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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TAF5L (CAeditome ID:27097) |
Gene summary for TAF5L |
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Gene information | Gene symbol | TAF5L | Gene ID | 27097 |
Gene name | TATA-box binding protein associated factor 5 like | |
Synonyms | PAF65B | |
Cytomap | 1q42.13 | |
Type of gene | protein-coding | |
Description | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5LPAF65-betaPCAF-associated factor 65 betaTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa | |
Modification date | 20210518 | |
UniProtAcc | O75529 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TAF5L | GO:0003713 | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L | 11564863 |
TAF5L | GO:0043966 | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L | 11564863 |
TAF5L | GO:0005634 | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L | 11564863 |
TAF5L | GO:0016607 | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L | 0000052 |
TAF5L | GO:0036464 | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L | 0000052 |
TAF5L | GO:0030914 | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L | 11564863 |
TAF5L | GO:0033276 | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L | 10373431 |
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RNA A-to-I events for TAF5L |
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CAediting_145269(229596056, -), CAediting_145270(229596198, -), CAediting_145271(229599514, -), CAediting_145272(229599557, -), CAediting_145273(229602713, -), CAediting_145274(229613292, -), CAediting_145275(229613296, -), CAediting_145276(229623150, -), CAediting_145277(229623152, -), |
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RNA editing positional annotations for TAF5L using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_145273 | chr1_229602713_- | nonsynonymous SNV | ENST00000258281.5 | c.A454G | p.N152D | D | P | D |
CAediting_145273 | chr1_229602713_- | nonsynonymous SNV | ENST00000366675.3 | c.A454G | p.N152D | D | P | D |
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CAeditome ID | Position | Variant type |
CAediting_145269 | chr1_229596056_- | intronic |
CAediting_145270 | chr1_229596198_- | intronic |
CAediting_145271 | chr1_229599514_- | UTR3 |
CAediting_145272 | chr1_229599557_- | UTR3 |
CAediting_145273 | chr1_229602713_- | exonic |
CAediting_145274 | chr1_229613292_- | ncRNA_intronic |
CAediting_145275 | chr1_229613296_- | ncRNA_intronic |
CAediting_145276 | chr1_229623150_- | ncRNA_intronic |
CAediting_145277 | chr1_229623152_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_145269 | chr1_229596056_- | SINE | Alu | AluJb |
CAediting_145270 | chr1_229596198_- | SINE | Alu | AluJb |
CAediting_145271 | chr1_229599514_- | LINE | L1 | L1MB7 |
CAediting_145272 | chr1_229599557_- | LINE | L1 | L1MB7 |
CAediting_145274 | chr1_229613292_- | SINE | Alu | AluJb |
CAediting_145275 | chr1_229613296_- | SINE | Alu | AluJb |
CAediting_145276 | chr1_229623150_- | SINE | Alu | AluSq2 |
CAediting_145277 | chr1_229623152_- | SINE | Alu | AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for TAF5L |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TAF5L |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TAF5L |
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The effects of the RNA editing to the miRNA binding sites for TAF5L |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-130b-5p | 229599557 | 229599563 | 7mer-m8 | 229599556 | 229599575 | 155.00 | -14.06 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-2682-3p | 229599555 | 229599561 | 7mer-m8 | 229599554 | 229599575 | 147.00 | -15.39 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-3176 | 229599552 | 229599558 | 7mer-m8 | 229599551 | 229599569 | 140.00 | -15.96 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-3922-3p | 229599552 | 229599558 | 7mer-m8 | 229599551 | 229599570 | 142.00 | -16.39 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-4757-5p | 229599553 | 229599560 | 8mer-1a | 229599553 | 229599575 | 159.00 | -21.09 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-6744-3p | 229599553 | 229599560 | 8mer-1a | 229599553 | 229599575 | 145.00 | -19.83 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-6781-3p | 229599555 | 229599561 | 7mer-m8 | 229599554 | 229599575 | 155.00 | -17.58 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-6878-3p | 229599553 | 229599559 | 7mer-m8 | 229599552 | 229599572 | 150.00 | -22.33 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-103a-1-5p | 229599555 | 229599561 | 7mer-m8 | 229599554 | 229599574 | 149 | -17.35 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-103a-2-5p | 229599555 | 229599561 | 7mer-m8 | 229599554 | 229599574 | 149 | -13.5 |
CAediting_145272 | chr1_229599557_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-6815-3p | 229599553 | 229599560 | 8mer-1a | 229599553 | 229599573 | 150 | -15.78 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-200b-3p | 229601993 | 229602000 | 8mer-1a | 229601993 | 229602013 | 155 | -14.69 |
CAediting_393 | chr1_1167164_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-200b-3p | 229601430 | 229601437 | 8mer-1a | 229601430 | 229601450 | 146 | -11.82 |
CAediting_980496 | chr14_31014685_- | ENSG00000135801.8 | ENST00000366674 | hsa-miR-624-3p | 229614173 | 229614179 | 7mer-m8 | 229614172 | 229614192 | 145 | -15.03 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000135801.8 | ENST00000258281 | hsa-miR-548aa | 229593343 | 229593349 | 7mer-m8 | 229593342 | 229593365 | 154 | -18.88 |
CAediting_604450 | chr7_133034877_- | ENSG00000135801.8 | ENST00000258281 | hsa-miR-3654 | 229593901 | 229593907 | 7mer-m8 | 229593900 | 229593920 | 149 | -20.9 |
CAediting_524911 | chr7_5495852_- | ENSG00000135801.8 | ENST00000258281 | hsa-miR-589-3p | 229593222 | 229593229 | 8mer-1a | 229593222 | 229593245 | 142 | -14.01 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-548aa | 229600209 | 229600215 | 7mer-m8 | 229600208 | 229600234 | 151 | -14.61 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-548aa | 229601682 | 229601688 | 7mer-m8 | 229601681 | 229601705 | 154 | -13.89 |
CAediting_1368054 | chr19_46709310_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-320e | 229601589 | 229601595 | 7mer-m8 | 229601588 | 229601605 | 140 | -13.38 |
CAediting_442554 | chr5_154685830_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-1303 | 229601054 | 229601061 | 8mer-1a | 229601054 | 229601075 | 140 | -11.44 |
CAediting_468389 | chr6_31355314_- | ENSG00000135801.8 | ENST00000258281 | hsa-miR-6891-5p | 229594191 | 229594197 | 7mer-m8 | 229594190 | 229594208 | 157 | -24.32 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1306323 | chr19_13836462_- | ENSG00000135801.8 | ENST00000258281 | hsa-miR-27a-3p | 229594205 | 229594212 | 8mer-1a | 229594205 | 229594224 | 148 | -12.36 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000135801.8 | ENST00000258281 | hsa-miR-548aa | 229593661 | 229593667 | 7mer-m8 | 229593660 | 229593684 | 140 | -7.99 |
CAediting_1160181 | chr17_7017644_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-195-3p | 229600062 | 229600069 | 8mer-1a | 229600062 | 229600083 | 140 | -4.28 |
CAediting_1160181 | chr17_7017644_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-195-3p | 229601241 | 229601247 | 7mer-m8 | 229601240 | 229601261 | 140 | -13.53 |
CAediting_393 | chr1_1167164_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-200b-3p | 229601966 | 229601972 | 7mer-m8 | 229601965 | 229601986 | 155 | -12.58 |
CAediting_393 | chr1_1167164_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-200b-3p | 229599842 | 229599848 | 7mer-m8 | 229599830 | 229599849 | 153 | -11.71 |
CAediting_393 | chr1_1167164_+ | ENSG00000135801.8 | ENST00000366675 | hsa-miR-200b-3p | 229599831 | 229599837 | 7mer-m8 | 229599830 | 229599849 | 153 | -11.71 |
CAediting_1368054 | chr19_46709310_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-320e | 229599904 | 229599910 | 7mer-m8 | 229599903 | 229599920 | 148 | -11.68 |
CAediting_524911 | chr7_5495852_- | ENSG00000135801.8 | ENST00000366675 | hsa-miR-589-3p | 229599389 | 229599395 | 7mer-m8 | 229599388 | 229599409 | 146 | -13.44 |
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The effects of the RNA editing to the stability of the RNA structures for TAF5L |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000258281.5 | protein_coding | ![]() | ![]() |
ENST00000366676.4 | protein_coding | ![]() | ![]() |
ENST00000366675.3 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_145273 | ENST00000258281.5 | chr1_229602713_- | -1049.50 | -1046.00 | -1049.50 |
CAediting_145273 | ENST00000366676.4 | chr1_229602713_- | -958.30 | -954.80 | -958.30 |
CAediting_145271 | ENST00000366675.3 | chr1_229599514_- | -1068.50 | -1068.50 | -1074.80 |
CAediting_145272 | ENST00000366675.3 | chr1_229599557_- | -1071.30 | -1068.50 | -1074.80 |
CAediting_145273 | ENST00000366675.3 | chr1_229602713_- | -1072.00 | -1068.50 | -1074.80 |
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Relation with ADAR for TAF5L |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TAF5L |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TAF5L |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TAF5L |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TAF5L |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |