chr5_154685830_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1303	65436509	65436515	7mer-m8	65436496	65436516	154	-13.54
CAediting_846604	chr11_93733708_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1304-3p	65428191	65428197	7mer-m8	65428177	65428198	146	-11.98
CAediting_846604	chr11_93733708_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1304-3p	65428461	65428468	8mer-1a	65428448	65428468	151	-15.73
CAediting_846604	chr11_93733708_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-1304-3p	65430733	65430739	7mer-m8	65430719	65430740	145	-14.77
CAediting_1160181	chr17_7017644_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-195-3p	65438344	65438350	7mer-m8	65438331	65438351	144	-6.61
CAediting_1160181	chr17_7017644_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-195-3p	65438382	65438389	8mer-1a	65438368	65438389	140	-4.57
CAediting_393	chr1_1167164_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200b-3p	65432938	65432944	7mer-m8	65432924	65432945	146	-10.21
CAediting_393	chr1_1167164_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200b-3p	65434580	65434586	7mer-m8	65434566	65434587	140	-7.29
CAediting_393	chr1_1167164_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200b-3p	65428290	65428296	7mer-m8	65428276	65428297	147	-12.82
CAediting_393	chr1_1167164_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-200b-3p	65430390	65430395	6mer	65430376	65430396	149	-12.83
CAediting_1306324	chr19_13836464_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-27a-3p	65425523	65425530	8mer-1a	65425511	65425530	147	-14.82
CAediting_1306323	chr19_13836462_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-27a-3p	65425523	65425530	8mer-1a	65425511	65425530	147	-14.82
CAediting_1368054	chr19_46709310_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-320e	65434759	65434765	7mer-m8	65434749	65434766	142	-13.17
CAediting_1368054	chr19_46709310_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-320e	65436922	65436928	7mer-m8	65436912	65436929	145	-14.41
CAediting_1368054	chr19_46709310_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-320e	65437941	65437947	7mer-m8	65437931	65437948	155	-16.55
CAediting_1368054	chr19_46709310_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-320e	65439569	65439575	7mer-m8	65439557	65439576	149	-15.18
CAediting_1368054	chr19_46709310_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-320e	65425357	65425363	7mer-m8	65425348	65425364	149	-14.39
CAediting_604450	chr7_133034877_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-3654	65437862	65437868	7mer-m8	65437853	65437869	147	-18.81
CAediting_77128	chr1_85133844_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4423-3p	65430237	65430243	7mer-m8	65430224	65430244	150	-15.14
CAediting_1054808	chr15_66496985_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4512	65436347	65436353	7mer-m8	65436333	65436354	151	-22.39
CAediting_1054808	chr15_66496985_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4512	65444782	65444787	6mer	65444764	65444788	143	-29.58
CAediting_396018	chr5_1062918_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-4635	65424382	65424389	8mer-1a	65424369	65424389	150	-16.28
CAediting_1524209	chrX_134546392_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-503-5p	65442229	65442235	7mer-m8	65442214	65442236	152	-20.15
CAediting_1524209	chrX_134546392_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-503-5p	65443293	65443298	6mer	65443279	65443299	143	-27.25
CAediting_1524209	chrX_134546392_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-503-5p	65423579	65423585	7mer-m8	65423560	65423586	147	-23.55
CAediting_1229413	chr17_67471544_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432945	65432951	7mer-m8	65432929	65432952	155	-9.33
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432945	65432951	7mer-m8	65432929	65432952	155	-9.33
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432945	65432951	7mer-m8	65432929	65432952	155	-9.33
CAediting_1229413	chr17_67471544_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65437500	65437507	8mer-1a	65437484	65437507	149	-11.62
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65437500	65437507	8mer-1a	65437484	65437507	149	-11.62
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65437500	65437507	8mer-1a	65437484	65437507	149	-11.62
CAediting_1229413	chr17_67471544_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432204	65432210	7mer-m8	65432183	65432211	144	-11.87
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432204	65432210	7mer-m8	65432183	65432211	144	-11.87
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432204	65432210	7mer-m8	65432183	65432211	144	-11.87
CAediting_1229413	chr17_67471544_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432609	65432615	7mer-m8	65432590	65432616	146	-8.13
CAediting_1229414	chr17_67471546_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432609	65432615	7mer-m8	65432590	65432616	146	-8.13
CAediting_1229415	chr17_67471547_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-548aa	65432609	65432615	7mer-m8	65432590	65432616	146	-8.13
CAediting_117844	chr1_162342605_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-556-3p	65433897	65433904	8mer-1a	65433884	65433904	151	-8.64
CAediting_117844	chr1_162342605_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-556-3p	65428174	65428180	7mer-m8	65428160	65428181	152	-15.24
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65438576	65438582	7mer-m8	65438562	65438583	145	-9.69
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65441469	65441475	7mer-m8	65441455	65441476	146	-4.86
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65424806	65424812	7mer-1a	65424794	65424812	143	-9.85
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65425165	65425171	7mer-m8	65425149	65425172	148	-7.43
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65425185	65425191	7mer-1a	65425169	65425191	143	-8.38
CAediting_228905	chr2_188297554_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-561-3p	65427237	65427243	7mer-m8	65427224	65427244	146	-16.68
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65424120	65424126	7mer-m8	65424104	65424127	145	-15.98
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65427172	65427178	7mer-m8	65427160	65427179	144	-22.18
CAediting_524911	chr7_5495852_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-589-3p	65427191	65427197	7mer-m8	65427173	65427198	147	-16.2
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65424503	65424509	7mer-m8	65424489	65424510	140	-11.82
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65428043	65428050	8mer-1a	65428032	65428050	142	-11.81
CAediting_748296	chr10_51299626_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-605-3p	65429334	65429340	7mer-m8	65429323	65429341	147	-10.79
CAediting_980496	chr14_31014685_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-624-3p	65424443	65424449	7mer-1a	65424429	65424449	144	-12.99
CAediting_1351755	chr19_40282625_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-641	65433159	65433164	6mer	65433140	65433165	142	-14.48
CAediting_1351755	chr19_40282625_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-641	65437621	65437627	7mer-m8	65437605	65437628	145	-13.07
CAediting_1351755	chr19_40282625_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-641	65425348	65425354	7mer-m8	65425332	65425355	140	-13.61
CAediting_1351755	chr19_40282625_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-641	65432137	65432142	6mer	65432120	65432143	142	-18.12
CAediting_580943	chr7_100356700_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6840-3p	65433915	65433921	7mer-m8	65433901	65433922	146	-25.11
CAediting_580943	chr7_100356700_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6840-3p	65434691	65434697	7mer-m8	65434677	65434698	152	-17.65
CAediting_580943	chr7_100356700_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6840-3p	65424304	65424310	7mer-m8	65424290	65424311	140	-27.53
CAediting_580943	chr7_100356700_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6840-3p	65443180	65443186	7mer-m8	65443164	65443187	146	-23.17
CAediting_580943	chr7_100356700_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6840-3p	65444720	65444726	7mer-m8	65444706	65444727	147	-23.85
CAediting_580943	chr7_100356700_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6840-3p	65427159	65427165	7mer-m8	65427144	65427166	141	-20.35
CAediting_580943	chr7_100356700_+	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6840-3p	65430265	65430271	7mer-m8	65430251	65430272	143	-21.69
CAediting_1399425	chr20_1392958_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6869-5p	65427327	65427333	7mer-m8	65427314	65427334	146	-18.55
CAediting_468389	chr6_31355314_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6891-5p	65424297	65424303	7mer-m8	65424286	65424304	150	-21.1
CAediting_468389	chr6_31355314_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6891-5p	65441607	65441614	8mer-1a	65441596	65441614	145	-18.43
CAediting_468389	chr6_31355314_-	ENSG00000245532.5	ENST00000501122.2	hsa-miR-6891-5p	65427695	65427701	7mer-m8	65427682	65427702	144	-17.63

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for NEAT1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for NEAT1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_824073	chr11_65440001_+	.	.	0.0336858361183558	0.185720805894289	.	.
LUAD	CAediting_824078	chr11_65440055_+	1.14587063797609e-05	0.406639317280135	.	.	.	.
LUSC	CAediting_824078	chr11_65440055_+	0.0264928215568647	0.301934757050882	.	.	.	.
KIRC	CAediting_824078	chr11_65440055_+	0.0276650731818947	0.200228707004628	.	.	.	.
OV	CAediting_824078	chr11_65440055_+	0.00916233132368657	0.186177526615319	.	.	.	.
LUSC	CAediting_824109	chr11_65441347_+	0.0222571680924865	0.246294047170407	.	.	.	.
STAD	CAediting_824109	chr11_65441347_+	0.00117946773636117	0.191210522168915	.	.	.	.
KIRC	CAediting_824109	chr11_65441347_+	0.0305653699412252	0.159500145928509	.	.	.	.
KIRP	CAediting_824109	chr11_65441347_+	0.00018525333309066	0.491615064752265	.	.	.	.
ESCA	CAediting_824109	chr11_65441347_+	0.0153272168938552	0.195719025911703	.	.	.	.
LAML	CAediting_824109	chr11_65441347_+	0.00169212832906643	0.259395896860403	.	.	.	.
BRCA	CAediting_824110	chr11_65441384_+	0.0139951048727966	0.236954271444362	.	.	.	.
LUAD	CAediting_824110	chr11_65441384_+	3.75630944804494e-06	0.334253943083586	.	.	.	.
LUSC	CAediting_824110	chr11_65441384_+	0.00556879727086072	0.288385271920084	.	.	0.0173003303193187	0.249017456132347
STAD	CAediting_824110	chr11_65441384_+	7.56517995522602e-05	0.259045575334495	.	.	.	.
KIRC	CAediting_824110	chr11_65441384_+	0.000443661019031117	0.268032038426966	.	.	.	.
ESCA	CAediting_824110	chr11_65441384_+	0.000162399613273615	0.334967513174892	.	.	.	.
STAD	CAediting_824111	chr11_65441385_+	.	.	2.39556402207837e-05	0.434003488346984	.	.
OV	CAediting_824111	chr11_65441385_+	0.016884463819091	0.28679653698859	.	.	.	.
STAD	CAediting_824116	chr11_65441418_+	.	.	0.000137043133927641	0.316793546213881	.	.
ESCA	CAediting_824116	chr11_65441418_+	.	.	0.0070813049332629	0.282022268018222	.	.
ESCA	CAediting_824119	chr11_65441427_+	0.048666925614585	0.193826434018568	.	.	.	.
LUAD	CAediting_824127	chr11_65442619_+	0.0462250957310105	0.201868959487416	.	.	.	.
STAD	CAediting_824127	chr11_65442619_+	0.000595066341651216	0.230230860415547	.	.	.	.
ESCA	CAediting_824127	chr11_65442619_+	0.00297579802074863	0.255669963571778	.	.	.	.
OV	CAediting_824127	chr11_65442619_+	0.00115199927910767	0.215825692557051	.	.	.	.
ESCA	CAediting_824135	chr11_65442678_+	0.0294858086376572	0.2115511985225	.	.	.	.

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Relation with cancer stages for NEAT1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_824078	chr11_65440055_+	0.00586824099992631	0.250108563020976
KIRC	pathologic_stage	CAediting_824109	chr11_65441347_+	2.82321482989675e-05	0.304247101257194
KIRC	pathologic_stage	CAediting_824110	chr11_65441384_+	0.00516478755890519	0.215475594135459
KIRC	pathologic_stage	CAediting_824127	chr11_65442619_+	0.00704337825668072	0.347270173819431
KIRP	clinical_stage	CAediting_824109	chr11_65441347_+	0.000649409896506972	0.541434157855672
KIRP	pathologic_stage	CAediting_824109	chr11_65441347_+	1.46065086728533e-06	0.637258668047769
LUAD	pathologic_stage	CAediting_824078	chr11_65440055_+	0.0351092981101538	0.204911842865329
LUAD	pathologic_stage	CAediting_824116	chr11_65441418_+	0.00343797356421266	0.384472521195158
LUAD	pathologic_stage	CAediting_824119	chr11_65441427_+	0.0149230963373687	0.276498559192269
LUAD	pathologic_stage	CAediting_824135	chr11_65442678_+	0.00376506222085939	0.339581895329017
STAD	pathologic_stage	CAediting_824073	chr11_65440001_+	0.0397048014385816	0.18350474224622

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Relation with survival for NEAT1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_824109	chr11_65441347_+	0.00882638418329995	0.0476315	3.89928
ESCA	CAediting_824078	chr11_65440055_+	0.0135630362045892	0.0192893	641.503
LAML	CAediting_824127	chr11_65442619_+	0.00802163621515661	0.0146734	58.6467

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RelatedDrugs for NEAT1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for NEAT1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
NEAT1	C0023903	Liver neoplasms	1	CTD_human
NEAT1	C0033578	Prostatic Neoplasms	1	CTD_human
NEAT1	C0087031	Juvenile-Onset Still Disease	1	CTD_human
NEAT1	C0345904	Malignant neoplasm of liver	1	CTD_human
NEAT1	C0376358	Malignant neoplasm of prostate	1	CTD_human
NEAT1	C3495559	Juvenile arthritis	1	CTD_human
NEAT1	C3714758	Juvenile psoriatic arthritis	1	CTD_human
NEAT1	C4552091	Polyarthritis, Juvenile, Rheumatoid Factor Negative	1	CTD_human
NEAT1	C4704862	Polyarthritis, Juvenile, Rheumatoid Factor Positive	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene