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Editing gene: LAMP3 (CAeditome ID:27074)

Gene summary for LAMP3

Gene summary

Gene information	Gene symbol	LAMP3
	Gene ID	27074
	Gene name	lysosomal associated membrane protein 3
	Synonyms	CD208\|DC LAMP\|DC-LAMP\|DCLAMP\|LAMP\|LAMP-3\|TSC403
	Cytomap	3q27.1
	Type of gene	protein-coding
	Description	lysosome-associated membrane glycoprotein 3DC-lysosome-associated membrane glycoprotein
	Modification date	20210518
	UniProtAcc	Q9UQV4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
LAMP3	GO:0005769	Lysosome-associated membrane glycoprotein 3	21810281
LAMP3	GO:0005886	Lysosome-associated membrane glycoprotein 3	21810281
LAMP3	GO:0031982	Lysosome-associated membrane glycoprotein 3	25681212
LAMP3	GO:0043231	Lysosome-associated membrane glycoprotein 3	0000052
LAMP3	GO:0048471	Lysosome-associated membrane glycoprotein 3	25681212

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RNA A-to-I events for LAMP3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000078081.6

RNA A-to-I editing events in Cancer.

CAediting_327686(183123296, -), CAediting_327687(183123300, -), CAediting_327688(183123314, -), CAediting_327689(183123315, -), CAediting_327690(183123324, -), CAediting_327691(183123342, -), CAediting_327692(183123367, -), CAediting_327693(183123379, -), CAediting_327694(183123396, -), CAediting_327695(183123435, -), CAediting_327696(183123447, -), CAediting_327697(183123450, -), CAediting_327698(183123533, -), CAediting_327699(183123537, -), CAediting_327700(183124616, -), CAediting_327701(183124650, -), CAediting_327702(183125874, -), CAediting_327703(183125891, -), CAediting_327704(183125892, -), CAediting_327705(183125949, -), CAediting_327706(183126933, -), CAediting_327707(183126956, -), CAediting_327708(183127164, -), CAediting_327709(183127165, -), CAediting_327710(183127168, -), CAediting_327711(183127170, -), CAediting_327712(183127172, -), CAediting_327713(183127195, -), CAediting_327714(183127207, -), CAediting_327715(183127211, -), CAediting_327716(183127227, -), CAediting_327717(183127249, -), CAediting_327718(183127257, -), CAediting_327719(183127262, -), CAediting_327720(183127266, -), CAediting_327721(183127298, -), CAediting_327722(183127301, -), CAediting_327723(183127322, -), CAediting_327724(183127338, -), CAediting_327725(183127351, -), CAediting_327726(183127353, -), CAediting_327727(183127354, -), CAediting_327728(183127362, -), CAediting_327729(183127385, -), CAediting_327730(183127406, -), CAediting_327731(183127408, -), CAediting_327732(183127416, -), CAediting_327733(183127873, -), CAediting_327734(183127875, -), CAediting_327735(183127887, -), CAediting_327736(183127888, -), CAediting_327737(183127906, -), CAediting_327738(183127918, -), CAediting_327739(183127938, -), CAediting_327740(183127942, -), CAediting_327741(183127967, -), CAediting_327742(183128024, -), CAediting_327743(183128026, -), CAediting_327744(183128035, -), CAediting_327745(183128036, -), CAediting_327746(183128040, -), CAediting_327747(183128669, -), CAediting_327748(183128680, -), CAediting_327749(183128706, -), CAediting_327750(183128709, -), CAediting_327751(183128745, -), CAediting_327752(183128760, -), CAediting_327753(183128809, -), CAediting_327754(183128814, -), CAediting_327755(183128817, -), CAediting_327756(183128821, -), CAediting_327757(183128823, -), CAediting_327758(183130264, -), CAediting_327759(183130287, -), CAediting_327760(183130291, -), CAediting_327761(183130297, -), CAediting_327762(183130327, -), CAediting_327763(183130328, -), CAediting_327764(183130363, -), CAediting_327765(183130364, -), CAediting_327766(183130430, -), CAediting_327767(183130431, -), CAediting_327768(183130439, -), CAediting_327769(183133492, -), CAediting_327770(183133628, -), CAediting_327771(183137206, -), CAediting_327772(183137917, -), CAediting_327773(183139224, -), CAediting_327774(183139314, -), CAediting_327775(183150695, -),

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RNA editing positional annotations for LAMP3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_327686	chr3_183123296_-	UTR3
CAediting_327687	chr3_183123300_-	UTR3
CAediting_327688	chr3_183123314_-	UTR3
CAediting_327689	chr3_183123315_-	UTR3
CAediting_327690	chr3_183123324_-	UTR3
CAediting_327691	chr3_183123342_-	UTR3
CAediting_327692	chr3_183123367_-	UTR3
CAediting_327693	chr3_183123379_-	UTR3
CAediting_327694	chr3_183123396_-	UTR3
CAediting_327695	chr3_183123435_-	UTR3
CAediting_327696	chr3_183123447_-	UTR3
CAediting_327697	chr3_183123450_-	UTR3
CAediting_327698	chr3_183123533_-	UTR3
CAediting_327699	chr3_183123537_-	UTR3
CAediting_327700	chr3_183124616_-	intronic
CAediting_327701	chr3_183124650_-	intronic
CAediting_327702	chr3_183125874_-	intronic
CAediting_327703	chr3_183125891_-	intronic
CAediting_327704	chr3_183125892_-	intronic
CAediting_327705	chr3_183125949_-	intronic
CAediting_327706	chr3_183126933_-	intronic
CAediting_327707	chr3_183126956_-	intronic
CAediting_327708	chr3_183127164_-	intronic
CAediting_327709	chr3_183127165_-	intronic
CAediting_327710	chr3_183127168_-	intronic
CAediting_327711	chr3_183127170_-	intronic
CAediting_327712	chr3_183127172_-	intronic
CAediting_327713	chr3_183127195_-	intronic
CAediting_327714	chr3_183127207_-	intronic
CAediting_327715	chr3_183127211_-	intronic
CAediting_327716	chr3_183127227_-	intronic
CAediting_327717	chr3_183127249_-	intronic
CAediting_327718	chr3_183127257_-	intronic
CAediting_327719	chr3_183127262_-	intronic
CAediting_327720	chr3_183127266_-	intronic
CAediting_327721	chr3_183127298_-	intronic
CAediting_327722	chr3_183127301_-	intronic
CAediting_327723	chr3_183127322_-	intronic
CAediting_327724	chr3_183127338_-	intronic
CAediting_327725	chr3_183127351_-	intronic
CAediting_327726	chr3_183127353_-	intronic
CAediting_327727	chr3_183127354_-	intronic
CAediting_327728	chr3_183127362_-	intronic
CAediting_327729	chr3_183127385_-	intronic
CAediting_327730	chr3_183127406_-	intronic
CAediting_327731	chr3_183127408_-	intronic
CAediting_327732	chr3_183127416_-	intronic
CAediting_327733	chr3_183127873_-	intronic
CAediting_327734	chr3_183127875_-	intronic
CAediting_327735	chr3_183127887_-	intronic
CAediting_327736	chr3_183127888_-	intronic
CAediting_327737	chr3_183127906_-	intronic
CAediting_327738	chr3_183127918_-	intronic
CAediting_327739	chr3_183127938_-	intronic
CAediting_327740	chr3_183127942_-	intronic
CAediting_327741	chr3_183127967_-	intronic
CAediting_327742	chr3_183128024_-	intronic
CAediting_327743	chr3_183128026_-	intronic
CAediting_327744	chr3_183128035_-	intronic
CAediting_327745	chr3_183128036_-	intronic
CAediting_327746	chr3_183128040_-	intronic
CAediting_327747	chr3_183128669_-	intronic
CAediting_327748	chr3_183128680_-	intronic
CAediting_327749	chr3_183128706_-	intronic
CAediting_327750	chr3_183128709_-	intronic
CAediting_327751	chr3_183128745_-	intronic
CAediting_327752	chr3_183128760_-	intronic
CAediting_327753	chr3_183128809_-	intronic
CAediting_327754	chr3_183128814_-	intronic
CAediting_327755	chr3_183128817_-	intronic
CAediting_327756	chr3_183128821_-	intronic
CAediting_327757	chr3_183128823_-	intronic
CAediting_327758	chr3_183130264_-	intronic
CAediting_327759	chr3_183130287_-	intronic
CAediting_327760	chr3_183130291_-	intronic
CAediting_327761	chr3_183130297_-	intronic
CAediting_327762	chr3_183130327_-	intronic
CAediting_327763	chr3_183130328_-	intronic
CAediting_327764	chr3_183130363_-	intronic
CAediting_327765	chr3_183130364_-	intronic
CAediting_327766	chr3_183130430_-	intronic
CAediting_327767	chr3_183130431_-	intronic
CAediting_327768	chr3_183130439_-	intronic
CAediting_327769	chr3_183133492_-	intronic
CAediting_327770	chr3_183133628_-	intronic
CAediting_327771	chr3_183137206_-	intronic
CAediting_327772	chr3_183137917_-	intronic
CAediting_327773	chr3_183139224_-	intronic
CAediting_327774	chr3_183139314_-	intronic
CAediting_327775	chr3_183150695_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_327686	chr3_183123296_-	SINE	Alu	AluSq2
CAediting_327687	chr3_183123300_-	SINE	Alu	AluSq2
CAediting_327688	chr3_183123314_-	SINE	Alu	AluSq2
CAediting_327689	chr3_183123315_-	SINE	Alu	AluSq2
CAediting_327690	chr3_183123324_-	SINE	Alu	AluSq2
CAediting_327691	chr3_183123342_-	SINE	Alu	AluSq2
CAediting_327692	chr3_183123367_-	SINE	Alu	AluSq2
CAediting_327693	chr3_183123379_-	SINE	Alu	AluSq2
CAediting_327694	chr3_183123396_-	SINE	Alu	AluSq2
CAediting_327695	chr3_183123435_-	SINE	Alu	AluSq2
CAediting_327696	chr3_183123447_-	SINE	Alu	AluSq2
CAediting_327697	chr3_183123450_-	SINE	Alu	AluSq2
CAediting_327698	chr3_183123533_-	SINE	Alu	AluSq2
CAediting_327699	chr3_183123537_-	SINE	Alu	AluSq2
CAediting_327700	chr3_183124616_-	SINE	Alu	AluSp
CAediting_327701	chr3_183124650_-	SINE	Alu	AluSp
CAediting_327702	chr3_183125874_-	SINE	Alu	AluJo
CAediting_327703	chr3_183125891_-	SINE	Alu	AluJo
CAediting_327704	chr3_183125892_-	SINE	Alu	AluJo
CAediting_327705	chr3_183125949_-	SINE	Alu	AluJo
CAediting_327706	chr3_183126933_-	LINE	L1	HAL1b
CAediting_327707	chr3_183126956_-	LINE	L1	HAL1b
CAediting_327708	chr3_183127164_-	SINE	Alu	AluJr
CAediting_327709	chr3_183127165_-	SINE	Alu	AluJr
CAediting_327710	chr3_183127168_-	SINE	Alu	AluJr
CAediting_327711	chr3_183127170_-	SINE	Alu	AluJr
CAediting_327712	chr3_183127172_-	SINE	Alu	AluJr
CAediting_327713	chr3_183127195_-	SINE	Alu	AluJr
CAediting_327714	chr3_183127207_-	SINE	Alu	AluJr
CAediting_327715	chr3_183127211_-	SINE	Alu	AluJr
CAediting_327716	chr3_183127227_-	SINE	Alu	AluJr
CAediting_327717	chr3_183127249_-	SINE	Alu	AluJr
CAediting_327718	chr3_183127257_-	SINE	Alu	AluJr
CAediting_327719	chr3_183127262_-	SINE	Alu	AluJr
CAediting_327720	chr3_183127266_-	SINE	Alu	AluJr
CAediting_327721	chr3_183127298_-	SINE	Alu	AluJr
CAediting_327722	chr3_183127301_-	SINE	Alu	AluJr
CAediting_327723	chr3_183127322_-	SINE	Alu	AluJr
CAediting_327724	chr3_183127338_-	SINE	Alu	AluJr
CAediting_327725	chr3_183127351_-	SINE	Alu	AluJr
CAediting_327726	chr3_183127353_-	SINE	Alu	AluJr
CAediting_327727	chr3_183127354_-	SINE	Alu	AluJr
CAediting_327728	chr3_183127362_-	SINE	Alu	AluJr
CAediting_327729	chr3_183127385_-	SINE	Alu	AluJr
CAediting_327730	chr3_183127406_-	SINE	Alu	AluJr
CAediting_327731	chr3_183127408_-	SINE	Alu	AluJr
CAediting_327732	chr3_183127416_-	SINE	Alu	AluJr
CAediting_327733	chr3_183127873_-	SINE	Alu	AluY
CAediting_327734	chr3_183127875_-	SINE	Alu	AluY
CAediting_327735	chr3_183127887_-	SINE	Alu	AluY
CAediting_327736	chr3_183127888_-	SINE	Alu	AluY
CAediting_327737	chr3_183127906_-	SINE	Alu	AluY
CAediting_327738	chr3_183127918_-	SINE	Alu	AluY
CAediting_327739	chr3_183127938_-	SINE	Alu	AluY
CAediting_327740	chr3_183127942_-	SINE	Alu	AluY
CAediting_327741	chr3_183127967_-	SINE	Alu	AluY
CAediting_327742	chr3_183128024_-	SINE	Alu	AluY
CAediting_327743	chr3_183128026_-	SINE	Alu	AluY
CAediting_327744	chr3_183128035_-	SINE	Alu	AluY
CAediting_327745	chr3_183128036_-	SINE	Alu	AluY
CAediting_327746	chr3_183128040_-	SINE	Alu	AluY
CAediting_327747	chr3_183128669_-	SINE	Alu	AluJo
CAediting_327748	chr3_183128680_-	SINE	Alu	AluJo
CAediting_327749	chr3_183128706_-	SINE	Alu	AluJo
CAediting_327750	chr3_183128709_-	SINE	Alu	AluJo
CAediting_327751	chr3_183128745_-	SINE	Alu	AluJo
CAediting_327752	chr3_183128760_-	SINE	Alu	AluJo
CAediting_327753	chr3_183128809_-	SINE	Alu	AluJo
CAediting_327754	chr3_183128814_-	SINE	Alu	AluJo
CAediting_327755	chr3_183128817_-	SINE	Alu	AluJo
CAediting_327756	chr3_183128821_-	SINE	Alu	AluJo
CAediting_327757	chr3_183128823_-	SINE	Alu	AluJo
CAediting_327758	chr3_183130264_-	SINE	Alu	AluY
CAediting_327759	chr3_183130287_-	SINE	Alu	AluY
CAediting_327760	chr3_183130291_-	SINE	Alu	AluY
CAediting_327761	chr3_183130297_-	SINE	Alu	AluY
CAediting_327762	chr3_183130327_-	SINE	Alu	AluY
CAediting_327763	chr3_183130328_-	SINE	Alu	AluY
CAediting_327764	chr3_183130363_-	SINE	Alu	AluY
CAediting_327765	chr3_183130364_-	SINE	Alu	AluY
CAediting_327766	chr3_183130430_-	SINE	Alu	AluY
CAediting_327767	chr3_183130431_-	SINE	Alu	AluY
CAediting_327768	chr3_183130439_-	SINE	Alu	AluY
CAediting_327769	chr3_183133492_-	SINE	Alu	AluSz6
CAediting_327770	chr3_183133628_-	SINE	Alu	AluSz6
CAediting_327771	chr3_183137206_-	SINE	Alu	AluSx1
CAediting_327772	chr3_183137917_-	SINE	Alu	AluSx1
CAediting_327773	chr3_183139224_-	SINE	Alu	AluSx1
CAediting_327774	chr3_183139314_-	SINE	Alu	AluSx1
CAediting_327775	chr3_183150695_-	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for LAMP3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
IR	CAediting_327686	chr3_183123296_-	183123296:183123318	3SS	3+0i	CCAAAGTGCTGGGATTACAGGCA	-1.55	CCAAAGTGCTGGGATTACAGGCG	-1.62
IR	CAediting_327687	chr3_183123300_-	183123296:183123318	3SS	0+2i	CCAAAGTGCTGGGATTACAGGCA	-1.55	CCAAAGTGCTGGGATTACGGGCA	-9.51
IR	CAediting_327688	chr3_183123314_-	183123296:183123318	3SS	0+16i	CCAAAGTGCTGGGATTACAGGCA	-1.55	CCAAGGTGCTGGGATTACAGGCA	-1.05
IR	CAediting_327689	chr3_183123315_-	183123296:183123318	3SS	0+17i	CCAAAGTGCTGGGATTACAGGCA	-1.55	CCAGAGTGCTGGGATTACAGGCA	-2.17
IR	CAediting_327695	chr3_183123435_-	183123427:183123435	5SS	3+0i	AGGCACACA	-20.89	GGGCACACA	-23.65

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000078081.6.LAMP3.

Correlation between RNA A-to-I editing and PSI for ENSG00000078081.6.LAMP3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LAMP3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LAMP3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LAMP3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LAMP3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000265598.6	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_327686	ENST00000265598.6	chr3_183123296_-	-944.00	-940.40	-962.80
CAediting_327687	ENST00000265598.6	chr3_183123300_-	-940.80	-940.40	-962.80
CAediting_327688	ENST00000265598.6	chr3_183123314_-	-940.40	-940.40	-962.80
CAediting_327689	ENST00000265598.6	chr3_183123315_-	-943.10	-940.40	-962.80
CAediting_327690	ENST00000265598.6	chr3_183123324_-	-940.90	-940.40	-962.80
CAediting_327691	ENST00000265598.6	chr3_183123342_-	-943.30	-940.40	-962.80
CAediting_327692	ENST00000265598.6	chr3_183123367_-	-941.90	-940.40	-962.80
CAediting_327693	ENST00000265598.6	chr3_183123379_-	-943.50	-940.40	-962.80
CAediting_327694	ENST00000265598.6	chr3_183123396_-	-941.50	-940.40	-962.80
CAediting_327695	ENST00000265598.6	chr3_183123435_-	-939.90	-940.40	-962.80
CAediting_327696	ENST00000265598.6	chr3_183123447_-	-940.40	-940.40	-962.80
CAediting_327697	ENST00000265598.6	chr3_183123450_-	-945.00	-940.40	-962.80
CAediting_327698	ENST00000265598.6	chr3_183123533_-	-943.70	-940.40	-962.80
CAediting_327699	ENST00000265598.6	chr3_183123537_-	-940.30	-940.40	-962.80

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Relation with ADAR for LAMP3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LUAD	CAediting_327709	chr3_183127165_-	0.0085520976119792	0.236138520817997	.	.	.	.
LUSC	CAediting_327709	chr3_183127165_-	0.0159895029109412	0.312434485897639	.	.	.	.
LUAD	CAediting_327714	chr3_183127207_-	0.0012240768345273	0.436275651778813	.	.	.	.

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Relation with cancer stages for LAMP3

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
LUAD	pathologic_stage	CAediting_327730	chr3_183127406_-	0.0208835411220743	0.319665652661316

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Relation with survival for LAMP3

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for LAMP3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LAMP3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
LAMP3	C0021400	Influenza	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene