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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: COQ2 (CAeditome ID:27235) |
Gene summary for COQ2 |
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Gene information | Gene symbol | COQ2 | Gene ID | 27235 |
Gene name | coenzyme Q2, polyprenyltransferase | |
Synonyms | CL640|COQ10D1|MSA1|PHB:PPT | |
Cytomap | 4q21.23 | |
Type of gene | protein-coding | |
Description | 4-hydroxybenzoate polyprenyltransferase, mitochondrial4-HB polyprenyltransferase4-hydroxybenzoate decaprenyltransferasePHB:polyprenyltransferasecoenzyme Q2 4-hydroxybenzoate polyprenyltransferasecoenzyme Q2 homolog, prenyltransferasepara-hydroxybenz | |
Modification date | 20210518 | |
UniProtAcc | Q96H96 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
COQ2 | GO:0006744 | 4-hydroxybenzoate polyprenyltransferase, mitochondrial | 15153069 |
COQ2 | GO:0031305 | 4-hydroxybenzoate polyprenyltransferase, mitochondrial | 27493029 |
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RNA A-to-I events for COQ2 |
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CAediting_372450(83264493, -), CAediting_372451(83264575, -), CAediting_372452(83264596, -), CAediting_372453(83264618, -), CAediting_372454(83264634, -), CAediting_372455(83264638, -), CAediting_372456(83265404, -), CAediting_372457(83265460, -), CAediting_372458(83265489, -), CAediting_372459(83265490, -), CAediting_372460(83265696, -), CAediting_372461(83265776, -), CAediting_372462(83265780, -), CAediting_372463(83265802, -), CAediting_372464(83265803, -), CAediting_372465(83265844, -), CAediting_372466(83265897, -), CAediting_372467(83265915, -), CAediting_372468(83265960, -), CAediting_372469(83266443, -), CAediting_372470(83266496, -), CAediting_372471(83266522, -), CAediting_372472(83266526, -), CAediting_372473(83266533, -), CAediting_372474(83266535, -), CAediting_372475(83266536, -), CAediting_372476(83266553, -), CAediting_372477(83266561, -), CAediting_372478(83266588, -), CAediting_372479(83267173, -), CAediting_372480(83267207, -), CAediting_372481(83267208, -), CAediting_372482(83274032, -), CAediting_372483(83274034, -), |
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RNA editing positional annotations for COQ2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_372480 | chr4_83267207_- | nonsynonymous SNV | ENST00000311461.7 | c.A953G | p.K318R | D | B | N |
CAediting_372480 | chr4_83267207_- | nonsynonymous SNV | ENST00000503915.4 | c.A644G | p.K215R | D | B | N |
CAediting_372481 | chr4_83267208_- | nonsynonymous SNV | ENST00000311461.7 | c.A952G | p.K318E | D | B | N |
CAediting_372481 | chr4_83267208_- | nonsynonymous SNV | ENST00000503915.4 | c.A643G | p.K215E | D | B | N |
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CAeditome ID | Position | Variant type |
CAediting_372450 | chr4_83264493_- | intronic |
CAediting_372451 | chr4_83264575_- | intronic |
CAediting_372452 | chr4_83264596_- | intronic |
CAediting_372453 | chr4_83264618_- | intronic |
CAediting_372454 | chr4_83264634_- | intronic |
CAediting_372455 | chr4_83264638_- | intronic |
CAediting_372456 | chr4_83265404_- | intronic |
CAediting_372457 | chr4_83265460_- | intronic |
CAediting_372458 | chr4_83265489_- | intronic |
CAediting_372459 | chr4_83265490_- | intronic |
CAediting_372460 | chr4_83265696_- | intronic |
CAediting_372461 | chr4_83265776_- | intronic |
CAediting_372462 | chr4_83265780_- | intronic |
CAediting_372463 | chr4_83265802_- | intronic |
CAediting_372464 | chr4_83265803_- | intronic |
CAediting_372465 | chr4_83265844_- | intronic |
CAediting_372466 | chr4_83265897_- | intronic |
CAediting_372467 | chr4_83265915_- | intronic |
CAediting_372468 | chr4_83265960_- | intronic |
CAediting_372469 | chr4_83266443_- | intronic |
CAediting_372470 | chr4_83266496_- | intronic |
CAediting_372471 | chr4_83266522_- | intronic |
CAediting_372472 | chr4_83266526_- | intronic |
CAediting_372473 | chr4_83266533_- | intronic |
CAediting_372474 | chr4_83266535_- | intronic |
CAediting_372475 | chr4_83266536_- | intronic |
CAediting_372476 | chr4_83266553_- | intronic |
CAediting_372477 | chr4_83266561_- | intronic |
CAediting_372478 | chr4_83266588_- | intronic |
CAediting_372479 | chr4_83267173_- | exonic |
CAediting_372480 | chr4_83267207_- | exonic |
CAediting_372481 | chr4_83267208_- | exonic |
CAediting_372482 | chr4_83274032_- | ncRNA_intronic |
CAediting_372483 | chr4_83274034_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_372450 | chr4_83264493_- | SINE | Alu | AluJb |
CAediting_372451 | chr4_83264575_- | SINE | Alu | AluJb |
CAediting_372452 | chr4_83264596_- | SINE | Alu | AluJb |
CAediting_372453 | chr4_83264618_- | SINE | Alu | AluJb |
CAediting_372454 | chr4_83264634_- | SINE | Alu | AluJb |
CAediting_372455 | chr4_83264638_- | SINE | Alu | AluJb |
CAediting_372456 | chr4_83265404_- | SINE | Alu | AluSz6 |
CAediting_372457 | chr4_83265460_- | SINE | Alu | AluSz6 |
CAediting_372458 | chr4_83265489_- | SINE | Alu | AluSz6 |
CAediting_372459 | chr4_83265490_- | SINE | Alu | AluSz6 |
CAediting_372460 | chr4_83265696_- | SINE | Alu | AluSz |
CAediting_372461 | chr4_83265776_- | SINE | Alu | AluSz |
CAediting_372462 | chr4_83265780_- | SINE | Alu | AluSz |
CAediting_372463 | chr4_83265802_- | SINE | Alu | AluSz |
CAediting_372464 | chr4_83265803_- | SINE | Alu | AluSz |
CAediting_372465 | chr4_83265844_- | SINE | Alu | AluSz |
CAediting_372466 | chr4_83265897_- | SINE | Alu | AluSz |
CAediting_372467 | chr4_83265915_- | SINE | Alu | AluSz |
CAediting_372468 | chr4_83265960_- | SINE | Alu | AluSz |
CAediting_372469 | chr4_83266443_- | SINE | Alu | AluSx1 |
CAediting_372470 | chr4_83266496_- | SINE | Alu | AluSx1 |
CAediting_372471 | chr4_83266522_- | SINE | Alu | AluSx1 |
CAediting_372472 | chr4_83266526_- | SINE | Alu | AluSx1 |
CAediting_372473 | chr4_83266533_- | SINE | Alu | AluSx1 |
CAediting_372474 | chr4_83266535_- | SINE | Alu | AluSx1 |
CAediting_372475 | chr4_83266536_- | SINE | Alu | AluSx1 |
CAediting_372476 | chr4_83266553_- | SINE | Alu | AluSx1 |
CAediting_372477 | chr4_83266561_- | SINE | Alu | AluSx1 |
CAediting_372478 | chr4_83266588_- | SINE | Alu | AluSx1 |
CAediting_372479 | chr4_83267173_- | SINE | Alu | AluJr |
CAediting_372480 | chr4_83267207_- | SINE | Alu | AluJr |
CAediting_372481 | chr4_83267208_- | SINE | Alu | AluJr |
CAediting_372482 | chr4_83274032_- | SINE | Alu | AluJr |
CAediting_372483 | chr4_83274034_- | SINE | Alu | AluJr |
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RNA A-to-I editing events in the alternative splicing sites for COQ2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_372480 | chr4_83267207_- | 83267206:83267228 | 3SS | 2+0i | ATTTTTTTTATTTTTTGTAGAAA | 8.65 | ATTTTTTTTATTTTTTGTAGAGA | 8.04 |
ES | CAediting_372481 | chr4_83267208_- | 83267206:83267228 | 3SS | 1+0i | ATTTTTTTTATTTTTTGTAGAAA | 8.65 | ATTTTTTTTATTTTTTGTAGGAA | 9.87 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for COQ2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for COQ2 |
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The effects of the RNA editing to the miRNA binding sites for COQ2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_86358 | chr1_109598906_+ | ENSG00000173085.12 | ENST00000503391 | hsa-miR-197-5p | 83261544 | 83261550 | 7mer-m8 | 83261543 | 83261565 | 153 | -22.03 |
CAediting_442554 | chr5_154685830_+ | ENSG00000173085.12 | ENST00000503915 | hsa-miR-1303 | 83264308 | 83264314 | 7mer-m8 | 83264307 | 83264328 | 144 | -11.55 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000173085.12 | ENST00000311461 | hsa-miR-548aa | 83266870 | 83266876 | 7mer-m8 | 83266869 | 83266893 | 154 | -11.26 |
CAediting_1524209 | chrX_134546392_- | ENSG00000173085.12 | ENST00000503391 | hsa-miR-503-5p | 83267619 | 83267625 | 7mer-m8 | 83267618 | 83267645 | 149 | -25.64 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for COQ2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000503915.4 | nonsense_mediated_decay | ![]() | ![]() |
ENST00000311461.7 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_372479 | ENST00000503915.4 | chr4_83267173_- | -359.30 | -356.90 | -360.60 |
CAediting_372480 | ENST00000503915.4 | chr4_83267207_- | -358.60 | -356.90 | -360.60 |
CAediting_372481 | ENST00000503915.4 | chr4_83267208_- | -356.70 | -356.90 | -360.60 |
CAediting_372479 | ENST00000311461.7 | chr4_83267173_- | -499.90 | -498.90 | -502.10 |
CAediting_372480 | ENST00000311461.7 | chr4_83267207_- | -500.60 | -498.90 | -502.10 |
CAediting_372481 | ENST00000311461.7 | chr4_83267208_- | -498.10 | -498.90 | -502.10 |
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Relation with ADAR for COQ2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for COQ2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for COQ2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for COQ2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for COQ2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
COQ2 | C3551954 | COENZYME Q10 DEFICIENCY, PRIMARY, 1 | 12 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
COQ2 | C3714927 | MULTIPLE SYSTEM ATROPHY 1, SUSCEPTIBILITY TO | 4 | GENOMICS_ENGLAND;UNIPROT |
COQ2 | C0270733 | Striatonigral Degeneration | 1 | ORPHANET |
COQ2 | C1843920 | COENZYME Q10 DEFICIENCY | 1 | GENOMICS_ENGLAND |