CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CRCP (CAeditome ID:27297)

Gene summary for CRCP

check button Gene summary
Gene informationGene symbol

CRCP

Gene ID

27297

Gene nameCGRP receptor component
SynonymsC17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9
Cytomap

7q11.21

Type of geneprotein-coding
DescriptionDNA-directed RNA polymerase III subunit RPC9CGRP-receptor component proteinRNA polymerase III subunit C9calcitonin gene-related peptide-receptor component protein
Modification date20210518
UniProtAcc

O75575

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CRCP

GO:0003899

DNA-directed RNA polymerase III subunit RPC9

12482973

CRCP

GO:0006383

DNA-directed RNA polymerase III subunit RPC9

12482973

CRCP

GO:0009360

DNA-directed RNA polymerase III subunit RPC9

12482973


Top

RNA A-to-I events for CRCP

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000241258.5

check button RNA A-to-I editing events in Cancer.
CAediting_550611(66115826, +), CAediting_550612(66115827, +), CAediting_550613(66115830, +), CAediting_550614(66115831, +), CAediting_550615(66115833, +), CAediting_550616(66115853, +), CAediting_550617(66115875, +), CAediting_550618(66115880, +), CAediting_550619(66115899, +), CAediting_550620(66115903, +), CAediting_550621(66115904, +), CAediting_550622(66115914, +), CAediting_550623(66115923, +), CAediting_550624(66115926, +), CAediting_550625(66115936, +), CAediting_550626(66115938, +), CAediting_550627(66115963, +), CAediting_550628(66116008, +), CAediting_550629(66116034, +), CAediting_550630(66116059, +), CAediting_550631(66116061, +), CAediting_550632(66116075, +), CAediting_550633(66116218, +), CAediting_550634(66116231, +), CAediting_550635(66116233, +), CAediting_550636(66116236, +), CAediting_550637(66116240, +), CAediting_550638(66116269, +), CAediting_550639(66116275, +), CAediting_550640(66116280, +), CAediting_550641(66116281, +), CAediting_550642(66116288, +), CAediting_550643(66116313, +), CAediting_550644(66116340, +), CAediting_550645(66116341, +), CAediting_550646(66116374, +), CAediting_550647(66116384, +), CAediting_550648(66116404, +), CAediting_550649(66116410, +), CAediting_550650(66116452, +), CAediting_550651(66116477, +), CAediting_550652(66116491, +), CAediting_550653(66116863, +), CAediting_550654(66116865, +), CAediting_550655(66116866, +), CAediting_550656(66116879, +), CAediting_550657(66116889, +), CAediting_550658(66116906, +), CAediting_550659(66116914, +), CAediting_550660(66116956, +), CAediting_550661(66116959, +), CAediting_550662(66116965, +), CAediting_550663(66116971, +), CAediting_550664(66116974, +), CAediting_550665(66116975, +), CAediting_550666(66116984, +), CAediting_550667(66117000, +), CAediting_550668(66117006, +), CAediting_550669(66117014, +), CAediting_550670(66117033, +), CAediting_550671(66117041, +), CAediting_550672(66117042, +), CAediting_550673(66117053, +), CAediting_550674(66117070, +), CAediting_550675(66117999, +), CAediting_550676(66118033, +), CAediting_550677(66118044, +), CAediting_550678(66118080, +), CAediting_550679(66118107, +), CAediting_550680(66118117, +), CAediting_550681(66118119, +), CAediting_550682(66118133, +), CAediting_550683(66118143, +), CAediting_550684(66118144, +), CAediting_550685(66118148, +), CAediting_550686(66118158, +), CAediting_550687(66118161, +), CAediting_550688(66118185, +), CAediting_550689(66118228, +), CAediting_550690(66118250, +), CAediting_550691(66118252, +),

Top

RNA editing positional annotations for CRCP using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_550611chr7_66115826_+ncRNA_intronic
CAediting_550612chr7_66115827_+ncRNA_intronic
CAediting_550613chr7_66115830_+ncRNA_intronic
CAediting_550614chr7_66115831_+ncRNA_intronic
CAediting_550615chr7_66115833_+ncRNA_intronic
CAediting_550616chr7_66115853_+ncRNA_intronic
CAediting_550617chr7_66115875_+ncRNA_intronic
CAediting_550618chr7_66115880_+ncRNA_intronic
CAediting_550619chr7_66115899_+ncRNA_intronic
CAediting_550620chr7_66115903_+ncRNA_intronic
CAediting_550621chr7_66115904_+ncRNA_intronic
CAediting_550622chr7_66115914_+ncRNA_intronic
CAediting_550623chr7_66115923_+ncRNA_intronic
CAediting_550624chr7_66115926_+ncRNA_intronic
CAediting_550625chr7_66115936_+ncRNA_intronic
CAediting_550626chr7_66115938_+ncRNA_intronic
CAediting_550627chr7_66115963_+ncRNA_intronic
CAediting_550628chr7_66116008_+ncRNA_intronic
CAediting_550629chr7_66116034_+ncRNA_intronic
CAediting_550630chr7_66116059_+ncRNA_intronic
CAediting_550631chr7_66116061_+ncRNA_intronic
CAediting_550632chr7_66116075_+ncRNA_intronic
CAediting_550633chr7_66116218_+ncRNA_intronic
CAediting_550634chr7_66116231_+ncRNA_intronic
CAediting_550635chr7_66116233_+ncRNA_intronic
CAediting_550636chr7_66116236_+ncRNA_intronic
CAediting_550637chr7_66116240_+ncRNA_intronic
CAediting_550638chr7_66116269_+ncRNA_intronic
CAediting_550639chr7_66116275_+ncRNA_intronic
CAediting_550640chr7_66116280_+ncRNA_intronic
CAediting_550641chr7_66116281_+ncRNA_intronic
CAediting_550642chr7_66116288_+ncRNA_intronic
CAediting_550643chr7_66116313_+ncRNA_intronic
CAediting_550644chr7_66116340_+ncRNA_intronic
CAediting_550645chr7_66116341_+ncRNA_intronic
CAediting_550646chr7_66116374_+ncRNA_intronic
CAediting_550647chr7_66116384_+ncRNA_intronic
CAediting_550648chr7_66116404_+ncRNA_intronic
CAediting_550649chr7_66116410_+ncRNA_intronic
CAediting_550650chr7_66116452_+ncRNA_intronic
CAediting_550651chr7_66116477_+ncRNA_intronic
CAediting_550652chr7_66116491_+ncRNA_intronic
CAediting_550653chr7_66116863_+ncRNA_intronic
CAediting_550654chr7_66116865_+ncRNA_intronic
CAediting_550655chr7_66116866_+ncRNA_intronic
CAediting_550656chr7_66116879_+ncRNA_intronic
CAediting_550657chr7_66116889_+ncRNA_intronic
CAediting_550658chr7_66116906_+ncRNA_intronic
CAediting_550659chr7_66116914_+ncRNA_intronic
CAediting_550660chr7_66116956_+ncRNA_intronic
CAediting_550661chr7_66116959_+ncRNA_intronic
CAediting_550662chr7_66116965_+ncRNA_intronic
CAediting_550663chr7_66116971_+ncRNA_intronic
CAediting_550664chr7_66116974_+ncRNA_intronic
CAediting_550665chr7_66116975_+ncRNA_intronic
CAediting_550666chr7_66116984_+ncRNA_intronic
CAediting_550667chr7_66117000_+ncRNA_intronic
CAediting_550668chr7_66117006_+ncRNA_intronic
CAediting_550669chr7_66117014_+ncRNA_intronic
CAediting_550670chr7_66117033_+ncRNA_intronic
CAediting_550671chr7_66117041_+ncRNA_intronic
CAediting_550672chr7_66117042_+ncRNA_intronic
CAediting_550673chr7_66117053_+ncRNA_intronic
CAediting_550674chr7_66117070_+ncRNA_intronic
CAediting_550675chr7_66117999_+ncRNA_intronic
CAediting_550676chr7_66118033_+ncRNA_intronic
CAediting_550677chr7_66118044_+ncRNA_intronic
CAediting_550678chr7_66118080_+ncRNA_intronic
CAediting_550679chr7_66118107_+ncRNA_intronic
CAediting_550680chr7_66118117_+ncRNA_intronic
CAediting_550681chr7_66118119_+ncRNA_intronic
CAediting_550682chr7_66118133_+ncRNA_intronic
CAediting_550683chr7_66118143_+ncRNA_intronic
CAediting_550684chr7_66118144_+ncRNA_intronic
CAediting_550685chr7_66118148_+ncRNA_intronic
CAediting_550686chr7_66118158_+ncRNA_intronic
CAediting_550687chr7_66118161_+ncRNA_intronic
CAediting_550688chr7_66118185_+ncRNA_intronic
CAediting_550689chr7_66118228_+ncRNA_intronic
CAediting_550690chr7_66118250_+ncRNA_intronic
CAediting_550691chr7_66118252_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_550611chr7_66115826_+SINEAluAluJb
CAediting_550612chr7_66115827_+SINEAluAluJb
CAediting_550613chr7_66115830_+SINEAluAluJb
CAediting_550614chr7_66115831_+SINEAluAluJb
CAediting_550615chr7_66115833_+SINEAluAluJb
CAediting_550616chr7_66115853_+SINEAluAluJb
CAediting_550617chr7_66115875_+SINEAluAluJb
CAediting_550618chr7_66115880_+SINEAluAluJb
CAediting_550619chr7_66115899_+SINEAluAluJb
CAediting_550620chr7_66115903_+SINEAluAluJb
CAediting_550621chr7_66115904_+SINEAluAluJb
CAediting_550622chr7_66115914_+SINEAluAluJb
CAediting_550623chr7_66115923_+SINEAluAluJb
CAediting_550624chr7_66115926_+SINEAluAluJb
CAediting_550625chr7_66115936_+SINEAluAluJb
CAediting_550626chr7_66115938_+SINEAluAluJb
CAediting_550627chr7_66115963_+SINEAluAluJb
CAediting_550628chr7_66116008_+SINEAluAluJb
CAediting_550629chr7_66116034_+SINEAluAluJb
CAediting_550630chr7_66116059_+SINEAluAluJb
CAediting_550631chr7_66116061_+SINEAluAluJb
CAediting_550632chr7_66116075_+SINEAluAluJb
CAediting_550633chr7_66116218_+SINEAluAluJo
CAediting_550634chr7_66116231_+SINEAluAluJo
CAediting_550635chr7_66116233_+SINEAluAluJo
CAediting_550636chr7_66116236_+SINEAluAluJo
CAediting_550637chr7_66116240_+SINEAluAluJo
CAediting_550638chr7_66116269_+SINEAluAluJo
CAediting_550639chr7_66116275_+SINEAluAluJo
CAediting_550640chr7_66116280_+SINEAluAluJo
CAediting_550641chr7_66116281_+SINEAluAluJo
CAediting_550642chr7_66116288_+SINEAluAluJo
CAediting_550643chr7_66116313_+SINEAluAluJo
CAediting_550644chr7_66116340_+SINEAluAluJo
CAediting_550645chr7_66116341_+SINEAluAluJo
CAediting_550646chr7_66116374_+SINEAluAluJo
CAediting_550647chr7_66116384_+SINEAluAluJo
CAediting_550648chr7_66116404_+SINEAluAluJo
CAediting_550649chr7_66116410_+SINEAluAluJo
CAediting_550650chr7_66116452_+SINEAluAluJo
CAediting_550651chr7_66116477_+SINEAluAluJo
CAediting_550652chr7_66116491_+SINEAluAluJo
CAediting_550653chr7_66116863_+SINEAluAluSx1
CAediting_550654chr7_66116865_+SINEAluAluSx1
CAediting_550655chr7_66116866_+SINEAluAluSx1
CAediting_550656chr7_66116879_+SINEAluAluSx1
CAediting_550657chr7_66116889_+SINEAluAluSx1
CAediting_550658chr7_66116906_+SINEAluAluSx1
CAediting_550659chr7_66116914_+SINEAluAluSx1
CAediting_550660chr7_66116956_+SINEAluAluSx1
CAediting_550661chr7_66116959_+SINEAluAluSx1
CAediting_550662chr7_66116965_+SINEAluAluSx1
CAediting_550663chr7_66116971_+SINEAluAluSx1
CAediting_550664chr7_66116974_+SINEAluAluSx1
CAediting_550665chr7_66116975_+SINEAluAluSx1
CAediting_550666chr7_66116984_+SINEAluAluSx1
CAediting_550667chr7_66117000_+SINEAluAluSx1
CAediting_550668chr7_66117006_+SINEAluAluSx1
CAediting_550669chr7_66117014_+SINEAluAluSx1
CAediting_550670chr7_66117033_+SINEAluAluSx1
CAediting_550671chr7_66117041_+SINEAluAluSx1
CAediting_550672chr7_66117042_+SINEAluAluSx1
CAediting_550673chr7_66117053_+SINEAluAluSx1
CAediting_550674chr7_66117070_+SINEAluAluSx1
CAediting_550675chr7_66117999_+SINEAluAluSx
CAediting_550676chr7_66118033_+SINEAluAluSx
CAediting_550677chr7_66118044_+SINEAluAluSx
CAediting_550678chr7_66118080_+SINEAluAluSx
CAediting_550679chr7_66118107_+SINEAluAluSx
CAediting_550680chr7_66118117_+SINEAluAluSx
CAediting_550681chr7_66118119_+SINEAluAluSx
CAediting_550682chr7_66118133_+SINEAluAluSx
CAediting_550683chr7_66118143_+SINEAluAluSx
CAediting_550684chr7_66118144_+SINEAluAluSx
CAediting_550685chr7_66118148_+SINEAluAluSx
CAediting_550686chr7_66118158_+SINEAluAluSx
CAediting_550687chr7_66118161_+SINEAluAluSx
CAediting_550688chr7_66118185_+SINEAluAluSx
CAediting_550689chr7_66118228_+SINEAluAluSx
CAediting_550690chr7_66118250_+SINEAluAluSx
CAediting_550691chr7_66118252_+SINEAluAluSx

Top

RNA A-to-I editing events in the alternative splicing sites for CRCP

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000241258.5.CRCP.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000241258.5.CRCP.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CRCP

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
STAD.CAediting_550645.ENSG00000241258.CRCP.png
Soverview

Top

Protein coding region RNA A-to-I editings for CRCP

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for CRCP

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000241258.5ENST00000360415hsa-miR-200b-3p66134346661343527mer-m86613433466134353145-12.17
CAediting_393chr1_1167164_+ENSG00000241258.5ENST00000360415hsa-miR-200b-3p66152272661522787mer-m86615225966152279144-12.02
CAediting_1229415chr17_67471547_+ENSG00000241258.5ENST00000360415hsa-miR-548aa66152464661524707mer-m86615244766152471144-10.36
CAediting_1160181chr17_7017644_-ENSG00000241258.5ENST00000360415hsa-miR-195-3p66153756661537638mer-1a6615374266153763159-15.99
CAediting_1351755chr19_40282625_-ENSG00000241258.5ENST00000360415hsa-miR-64166154397661544037mer-m86615437966154404152-18.62
CAediting_1368054chr19_46709310_-ENSG00000241258.5ENST00000360415hsa-miR-320e66152930661529378mer-1a6615292166152937146-15.37
CAediting_1229415chr17_67471547_+ENSG00000241258.5ENST00000431089hsa-miR-548aa66152464661524707mer-m86615244766152471144-10.36
CAediting_1229415chr17_67471547_+ENSG00000241258.5ENST00000398684hsa-miR-548aa66152464661524707mer-m86615244766152471144-10.36
CAediting_1229415chr17_67471547_+ENSG00000241258.5ENST00000338592hsa-miR-548aa66152464661524707mer-m86615244766152471144-10.36
CAediting_1368054chr19_46709310_-ENSG00000241258.5ENST00000338592hsa-miR-320e66152930661529378mer-1a6615292166152937146-15.37
CAediting_1524209chrX_134546392_-ENSG00000241258.5ENST00000360415hsa-miR-503-5p66153026661530316mer6615300966153032140-23.11
CAediting_1524209chrX_134546392_-ENSG00000241258.5ENST00000338592hsa-miR-503-5p66153026661530316mer6615300966153032140-23.11

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000241258.5ENST00000360415hsa-miR-195-3p66153545661535517mer-m86615353166153552153-10.23

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for CRCP

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for CRCP

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LAMLCAediting_550644chr7_66116340_+....0.0157458301035780.285650250035578
LAMLCAediting_550656chr7_66116879_+....0.02421979849455880.309300637286068

Top

Relation with cancer stages for CRCP

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCAclinical_stageCAediting_550656chr7_66116879_+0.0393133256351004-0.519182540802821

Top

Relation with survival for CRCP

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for CRCP

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for CRCP

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource