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Editing gene: TRAPPC3 (CAeditome ID:27095)

Gene summary for TRAPPC3

Gene summary

Gene information	Gene symbol	TRAPPC3
	Gene ID	27095
	Gene name	trafficking protein particle complex subunit 3
	Synonyms	BET3
	Cytomap	1p34.3
	Type of gene	protein-coding
	Description	trafficking protein particle complex subunit 3trafficking protein particle complex 3
	Modification date	20210518
	UniProtAcc	O43617
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
TRAPPC3	GO:0005794	Trafficking protein particle complex subunit 3	0000052
TRAPPC3	GO:0005829	Trafficking protein particle complex subunit 3	0000052
TRAPPC3	GO:0030008	Trafficking protein particle complex subunit 3	21525244

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RNA A-to-I events for TRAPPC3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000054116.10

RNA A-to-I editing events in Cancer.

CAediting_45859(36138724, -), CAediting_45860(36138765, -), CAediting_45861(36138771, -), CAediting_45862(36138772, -), CAediting_45863(36138777, -), CAediting_45864(36138786, -), CAediting_45865(36138801, -), CAediting_45866(36138809, -), CAediting_45867(36138819, -), CAediting_45868(36138826, -), CAediting_45869(36138839, -), CAediting_45870(36138861, -), CAediting_45871(36138865, -), CAediting_45872(36138868, -), CAediting_45873(36138874, -), CAediting_45874(36138912, -), CAediting_45875(36138924, -), CAediting_45876(36138927, -), CAediting_45877(36138936, -), CAediting_45878(36138952, -), CAediting_45879(36138953, -), CAediting_45880(36138954, -), CAediting_45881(36138973, -), CAediting_45882(36138974, -), CAediting_45883(36138976, -), CAediting_45884(36138979, -), CAediting_45885(36138989, -), CAediting_45886(36138997, -), CAediting_45887(36139005, -), CAediting_45888(36139023, -), CAediting_45889(36139168, -), CAediting_45890(36139171, -), CAediting_45891(36139188, -), CAediting_45892(36139189, -), CAediting_45893(36139194, -), CAediting_45894(36139196, -), CAediting_45895(36139221, -), CAediting_45896(36139224, -), CAediting_45897(36139226, -), CAediting_45898(36139231, -), CAediting_45899(36139242, -), CAediting_45900(36139248, -), CAediting_45901(36139255, -), CAediting_45902(36139267, -), CAediting_45903(36139269, -), CAediting_45904(36139282, -), CAediting_45905(36139290, -), CAediting_45906(36139295, -), CAediting_45907(36139296, -), CAediting_45908(36139302, -), CAediting_45909(36139331, -), CAediting_45910(36139333, -), CAediting_45911(36139336, -), CAediting_45912(36139346, -), CAediting_45913(36139351, -), CAediting_45914(36139352, -), CAediting_45915(36139353, -), CAediting_45916(36139359, -), CAediting_45917(36139362, -), CAediting_45918(36139371, -), CAediting_45919(36139374, -), CAediting_45920(36139376, -), CAediting_45921(36139377, -), CAediting_45922(36139382, -), CAediting_45923(36139385, -), CAediting_45924(36139390, -), CAediting_45925(36139395, -), CAediting_45926(36139420, -), CAediting_45927(36139428, -), CAediting_45928(36139429, -), CAediting_45929(36139435, -), CAediting_45930(36139437, -), CAediting_45931(36142932, -), CAediting_45932(36143018, -), CAediting_45933(36144160, -), CAediting_45934(36144180, -), CAediting_45935(36144449, -), CAediting_45936(36144456, -), CAediting_45937(36144473, -), CAediting_45938(36144486, -), CAediting_45939(36144532, -), CAediting_45940(36144554, -), CAediting_45941(36144559, -), CAediting_45942(36144571, -), CAediting_45943(36144578, -), CAediting_45944(36144620, -), CAediting_45945(36145107, -), CAediting_45946(36145133, -), CAediting_45947(36145137, -), CAediting_45948(36145264, -), CAediting_45949(36145301, -), CAediting_45950(36145302, -), CAediting_45951(36145308, -), CAediting_45952(36145885, -), CAediting_45953(36146004, -), CAediting_45954(36146184, -), CAediting_45955(36146190, -), CAediting_45956(36146207, -), CAediting_45957(36146217, -), CAediting_45958(36147106, -), CAediting_45959(36147107, -), CAediting_45960(36147121, -), CAediting_45961(36147199, -), CAediting_45962(36147201, -), CAediting_45963(36147211, -), CAediting_45964(36147271, -), CAediting_45965(36147471, -), CAediting_45966(36147512, -), CAediting_45967(36147532, -), CAediting_45968(36147544, -), CAediting_45969(36147558, -), CAediting_45970(36147561, -), CAediting_45971(36147562, -), CAediting_45972(36147567, -), CAediting_45973(36148519, -),

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RNA editing positional annotations for TRAPPC3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_45859	chr1_36138724_-	ncRNA_intronic
CAediting_45860	chr1_36138765_-	ncRNA_intronic
CAediting_45861	chr1_36138771_-	ncRNA_intronic
CAediting_45862	chr1_36138772_-	ncRNA_intronic
CAediting_45863	chr1_36138777_-	ncRNA_intronic
CAediting_45864	chr1_36138786_-	ncRNA_intronic
CAediting_45865	chr1_36138801_-	ncRNA_intronic
CAediting_45866	chr1_36138809_-	ncRNA_intronic
CAediting_45867	chr1_36138819_-	ncRNA_intronic
CAediting_45868	chr1_36138826_-	ncRNA_intronic
CAediting_45869	chr1_36138839_-	ncRNA_intronic
CAediting_45870	chr1_36138861_-	ncRNA_intronic
CAediting_45871	chr1_36138865_-	ncRNA_intronic
CAediting_45872	chr1_36138868_-	ncRNA_intronic
CAediting_45873	chr1_36138874_-	ncRNA_intronic
CAediting_45874	chr1_36138912_-	ncRNA_intronic
CAediting_45875	chr1_36138924_-	ncRNA_intronic
CAediting_45876	chr1_36138927_-	ncRNA_intronic
CAediting_45877	chr1_36138936_-	ncRNA_intronic
CAediting_45878	chr1_36138952_-	ncRNA_intronic
CAediting_45879	chr1_36138953_-	ncRNA_intronic
CAediting_45880	chr1_36138954_-	ncRNA_intronic
CAediting_45881	chr1_36138973_-	ncRNA_intronic
CAediting_45882	chr1_36138974_-	ncRNA_intronic
CAediting_45883	chr1_36138976_-	ncRNA_intronic
CAediting_45884	chr1_36138979_-	ncRNA_intronic
CAediting_45885	chr1_36138989_-	ncRNA_intronic
CAediting_45886	chr1_36138997_-	ncRNA_intronic
CAediting_45887	chr1_36139005_-	ncRNA_intronic
CAediting_45888	chr1_36139023_-	ncRNA_intronic
CAediting_45889	chr1_36139168_-	ncRNA_intronic
CAediting_45890	chr1_36139171_-	ncRNA_intronic
CAediting_45891	chr1_36139188_-	ncRNA_intronic
CAediting_45892	chr1_36139189_-	ncRNA_intronic
CAediting_45893	chr1_36139194_-	ncRNA_intronic
CAediting_45894	chr1_36139196_-	ncRNA_intronic
CAediting_45895	chr1_36139221_-	ncRNA_intronic
CAediting_45896	chr1_36139224_-	ncRNA_intronic
CAediting_45897	chr1_36139226_-	ncRNA_intronic
CAediting_45898	chr1_36139231_-	ncRNA_intronic
CAediting_45899	chr1_36139242_-	ncRNA_intronic
CAediting_45900	chr1_36139248_-	ncRNA_intronic
CAediting_45901	chr1_36139255_-	ncRNA_intronic
CAediting_45902	chr1_36139267_-	ncRNA_intronic
CAediting_45903	chr1_36139269_-	ncRNA_intronic
CAediting_45904	chr1_36139282_-	ncRNA_intronic
CAediting_45905	chr1_36139290_-	ncRNA_intronic
CAediting_45906	chr1_36139295_-	ncRNA_intronic
CAediting_45907	chr1_36139296_-	ncRNA_intronic
CAediting_45908	chr1_36139302_-	ncRNA_intronic
CAediting_45909	chr1_36139331_-	ncRNA_intronic
CAediting_45910	chr1_36139333_-	ncRNA_intronic
CAediting_45911	chr1_36139336_-	ncRNA_intronic
CAediting_45912	chr1_36139346_-	ncRNA_intronic
CAediting_45913	chr1_36139351_-	ncRNA_intronic
CAediting_45914	chr1_36139352_-	ncRNA_intronic
CAediting_45915	chr1_36139353_-	ncRNA_intronic
CAediting_45916	chr1_36139359_-	ncRNA_intronic
CAediting_45917	chr1_36139362_-	ncRNA_intronic
CAediting_45918	chr1_36139371_-	ncRNA_intronic
CAediting_45919	chr1_36139374_-	ncRNA_intronic
CAediting_45920	chr1_36139376_-	ncRNA_intronic
CAediting_45921	chr1_36139377_-	ncRNA_intronic
CAediting_45922	chr1_36139382_-	ncRNA_intronic
CAediting_45923	chr1_36139385_-	ncRNA_intronic
CAediting_45924	chr1_36139390_-	ncRNA_intronic
CAediting_45925	chr1_36139395_-	ncRNA_intronic
CAediting_45926	chr1_36139420_-	ncRNA_exonic
CAediting_45927	chr1_36139428_-	ncRNA_exonic
CAediting_45928	chr1_36139429_-	ncRNA_exonic
CAediting_45929	chr1_36139435_-	ncRNA_exonic
CAediting_45930	chr1_36139437_-	ncRNA_exonic
CAediting_45931	chr1_36142932_-	ncRNA_intronic
CAediting_45932	chr1_36143018_-	ncRNA_intronic
CAediting_45933	chr1_36144160_-	ncRNA_intronic
CAediting_45934	chr1_36144180_-	ncRNA_intronic
CAediting_45935	chr1_36144449_-	ncRNA_intronic
CAediting_45936	chr1_36144456_-	ncRNA_intronic
CAediting_45937	chr1_36144473_-	ncRNA_intronic
CAediting_45938	chr1_36144486_-	ncRNA_intronic
CAediting_45939	chr1_36144532_-	ncRNA_intronic
CAediting_45940	chr1_36144554_-	ncRNA_intronic
CAediting_45941	chr1_36144559_-	ncRNA_intronic
CAediting_45942	chr1_36144571_-	ncRNA_intronic
CAediting_45943	chr1_36144578_-	ncRNA_intronic
CAediting_45944	chr1_36144620_-	ncRNA_intronic
CAediting_45945	chr1_36145107_-	ncRNA_intronic
CAediting_45946	chr1_36145133_-	ncRNA_intronic
CAediting_45947	chr1_36145137_-	ncRNA_intronic
CAediting_45948	chr1_36145264_-	ncRNA_intronic
CAediting_45949	chr1_36145301_-	ncRNA_intronic
CAediting_45950	chr1_36145302_-	ncRNA_intronic
CAediting_45951	chr1_36145308_-	ncRNA_intronic
CAediting_45952	chr1_36145885_-	ncRNA_intronic
CAediting_45953	chr1_36146004_-	ncRNA_intronic
CAediting_45954	chr1_36146184_-	ncRNA_intronic
CAediting_45955	chr1_36146190_-	ncRNA_intronic
CAediting_45956	chr1_36146207_-	ncRNA_intronic
CAediting_45957	chr1_36146217_-	ncRNA_intronic
CAediting_45958	chr1_36147106_-	ncRNA_intronic
CAediting_45959	chr1_36147107_-	ncRNA_intronic
CAediting_45960	chr1_36147121_-	ncRNA_intronic
CAediting_45961	chr1_36147199_-	ncRNA_intronic
CAediting_45962	chr1_36147201_-	ncRNA_intronic
CAediting_45963	chr1_36147211_-	ncRNA_intronic
CAediting_45964	chr1_36147271_-	ncRNA_intronic
CAediting_45965	chr1_36147471_-	ncRNA_intronic
CAediting_45966	chr1_36147512_-	ncRNA_intronic
CAediting_45967	chr1_36147532_-	ncRNA_intronic
CAediting_45968	chr1_36147544_-	ncRNA_intronic
CAediting_45969	chr1_36147558_-	ncRNA_intronic
CAediting_45970	chr1_36147561_-	ncRNA_intronic
CAediting_45971	chr1_36147562_-	ncRNA_intronic
CAediting_45972	chr1_36147567_-	ncRNA_intronic
CAediting_45973	chr1_36148519_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_45859	chr1_36138724_-	SINE	MIR	MIR
CAediting_45860	chr1_36138765_-	SINE	Alu	AluSp
CAediting_45861	chr1_36138771_-	SINE	Alu	AluSp
CAediting_45862	chr1_36138772_-	SINE	Alu	AluSp
CAediting_45863	chr1_36138777_-	SINE	Alu	AluSp
CAediting_45864	chr1_36138786_-	SINE	Alu	AluSp
CAediting_45865	chr1_36138801_-	SINE	Alu	AluSp
CAediting_45866	chr1_36138809_-	SINE	Alu	AluSp
CAediting_45867	chr1_36138819_-	SINE	Alu	AluSp
CAediting_45868	chr1_36138826_-	SINE	Alu	AluSp
CAediting_45869	chr1_36138839_-	SINE	Alu	AluSp
CAediting_45870	chr1_36138861_-	SINE	Alu	AluSp
CAediting_45871	chr1_36138865_-	SINE	Alu	AluSp
CAediting_45872	chr1_36138868_-	SINE	Alu	AluSp
CAediting_45873	chr1_36138874_-	SINE	Alu	AluSp
CAediting_45874	chr1_36138912_-	SINE	Alu	AluSp
CAediting_45875	chr1_36138924_-	SINE	Alu	AluSp
CAediting_45876	chr1_36138927_-	SINE	Alu	AluSp
CAediting_45877	chr1_36138936_-	SINE	Alu	AluSp
CAediting_45878	chr1_36138952_-	SINE	Alu	AluSp
CAediting_45879	chr1_36138953_-	SINE	Alu	AluSp
CAediting_45880	chr1_36138954_-	SINE	Alu	AluSp
CAediting_45881	chr1_36138973_-	SINE	Alu	AluSp
CAediting_45882	chr1_36138974_-	SINE	Alu	AluSp
CAediting_45883	chr1_36138976_-	SINE	Alu	AluSp
CAediting_45884	chr1_36138979_-	SINE	Alu	AluSp
CAediting_45885	chr1_36138989_-	SINE	Alu	AluSp
CAediting_45886	chr1_36138997_-	SINE	Alu	AluSp
CAediting_45887	chr1_36139005_-	SINE	Alu	AluSp
CAediting_45888	chr1_36139023_-	SINE	Alu	AluSp
CAediting_45889	chr1_36139168_-	SINE	Alu	AluSg7
CAediting_45890	chr1_36139171_-	SINE	Alu	AluSg7
CAediting_45891	chr1_36139188_-	SINE	Alu	AluSg7
CAediting_45892	chr1_36139189_-	SINE	Alu	AluSg7
CAediting_45893	chr1_36139194_-	SINE	Alu	AluSg7
CAediting_45894	chr1_36139196_-	SINE	Alu	AluSg7
CAediting_45895	chr1_36139221_-	SINE	Alu	AluSg7
CAediting_45896	chr1_36139224_-	SINE	Alu	AluSg7
CAediting_45897	chr1_36139226_-	SINE	Alu	AluSg7
CAediting_45898	chr1_36139231_-	SINE	Alu	AluSg7
CAediting_45899	chr1_36139242_-	SINE	Alu	AluSg7
CAediting_45900	chr1_36139248_-	SINE	Alu	AluSg7
CAediting_45901	chr1_36139255_-	SINE	Alu	AluSg7
CAediting_45902	chr1_36139267_-	SINE	Alu	AluSg7
CAediting_45903	chr1_36139269_-	SINE	Alu	AluSg7
CAediting_45904	chr1_36139282_-	SINE	Alu	AluSg7
CAediting_45905	chr1_36139290_-	SINE	Alu	AluSg7
CAediting_45906	chr1_36139295_-	SINE	Alu	AluSg7
CAediting_45907	chr1_36139296_-	SINE	Alu	AluSg7
CAediting_45908	chr1_36139302_-	SINE	Alu	AluSg7
CAediting_45909	chr1_36139331_-	SINE	Alu	AluSg7
CAediting_45910	chr1_36139333_-	SINE	Alu	AluSg7
CAediting_45911	chr1_36139336_-	SINE	Alu	AluSg7
CAediting_45912	chr1_36139346_-	SINE	Alu	AluSg7
CAediting_45913	chr1_36139351_-	SINE	Alu	AluSg7
CAediting_45914	chr1_36139352_-	SINE	Alu	AluSg7
CAediting_45915	chr1_36139353_-	SINE	Alu	AluSg7
CAediting_45916	chr1_36139359_-	SINE	Alu	AluSg7
CAediting_45917	chr1_36139362_-	SINE	Alu	AluSg7
CAediting_45918	chr1_36139371_-	SINE	Alu	AluSg7
CAediting_45919	chr1_36139374_-	SINE	Alu	AluSg7
CAediting_45920	chr1_36139376_-	SINE	Alu	AluSg7
CAediting_45921	chr1_36139377_-	SINE	Alu	AluSg7
CAediting_45922	chr1_36139382_-	SINE	Alu	AluSg7
CAediting_45923	chr1_36139385_-	SINE	Alu	AluSg7
CAediting_45924	chr1_36139390_-	SINE	Alu	AluSg7
CAediting_45925	chr1_36139395_-	SINE	Alu	AluSg7
CAediting_45926	chr1_36139420_-	SINE	Alu	AluSg7
CAediting_45927	chr1_36139428_-	SINE	Alu	AluSg7
CAediting_45928	chr1_36139429_-	SINE	Alu	AluSg7
CAediting_45929	chr1_36139435_-	SINE	Alu	AluSg7
CAediting_45930	chr1_36139437_-	SINE	Alu	AluSg7
CAediting_45931	chr1_36142932_-	SINE	Alu	AluJb
CAediting_45932	chr1_36143018_-	SINE	Alu	AluJb
CAediting_45933	chr1_36144160_-	SINE	Alu	AluSq2
CAediting_45934	chr1_36144180_-	SINE	Alu	AluSq2
CAediting_45935	chr1_36144449_-	SINE	Alu	AluJb
CAediting_45936	chr1_36144456_-	SINE	Alu	AluJb
CAediting_45937	chr1_36144473_-	SINE	Alu	AluJb
CAediting_45938	chr1_36144486_-	SINE	Alu	AluJb
CAediting_45939	chr1_36144532_-	SINE	Alu	AluJb
CAediting_45940	chr1_36144554_-	SINE	Alu	AluJb
CAediting_45941	chr1_36144559_-	SINE	Alu	AluJb
CAediting_45942	chr1_36144571_-	SINE	Alu	AluJb
CAediting_45943	chr1_36144578_-	SINE	Alu	AluJb
CAediting_45944	chr1_36144620_-	SINE	Alu	AluJb
CAediting_45945	chr1_36145107_-	SINE	Alu	AluY
CAediting_45946	chr1_36145133_-	SINE	Alu	AluY
CAediting_45947	chr1_36145137_-	SINE	Alu	AluY
CAediting_45948	chr1_36145264_-	SINE	Alu	AluY
CAediting_45949	chr1_36145301_-	SINE	Alu	AluY
CAediting_45950	chr1_36145302_-	SINE	Alu	AluY
CAediting_45951	chr1_36145308_-	SINE	Alu	AluY
CAediting_45952	chr1_36145885_-	SINE	Alu	AluY
CAediting_45953	chr1_36146004_-	SINE	Alu	AluY
CAediting_45954	chr1_36146184_-	SINE	Alu	AluSc
CAediting_45955	chr1_36146190_-	SINE	Alu	AluSc
CAediting_45956	chr1_36146207_-	SINE	Alu	AluSc
CAediting_45957	chr1_36146217_-	SINE	Alu	AluSc
CAediting_45958	chr1_36147106_-	SINE	Alu	AluSx1
CAediting_45959	chr1_36147107_-	SINE	Alu	AluSx1
CAediting_45960	chr1_36147121_-	SINE	Alu	AluSx1
CAediting_45961	chr1_36147199_-	SINE	Alu	AluSx1
CAediting_45962	chr1_36147201_-	SINE	Alu	AluSx1
CAediting_45963	chr1_36147211_-	SINE	Alu	AluSx1
CAediting_45964	chr1_36147271_-	SINE	Alu	AluSx1
CAediting_45965	chr1_36147471_-	SINE	Alu	AluJb
CAediting_45966	chr1_36147512_-	SINE	Alu	AluJb
CAediting_45967	chr1_36147532_-	SINE	Alu	AluJb
CAediting_45968	chr1_36147544_-	SINE	Alu	AluJb
CAediting_45969	chr1_36147558_-	SINE	Alu	AluJb
CAediting_45970	chr1_36147561_-	SINE	Alu	AluJb
CAediting_45971	chr1_36147562_-	SINE	Alu	AluJb
CAediting_45972	chr1_36147567_-	SINE	Alu	AluJb
CAediting_45973	chr1_36148519_-	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for TRAPPC3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000054116.10.TRAPPC3.

Correlation between RNA A-to-I editing and PSI for ENSG00000054116.10.TRAPPC3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRAPPC3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

GBM.CAediting_45906.ENSG00000054116.TRAPPC3.png
Soverview

GBM.CAediting_45907.ENSG00000054116.TRAPPC3.png
Soverview

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Protein coding region RNA A-to-I editings for TRAPPC3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TRAPPC3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000054116.10	ENST00000616074	hsa-miR-605-3p	36137129	36137135	7mer-m8	36137128	36137149	143	-19.74
CAediting_1306324	chr19_13836464_-	ENSG00000054116.10	ENST00000616074	hsa-miR-27a-3p	36137044	36137050	7mer-m8	36137043	36137064	143	-15.03
CAediting_748296	chr10_51299626_+	ENSG00000054116.10	ENST00000616395	hsa-miR-605-3p	36137129	36137135	7mer-m8	36137128	36137149	143	-19.74
CAediting_1306324	chr19_13836464_-	ENSG00000054116.10	ENST00000616395	hsa-miR-27a-3p	36137044	36137050	7mer-m8	36137043	36137064	143	-15.03
CAediting_748296	chr10_51299626_+	ENSG00000054116.10	ENST00000617904	hsa-miR-605-3p	36137129	36137135	7mer-m8	36137128	36137149	143	-19.74
CAediting_1306324	chr19_13836464_-	ENSG00000054116.10	ENST00000617904	hsa-miR-27a-3p	36137044	36137050	7mer-m8	36137043	36137064	143	-15.03
CAediting_748296	chr10_51299626_+	ENSG00000054116.10	ENST00000373166	hsa-miR-605-3p	36137129	36137135	7mer-m8	36137128	36137149	143	-19.74
CAediting_1306324	chr19_13836464_-	ENSG00000054116.10	ENST00000373166	hsa-miR-27a-3p	36137044	36137050	7mer-m8	36137043	36137064	143	-15.03
CAediting_748296	chr10_51299626_+	ENSG00000054116.10	ENST00000373163	hsa-miR-605-3p	36137129	36137135	7mer-m8	36137128	36137149	143	-19.74
CAediting_1306324	chr19_13836464_-	ENSG00000054116.10	ENST00000373163	hsa-miR-27a-3p	36137044	36137050	7mer-m8	36137043	36137064	143	-15.03
CAediting_748296	chr10_51299626_+	ENSG00000054116.10	ENST00000373162	hsa-miR-605-3p	36137129	36137135	7mer-m8	36137128	36137149	143	-19.74

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TRAPPC3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000497251.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_45926	ENST00000497251.1	chr1_36139420_-	-263.60	-259.10	-263.80
CAediting_45927	ENST00000497251.1	chr1_36139428_-	-261.00	-259.10	-263.80
CAediting_45928	ENST00000497251.1	chr1_36139429_-	-260.60	-259.10	-263.80
CAediting_45929	ENST00000497251.1	chr1_36139435_-	-262.40	-259.10	-263.80
CAediting_45930	ENST00000497251.1	chr1_36139437_-	-260.40	-259.10	-263.80

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Relation with ADAR for TRAPPC3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
GBM	CAediting_45886	chr1_36138997_-	0.00575504078565902	0.36765586972964	.	.	.	.
BRCA	CAediting_45907	chr1_36139296_-	.	.	.	.	0.028408030557833	0.276250702757304
THCA	CAediting_45927	chr1_36139428_-	0.00278078219305539	0.188413678450202	.	.	.	.

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Relation with cancer stages for TRAPPC3

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
THCA	pathologic_stage	CAediting_45875	chr1_36138924_-	0.0319498406565355	0.22507867352423

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Relation with survival for TRAPPC3

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LGG	CAediting_45907	chr1_36139296_-	0.00665794685112642	0.00231204	1328.1

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RelatedDrugs for TRAPPC3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
TRAPPC3	O43617	DB03796	Palmitic Acid	Trafficking protein particle complex subunit 3	SmallMoleculeDrug	approved

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RelatedDiseases for TRAPPC3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene