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Editing gene: PABPC1 (CAeditome ID:26986)

Gene summary for PABPC1

Gene summary

Gene information	Gene symbol	PABPC1
	Gene ID	26986
	Gene name	poly(A) binding protein cytoplasmic 1
	Synonyms	PAB1\|PABP\|PABP1\|PABPC2\|PABPL1
	Cytomap	8q22.3
	Type of gene	protein-coding
	Description	polyadenylate-binding protein 1poly(A) binding protein, cytoplasmic 2
	Modification date	20210518
	UniProtAcc	P11940
	Context	- 34027108(Functional implications of PABPC1 in the development of ovarian cancer)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
PABPC1	GO:0003723	Polyadenylate-binding protein 1	25225333
PABPC1	GO:0003730	Polyadenylate-binding protein 1	16126846
PABPC1	GO:0008143	Polyadenylate-binding protein 1	16804161
PABPC1	GO:0008143	Polyadenylate-binding protein 1	21984414
PABPC1	GO:0008266	Polyadenylate-binding protein 1	21984414
PABPC1	GO:2000623	Polyadenylate-binding protein 1	18447585
PABPC1	GO:0005634	Polyadenylate-binding protein 1	21940797
PABPC1	GO:0005737	Polyadenylate-binding protein 1	28733330
PABPC1	GO:0005829	Polyadenylate-binding protein 1	0000052
PABPC1	GO:0010494	Polyadenylate-binding protein 1	21883093
PABPC1	GO:0010494	Polyadenylate-binding protein 1	21940797
PABPC1	GO:0031252	Polyadenylate-binding protein 1	28733330
PABPC1	GO:0036464	Polyadenylate-binding protein 1	15121898
PABPC1	GO:0071013	Polyadenylate-binding protein 1	11991638
PABPC1	GO:1990904	Polyadenylate-binding protein 1	17289661

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RNA A-to-I events for PABPC1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000070756.12

RNA A-to-I editing events in Cancer.

CAediting_653762(100687930, -), CAediting_653763(100689452, -), CAediting_653764(100689501, -), CAediting_653765(100689502, -), CAediting_653766(100689521, -), CAediting_653767(100689525, -), CAediting_653768(100689566, -), CAediting_653769(100689567, -), CAediting_653770(100689607, -), CAediting_653771(100689671, -), CAediting_653772(100689714, -), CAediting_653773(100690397, -), CAediting_653774(100690417, -), CAediting_653775(100690422, -), CAediting_653776(100692138, -), CAediting_653777(100692148, -), CAediting_653778(100694790, -), CAediting_653779(100694815, -), CAediting_653780(100694824, -), CAediting_653781(100694876, -), CAediting_653782(100694879, -), CAediting_653783(100694983, -), CAediting_653784(100694986, -), CAediting_653785(100696199, -), CAediting_653786(100696201, -), CAediting_653787(100696332, -), CAediting_653788(100696986, -), CAediting_653789(100697049, -), CAediting_653790(100697357, -), CAediting_653791(100697568, -), CAediting_653792(100698352, -), CAediting_653793(100698404, -), CAediting_653794(100698411, -), CAediting_653795(100698948, -), CAediting_653796(100703791, -), CAediting_653797(100703797, -), CAediting_653798(100703798, -), CAediting_653799(100703805, -), CAediting_653800(100703806, -), CAediting_653801(100703838, -), CAediting_653802(100703884, -), CAediting_653803(100703893, -), CAediting_653804(100703915, -), CAediting_653805(100703943, -), CAediting_653806(100703969, -), CAediting_653807(100703973, -), CAediting_653808(100703979, -), CAediting_653809(100703993, -), CAediting_653810(100703998, -), CAediting_653811(100704028, -), CAediting_653812(100704051, -), CAediting_653813(100705871, -), CAediting_653814(100705917, -), CAediting_653815(100705976, -), CAediting_653816(100705985, -), CAediting_653817(100706008, -), CAediting_653818(100706024, -), CAediting_653819(100706082, -), CAediting_653820(100706101, -), CAediting_653821(100706416, -), CAediting_653822(100706419, -), CAediting_653823(100706432, -), CAediting_653824(100706439, -), CAediting_653825(100708334, -), CAediting_653826(100708344, -), CAediting_653827(100708347, -), CAediting_653828(100708412, -), CAediting_653829(100708450, -), CAediting_653830(100708624, -), CAediting_653831(100708633, -), CAediting_653832(100708738, -), CAediting_653833(100708764, -), CAediting_653834(100708767, -), CAediting_653835(100708821, -), CAediting_653836(100708852, -), CAediting_653837(100710770, -), CAediting_653838(100710795, -), CAediting_653839(100710849, -), CAediting_653840(100710878, -), CAediting_653841(100711113, -), CAediting_653842(100711116, -), CAediting_653843(100713499, -), CAediting_653844(100713528, -), CAediting_653845(100713568, -), CAediting_653846(100713569, -), CAediting_653847(100713592, -), CAediting_653848(100713598, -), CAediting_653849(100713601, -), CAediting_653850(100713605, -), CAediting_653851(100713610, -), CAediting_653852(100713628, -), CAediting_653853(100713631, -), CAediting_653854(100713648, -), CAediting_653855(100713652, -), CAediting_653856(100713656, -), CAediting_653857(100713659, -), CAediting_653858(100713666, -), CAediting_653859(100713667, -), CAediting_653860(100713670, -), CAediting_653861(100713683, -), CAediting_653862(100713684, -), CAediting_653863(100713687, -), CAediting_653864(100713691, -), CAediting_653865(100713704, -), CAediting_653866(100713713, -), CAediting_653867(100713719, -), CAediting_653868(100713720, -), CAediting_653869(100713736, -), CAediting_653870(100713737, -), CAediting_653871(100713759, -), CAediting_653872(100713773, -), CAediting_653873(100713776, -), CAediting_653874(100713778, -), CAediting_653875(100713781, -), CAediting_653876(100714474, -), CAediting_653877(100714486, -), CAediting_653878(100714487, -), CAediting_653879(100714513, -), CAediting_653880(100714514, -), CAediting_653881(100714551, -), CAediting_653882(100714568, -), CAediting_653883(100714583, -), CAediting_653884(100714587, -), CAediting_653885(100714593, -), CAediting_653886(100714607, -), CAediting_653887(100714609, -), CAediting_653888(100714619, -), CAediting_653889(100714643, -), CAediting_653890(100714647, -), CAediting_653891(100714667, -), CAediting_653892(100714687, -), CAediting_653893(100714707, -), CAediting_653894(100716147, -), CAediting_653895(100716159, -), CAediting_653896(100716160, -), CAediting_653897(100716174, -), CAediting_653898(100716186, -), CAediting_653899(100716205, -), CAediting_653900(100716206, -), CAediting_653901(100716212, -), CAediting_653902(100716230, -), CAediting_653903(100716234, -), CAediting_653904(100716236, -), CAediting_653905(100716239, -), CAediting_653906(100716252, -), CAediting_653907(100716253, -), CAediting_653908(100716257, -), CAediting_653909(100716261, -), CAediting_653910(100716269, -), CAediting_653911(100716271, -), CAediting_653912(100716277, -), CAediting_653913(100716289, -), CAediting_653914(100716292, -), CAediting_653915(100716293, -), CAediting_653916(100716301, -), CAediting_653917(100716314, -), CAediting_653918(100716315, -), CAediting_653919(100716318, -), CAediting_653920(100716344, -), CAediting_653921(100716373, -), CAediting_653922(100716719, -), CAediting_653923(100716801, -), CAediting_653924(100717078, -), CAediting_653925(100717100, -), CAediting_653926(100717108, -), CAediting_653927(100717109, -), CAediting_653928(100717113, -), CAediting_653929(100717117, -), CAediting_653930(100717148, -), CAediting_653931(100717149, -), CAediting_653932(100717175, -), CAediting_653933(100717178, -), CAediting_653934(100717179, -), CAediting_653935(100717185, -), CAediting_653936(100717211, -), CAediting_653937(100717215, -), CAediting_653938(100717221, -),

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RNA editing positional annotations for PABPC1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_653762	chr8_100687930_-	intronic
CAediting_653763	chr8_100689452_-	intronic
CAediting_653764	chr8_100689501_-	intronic
CAediting_653765	chr8_100689502_-	intronic
CAediting_653766	chr8_100689521_-	intronic
CAediting_653767	chr8_100689525_-	intronic
CAediting_653768	chr8_100689566_-	intronic
CAediting_653769	chr8_100689567_-	intronic
CAediting_653770	chr8_100689607_-	intronic
CAediting_653771	chr8_100689671_-	intronic
CAediting_653772	chr8_100689714_-	intronic
CAediting_653773	chr8_100690397_-	intronic
CAediting_653774	chr8_100690417_-	intronic
CAediting_653775	chr8_100690422_-	intronic
CAediting_653776	chr8_100692138_-	intronic
CAediting_653777	chr8_100692148_-	intronic
CAediting_653778	chr8_100694790_-	intronic
CAediting_653779	chr8_100694815_-	intronic
CAediting_653780	chr8_100694824_-	intronic
CAediting_653781	chr8_100694876_-	intronic
CAediting_653782	chr8_100694879_-	intronic
CAediting_653783	chr8_100694983_-	intronic
CAediting_653784	chr8_100694986_-	intronic
CAediting_653785	chr8_100696199_-	intronic
CAediting_653786	chr8_100696201_-	intronic
CAediting_653787	chr8_100696332_-	intronic
CAediting_653788	chr8_100696986_-	intronic
CAediting_653789	chr8_100697049_-	intronic
CAediting_653790	chr8_100697357_-	intronic
CAediting_653791	chr8_100697568_-	intronic
CAediting_653792	chr8_100698352_-	intronic
CAediting_653793	chr8_100698404_-	intronic
CAediting_653794	chr8_100698411_-	intronic
CAediting_653795	chr8_100698948_-	intronic
CAediting_653796	chr8_100703791_-	intronic
CAediting_653797	chr8_100703797_-	intronic
CAediting_653798	chr8_100703798_-	intronic
CAediting_653799	chr8_100703805_-	intronic
CAediting_653800	chr8_100703806_-	intronic
CAediting_653801	chr8_100703838_-	intronic
CAediting_653802	chr8_100703884_-	intronic
CAediting_653803	chr8_100703893_-	intronic
CAediting_653804	chr8_100703915_-	intronic
CAediting_653805	chr8_100703943_-	intronic
CAediting_653806	chr8_100703969_-	intronic
CAediting_653807	chr8_100703973_-	intronic
CAediting_653808	chr8_100703979_-	intronic
CAediting_653809	chr8_100703993_-	intronic
CAediting_653810	chr8_100703998_-	intronic
CAediting_653811	chr8_100704028_-	intronic
CAediting_653812	chr8_100704051_-	intronic
CAediting_653813	chr8_100705871_-	ncRNA_intronic
CAediting_653814	chr8_100705917_-	ncRNA_intronic
CAediting_653815	chr8_100705976_-	ncRNA_intronic
CAediting_653816	chr8_100705985_-	ncRNA_intronic
CAediting_653817	chr8_100706008_-	ncRNA_intronic
CAediting_653818	chr8_100706024_-	ncRNA_intronic
CAediting_653819	chr8_100706082_-	ncRNA_intronic
CAediting_653820	chr8_100706101_-	ncRNA_intronic
CAediting_653821	chr8_100706416_-	ncRNA_intronic
CAediting_653822	chr8_100706419_-	ncRNA_intronic
CAediting_653823	chr8_100706432_-	ncRNA_intronic
CAediting_653824	chr8_100706439_-	ncRNA_intronic
CAediting_653825	chr8_100708334_-	ncRNA_intronic
CAediting_653826	chr8_100708344_-	ncRNA_intronic
CAediting_653827	chr8_100708347_-	ncRNA_intronic
CAediting_653828	chr8_100708412_-	ncRNA_intronic
CAediting_653829	chr8_100708450_-	ncRNA_intronic
CAediting_653830	chr8_100708624_-	ncRNA_intronic
CAediting_653831	chr8_100708633_-	ncRNA_intronic
CAediting_653832	chr8_100708738_-	ncRNA_intronic
CAediting_653833	chr8_100708764_-	ncRNA_intronic
CAediting_653834	chr8_100708767_-	ncRNA_intronic
CAediting_653835	chr8_100708821_-	ncRNA_intronic
CAediting_653836	chr8_100708852_-	ncRNA_intronic
CAediting_653837	chr8_100710770_-	ncRNA_intronic
CAediting_653838	chr8_100710795_-	ncRNA_intronic
CAediting_653839	chr8_100710849_-	ncRNA_intronic
CAediting_653840	chr8_100710878_-	ncRNA_intronic
CAediting_653841	chr8_100711113_-	ncRNA_intronic
CAediting_653842	chr8_100711116_-	ncRNA_intronic
CAediting_653843	chr8_100713499_-	ncRNA_intronic
CAediting_653844	chr8_100713528_-	ncRNA_intronic
CAediting_653845	chr8_100713568_-	ncRNA_intronic
CAediting_653846	chr8_100713569_-	ncRNA_intronic
CAediting_653847	chr8_100713592_-	ncRNA_intronic
CAediting_653848	chr8_100713598_-	ncRNA_intronic
CAediting_653849	chr8_100713601_-	ncRNA_intronic
CAediting_653850	chr8_100713605_-	ncRNA_intronic
CAediting_653851	chr8_100713610_-	ncRNA_intronic
CAediting_653852	chr8_100713628_-	ncRNA_intronic
CAediting_653853	chr8_100713631_-	ncRNA_intronic
CAediting_653854	chr8_100713648_-	ncRNA_intronic
CAediting_653855	chr8_100713652_-	ncRNA_intronic
CAediting_653856	chr8_100713656_-	ncRNA_intronic
CAediting_653857	chr8_100713659_-	ncRNA_intronic
CAediting_653858	chr8_100713666_-	ncRNA_intronic
CAediting_653859	chr8_100713667_-	ncRNA_intronic
CAediting_653860	chr8_100713670_-	ncRNA_intronic
CAediting_653861	chr8_100713683_-	ncRNA_intronic
CAediting_653862	chr8_100713684_-	ncRNA_intronic
CAediting_653863	chr8_100713687_-	ncRNA_intronic
CAediting_653864	chr8_100713691_-	ncRNA_intronic
CAediting_653865	chr8_100713704_-	ncRNA_intronic
CAediting_653866	chr8_100713713_-	ncRNA_intronic
CAediting_653867	chr8_100713719_-	ncRNA_intronic
CAediting_653868	chr8_100713720_-	ncRNA_intronic
CAediting_653869	chr8_100713736_-	ncRNA_intronic
CAediting_653870	chr8_100713737_-	ncRNA_intronic
CAediting_653871	chr8_100713759_-	ncRNA_intronic
CAediting_653872	chr8_100713773_-	ncRNA_intronic
CAediting_653873	chr8_100713776_-	ncRNA_intronic
CAediting_653874	chr8_100713778_-	ncRNA_intronic
CAediting_653875	chr8_100713781_-	ncRNA_intronic
CAediting_653876	chr8_100714474_-	ncRNA_intronic
CAediting_653877	chr8_100714486_-	ncRNA_intronic
CAediting_653878	chr8_100714487_-	ncRNA_intronic
CAediting_653879	chr8_100714513_-	ncRNA_intronic
CAediting_653880	chr8_100714514_-	ncRNA_intronic
CAediting_653881	chr8_100714551_-	ncRNA_intronic
CAediting_653882	chr8_100714568_-	ncRNA_intronic
CAediting_653883	chr8_100714583_-	ncRNA_intronic
CAediting_653884	chr8_100714587_-	ncRNA_intronic
CAediting_653885	chr8_100714593_-	ncRNA_intronic
CAediting_653886	chr8_100714607_-	ncRNA_intronic
CAediting_653887	chr8_100714609_-	ncRNA_intronic
CAediting_653888	chr8_100714619_-	ncRNA_intronic
CAediting_653889	chr8_100714643_-	ncRNA_intronic
CAediting_653890	chr8_100714647_-	ncRNA_intronic
CAediting_653891	chr8_100714667_-	ncRNA_intronic
CAediting_653892	chr8_100714687_-	ncRNA_intronic
CAediting_653893	chr8_100714707_-	ncRNA_intronic
CAediting_653894	chr8_100716147_-	ncRNA_intronic
CAediting_653895	chr8_100716159_-	ncRNA_intronic
CAediting_653896	chr8_100716160_-	ncRNA_intronic
CAediting_653897	chr8_100716174_-	ncRNA_intronic
CAediting_653898	chr8_100716186_-	ncRNA_intronic
CAediting_653899	chr8_100716205_-	ncRNA_intronic
CAediting_653900	chr8_100716206_-	ncRNA_intronic
CAediting_653901	chr8_100716212_-	ncRNA_intronic
CAediting_653902	chr8_100716230_-	ncRNA_intronic
CAediting_653903	chr8_100716234_-	ncRNA_intronic
CAediting_653904	chr8_100716236_-	ncRNA_intronic
CAediting_653905	chr8_100716239_-	ncRNA_intronic
CAediting_653906	chr8_100716252_-	ncRNA_intronic
CAediting_653907	chr8_100716253_-	ncRNA_intronic
CAediting_653908	chr8_100716257_-	ncRNA_intronic
CAediting_653909	chr8_100716261_-	ncRNA_intronic
CAediting_653910	chr8_100716269_-	ncRNA_intronic
CAediting_653911	chr8_100716271_-	ncRNA_intronic
CAediting_653912	chr8_100716277_-	ncRNA_intronic
CAediting_653913	chr8_100716289_-	ncRNA_intronic
CAediting_653914	chr8_100716292_-	ncRNA_intronic
CAediting_653915	chr8_100716293_-	ncRNA_intronic
CAediting_653916	chr8_100716301_-	ncRNA_intronic
CAediting_653917	chr8_100716314_-	ncRNA_intronic
CAediting_653918	chr8_100716315_-	ncRNA_intronic
CAediting_653919	chr8_100716318_-	ncRNA_intronic
CAediting_653920	chr8_100716344_-	ncRNA_intronic
CAediting_653921	chr8_100716373_-	ncRNA_intronic
CAediting_653922	chr8_100716719_-	ncRNA_intronic
CAediting_653923	chr8_100716801_-	ncRNA_intronic
CAediting_653924	chr8_100717078_-	ncRNA_intronic
CAediting_653925	chr8_100717100_-	ncRNA_intronic
CAediting_653926	chr8_100717108_-	ncRNA_intronic
CAediting_653927	chr8_100717109_-	ncRNA_intronic
CAediting_653928	chr8_100717113_-	ncRNA_intronic
CAediting_653929	chr8_100717117_-	ncRNA_intronic
CAediting_653930	chr8_100717148_-	ncRNA_intronic
CAediting_653931	chr8_100717149_-	ncRNA_intronic
CAediting_653932	chr8_100717175_-	ncRNA_intronic
CAediting_653933	chr8_100717178_-	ncRNA_intronic
CAediting_653934	chr8_100717179_-	ncRNA_intronic
CAediting_653935	chr8_100717185_-	ncRNA_intronic
CAediting_653936	chr8_100717211_-	ncRNA_intronic
CAediting_653937	chr8_100717215_-	ncRNA_intronic
CAediting_653938	chr8_100717221_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_653762	chr8_100687930_-	SINE	Alu	AluSz
CAediting_653763	chr8_100689452_-	SINE	Alu	AluSx1
CAediting_653764	chr8_100689501_-	SINE	Alu	AluSx1
CAediting_653765	chr8_100689502_-	SINE	Alu	AluSx1
CAediting_653766	chr8_100689521_-	SINE	Alu	AluSx1
CAediting_653767	chr8_100689525_-	SINE	Alu	AluSx1
CAediting_653768	chr8_100689566_-	SINE	Alu	AluSx1
CAediting_653769	chr8_100689567_-	SINE	Alu	AluSx1
CAediting_653770	chr8_100689607_-	SINE	Alu	AluSx1
CAediting_653771	chr8_100689671_-	SINE	Alu	AluSx1
CAediting_653772	chr8_100689714_-	SINE	Alu	AluSx1
CAediting_653773	chr8_100690397_-	SINE	Alu	AluSz
CAediting_653774	chr8_100690417_-	SINE	Alu	AluSz
CAediting_653775	chr8_100690422_-	SINE	Alu	AluSz
CAediting_653776	chr8_100692138_-	SINE	Alu	AluJb
CAediting_653777	chr8_100692148_-	SINE	Alu	AluJb
CAediting_653778	chr8_100694790_-	SINE	Alu	AluSq2
CAediting_653779	chr8_100694815_-	SINE	Alu	AluSq2
CAediting_653780	chr8_100694824_-	SINE	Alu	AluSq2
CAediting_653781	chr8_100694876_-	SINE	Alu	AluSq2
CAediting_653782	chr8_100694879_-	SINE	Alu	AluSq2
CAediting_653783	chr8_100694983_-	SINE	Alu	AluSq2
CAediting_653784	chr8_100694986_-	SINE	Alu	AluSq2
CAediting_653785	chr8_100696199_-	SINE	Alu	AluSz
CAediting_653786	chr8_100696201_-	SINE	Alu	AluSz
CAediting_653787	chr8_100696332_-	SINE	Alu	AluSz
CAediting_653788	chr8_100696986_-	SINE	Alu	AluSx1
CAediting_653789	chr8_100697049_-	SINE	Alu	AluSx1
CAediting_653790	chr8_100697357_-	SINE	Alu	AluSp
CAediting_653791	chr8_100697568_-	SINE	Alu	AluSp
CAediting_653792	chr8_100698352_-	SINE	Alu	AluSx
CAediting_653793	chr8_100698404_-	SINE	Alu	AluSx
CAediting_653794	chr8_100698411_-	SINE	Alu	AluSx
CAediting_653795	chr8_100698948_-	SINE	Alu	AluJr
CAediting_653796	chr8_100703791_-	SINE	Alu	AluSx1
CAediting_653797	chr8_100703797_-	SINE	Alu	AluSx1
CAediting_653798	chr8_100703798_-	SINE	Alu	AluSx1
CAediting_653799	chr8_100703805_-	SINE	Alu	AluSx1
CAediting_653800	chr8_100703806_-	SINE	Alu	AluSx1
CAediting_653801	chr8_100703838_-	SINE	Alu	AluSx1
CAediting_653802	chr8_100703884_-	SINE	Alu	AluSx1
CAediting_653803	chr8_100703893_-	SINE	Alu	AluSx1
CAediting_653804	chr8_100703915_-	SINE	Alu	AluSx1
CAediting_653805	chr8_100703943_-	SINE	Alu	AluSx1
CAediting_653806	chr8_100703969_-	SINE	Alu	AluSx1
CAediting_653807	chr8_100703973_-	SINE	Alu	AluSx1
CAediting_653808	chr8_100703979_-	SINE	Alu	AluSx1
CAediting_653809	chr8_100703993_-	SINE	Alu	AluSx1
CAediting_653810	chr8_100703998_-	SINE	Alu	AluSx1
CAediting_653811	chr8_100704028_-	SINE	Alu	AluSx1
CAediting_653812	chr8_100704051_-	SINE	Alu	AluSx1
CAediting_653813	chr8_100705871_-	SINE	Alu	AluSz
CAediting_653814	chr8_100705917_-	SINE	Alu	AluSz
CAediting_653815	chr8_100705976_-	SINE	Alu	AluSz
CAediting_653816	chr8_100705985_-	SINE	Alu	AluSz
CAediting_653817	chr8_100706008_-	SINE	Alu	AluSz
CAediting_653818	chr8_100706024_-	SINE	Alu	AluSz
CAediting_653819	chr8_100706082_-	SINE	Alu	AluSz
CAediting_653820	chr8_100706101_-	SINE	Alu	AluSz
CAediting_653821	chr8_100706416_-	SINE	Alu	AluJo
CAediting_653822	chr8_100706419_-	SINE	Alu	AluJo
CAediting_653823	chr8_100706432_-	SINE	Alu	AluJo
CAediting_653824	chr8_100706439_-	SINE	Alu	AluJo
CAediting_653825	chr8_100708334_-	SINE	Alu	AluSx3
CAediting_653826	chr8_100708344_-	SINE	Alu	AluSx3
CAediting_653827	chr8_100708347_-	SINE	Alu	AluSx3
CAediting_653828	chr8_100708412_-	SINE	Alu	AluSx3
CAediting_653829	chr8_100708450_-	SINE	Alu	AluSx3
CAediting_653830	chr8_100708624_-	SINE	Alu	AluSx1
CAediting_653831	chr8_100708633_-	SINE	Alu	AluSx1
CAediting_653832	chr8_100708738_-	SINE	Alu	AluSx1
CAediting_653833	chr8_100708764_-	SINE	Alu	AluSx1
CAediting_653834	chr8_100708767_-	SINE	Alu	AluSx1
CAediting_653835	chr8_100708821_-	SINE	Alu	AluSx1
CAediting_653836	chr8_100708852_-	SINE	Alu	AluSx1
CAediting_653837	chr8_100710770_-	SINE	Alu	AluSx1
CAediting_653838	chr8_100710795_-	SINE	Alu	AluSx1
CAediting_653839	chr8_100710849_-	SINE	Alu	AluSx1
CAediting_653840	chr8_100710878_-	SINE	Alu	AluSx1
CAediting_653841	chr8_100711113_-	SINE	Alu	AluSx
CAediting_653842	chr8_100711116_-	SINE	Alu	AluSx
CAediting_653843	chr8_100713499_-	SINE	Alu	AluJr4
CAediting_653844	chr8_100713528_-	SINE	Alu	AluJr4
CAediting_653845	chr8_100713568_-	SINE	Alu	AluJr4
CAediting_653846	chr8_100713569_-	SINE	Alu	AluJr4
CAediting_653847	chr8_100713592_-	SINE	Alu	AluJr4
CAediting_653848	chr8_100713598_-	SINE	Alu	AluJr4
CAediting_653849	chr8_100713601_-	SINE	Alu	AluJr4
CAediting_653850	chr8_100713605_-	SINE	Alu	AluJr4
CAediting_653851	chr8_100713610_-	SINE	Alu	AluJr4
CAediting_653852	chr8_100713628_-	SINE	Alu	AluJr4
CAediting_653853	chr8_100713631_-	SINE	Alu	AluJr4
CAediting_653854	chr8_100713648_-	SINE	Alu	AluJr4
CAediting_653855	chr8_100713652_-	SINE	Alu	AluJr4
CAediting_653856	chr8_100713656_-	SINE	Alu	AluJr4
CAediting_653857	chr8_100713659_-	SINE	Alu	AluJr4
CAediting_653858	chr8_100713666_-	SINE	Alu	AluJr4
CAediting_653859	chr8_100713667_-	SINE	Alu	AluJr4
CAediting_653860	chr8_100713670_-	SINE	Alu	AluJr4
CAediting_653861	chr8_100713683_-	SINE	Alu	AluJr4
CAediting_653862	chr8_100713684_-	SINE	Alu	AluJr4
CAediting_653863	chr8_100713687_-	SINE	Alu	AluJr4
CAediting_653864	chr8_100713691_-	SINE	Alu	AluJr4
CAediting_653865	chr8_100713704_-	SINE	Alu	AluJr4
CAediting_653866	chr8_100713713_-	SINE	Alu	AluJr4
CAediting_653867	chr8_100713719_-	SINE	Alu	AluJr4
CAediting_653868	chr8_100713720_-	SINE	Alu	AluJr4
CAediting_653869	chr8_100713736_-	SINE	Alu	AluJr4
CAediting_653870	chr8_100713737_-	SINE	Alu	AluJr4
CAediting_653871	chr8_100713759_-	SINE	Alu	AluJr4
CAediting_653872	chr8_100713773_-	SINE	Alu	AluJr4
CAediting_653873	chr8_100713776_-	SINE	Alu	AluJr4
CAediting_653874	chr8_100713778_-	SINE	Alu	AluJr4
CAediting_653876	chr8_100714474_-	SINE	Alu	AluSz
CAediting_653877	chr8_100714486_-	SINE	Alu	AluSz
CAediting_653878	chr8_100714487_-	SINE	Alu	AluSz
CAediting_653879	chr8_100714513_-	SINE	Alu	AluSz
CAediting_653880	chr8_100714514_-	SINE	Alu	AluSz
CAediting_653881	chr8_100714551_-	SINE	Alu	AluSz
CAediting_653882	chr8_100714568_-	SINE	Alu	AluSz
CAediting_653883	chr8_100714583_-	SINE	Alu	AluSz
CAediting_653884	chr8_100714587_-	SINE	Alu	AluSz
CAediting_653885	chr8_100714593_-	SINE	Alu	AluSz
CAediting_653886	chr8_100714607_-	SINE	Alu	AluSz
CAediting_653887	chr8_100714609_-	SINE	Alu	AluSz
CAediting_653888	chr8_100714619_-	SINE	Alu	AluSz
CAediting_653889	chr8_100714643_-	SINE	Alu	AluSz
CAediting_653890	chr8_100714647_-	SINE	Alu	AluSz
CAediting_653891	chr8_100714667_-	SINE	Alu	AluSz
CAediting_653892	chr8_100714687_-	SINE	Alu	AluSz
CAediting_653893	chr8_100714707_-	SINE	Alu	AluSz
CAediting_653894	chr8_100716147_-	SINE	Alu	AluSz6
CAediting_653895	chr8_100716159_-	SINE	Alu	AluSz6
CAediting_653896	chr8_100716160_-	SINE	Alu	AluSz6
CAediting_653897	chr8_100716174_-	SINE	Alu	AluSz6
CAediting_653898	chr8_100716186_-	SINE	Alu	AluSz6
CAediting_653899	chr8_100716205_-	SINE	Alu	AluSz6
CAediting_653900	chr8_100716206_-	SINE	Alu	AluSz6
CAediting_653901	chr8_100716212_-	SINE	Alu	AluSz6
CAediting_653902	chr8_100716230_-	SINE	Alu	AluSz6
CAediting_653903	chr8_100716234_-	SINE	Alu	AluSz6
CAediting_653904	chr8_100716236_-	SINE	Alu	AluSz6
CAediting_653905	chr8_100716239_-	SINE	Alu	AluSz6
CAediting_653906	chr8_100716252_-	SINE	Alu	AluSz6
CAediting_653907	chr8_100716253_-	SINE	Alu	AluSz6
CAediting_653908	chr8_100716257_-	SINE	Alu	AluSz6
CAediting_653909	chr8_100716261_-	SINE	Alu	AluSz6
CAediting_653910	chr8_100716269_-	SINE	Alu	AluSz6
CAediting_653911	chr8_100716271_-	SINE	Alu	AluSz6
CAediting_653912	chr8_100716277_-	SINE	Alu	AluSz6
CAediting_653913	chr8_100716289_-	SINE	Alu	AluSz6
CAediting_653914	chr8_100716292_-	SINE	Alu	AluSz6
CAediting_653915	chr8_100716293_-	SINE	Alu	AluSz6
CAediting_653916	chr8_100716301_-	SINE	Alu	AluSz6
CAediting_653917	chr8_100716314_-	SINE	Alu	AluSz6
CAediting_653918	chr8_100716315_-	SINE	Alu	AluSz6
CAediting_653919	chr8_100716318_-	SINE	Alu	AluSz6
CAediting_653920	chr8_100716344_-	SINE	Alu	AluSz6
CAediting_653921	chr8_100716373_-	SINE	Alu	AluSz6
CAediting_653922	chr8_100716719_-	SINE	Alu	FAM
CAediting_653923	chr8_100716801_-	SINE	Alu	FAM
CAediting_653924	chr8_100717078_-	SINE	Alu	AluSp
CAediting_653925	chr8_100717100_-	SINE	Alu	AluSp
CAediting_653926	chr8_100717108_-	SINE	Alu	AluSp
CAediting_653927	chr8_100717109_-	SINE	Alu	AluSp
CAediting_653928	chr8_100717113_-	SINE	Alu	AluSp
CAediting_653929	chr8_100717117_-	SINE	Alu	AluSp
CAediting_653930	chr8_100717148_-	SINE	Alu	AluSp
CAediting_653931	chr8_100717149_-	SINE	Alu	AluSp
CAediting_653932	chr8_100717175_-	SINE	Alu	AluSp
CAediting_653933	chr8_100717178_-	SINE	Alu	AluSp
CAediting_653934	chr8_100717179_-	SINE	Alu	AluSp
CAediting_653935	chr8_100717185_-	SINE	Alu	AluSp
CAediting_653936	chr8_100717211_-	SINE	Alu	AluSp
CAediting_653937	chr8_100717215_-	SINE	Alu	AluSp
CAediting_653938	chr8_100717221_-	SINE	Alu	AluSp

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RNA A-to-I editing events in the alternative splicing sites for PABPC1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_653807	chr8_100703973_-	100703971:100703979	5SS	0+4i	AGGTTCAAG	-12.66	AGGTTCGAG	-17.82
IR	CAediting_653807	chr8_100703973_-	100703971:100703979	5SS	0+4i	AGGTTCAAG	-12.66	AGGTTCGAG	-17.82
ES	CAediting_653808	chr8_100703979_-	100703971:100703979	5SS	3+0i	AGGTTCAAG	-12.66	GGGTTCAAG	-15.39
IR	CAediting_653808	chr8_100703979_-	100703971:100703979	5SS	3+0i	AGGTTCAAG	-12.66	GGGTTCAAG	-15.39
ES	CAediting_653812	chr8_100704051_-	100704049:100704071	3SS	1+0i	TTTTTTTTTTTTTTTTTGAGATG	4.74	TTTTTTTTTTTTTTTTTGAGGTG	6.4

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000070756.12.PABPC1.

Correlation between RNA A-to-I editing and PSI for ENSG00000070756.12.PABPC1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PABPC1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BRCA.CAediting_653872.ENSG00000070756.PABPC1.png
Soverview

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Protein coding region RNA A-to-I editings for PABPC1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for PABPC1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000070756.12	ENST00000519622	hsa-miR-624-3p	100709516	100709523	8mer-1a	100709516	100709534	147	-13.6
CAediting_1160181	chr17_7017644_-	ENSG00000070756.12	ENST00000518293	hsa-miR-195-3p	100685944	100685949	6mer	100685943	100685966	143	-14.01
CAediting_1160181	chr17_7017644_-	ENSG00000070756.12	ENST00000520868	hsa-miR-195-3p	100703268	100703274	7mer-m8	100703267	100703288	140	-7.73
CAediting_1160181	chr17_7017644_-	ENSG00000070756.12	ENST00000318607	hsa-miR-195-3p	100703268	100703274	7mer-m8	100703267	100703288	140	-7.73
CAediting_1160181	chr17_7017644_-	ENSG00000070756.12	ENST00000519004	hsa-miR-195-3p	100703268	100703274	7mer-m8	100703267	100703288	140	-7.73
CAediting_1160181	chr17_7017644_-	ENSG00000070756.12	ENST00000522387	hsa-miR-195-3p	100703268	100703274	7mer-m8	100703267	100703288	140	-7.73
CAediting_1160181	chr17_7017644_-	ENSG00000070756.12	ENST00000523636	hsa-miR-195-3p	100703268	100703274	7mer-m8	100703267	100703288	140	-7.73

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PABPC1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for PABPC1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_653872	chr8_100713773_-	.	.	0.0227073058979003	0.251402745747841	.	.
BRCA	CAediting_653872	chr8_100713773_-	0.0176027233419579	0.213747239437504	.	.	.	.
STAD	CAediting_653904	chr8_100716236_-	0.0337658661390503	0.300833217607268	.	.	.	.

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Relation with cancer stages for PABPC1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_653867	chr8_100713719_-	0.0368534107576827	-0.261517662892027
BLCA	pathologic_stage	CAediting_653872	chr8_100713773_-	0.00431079258186355	0.315896343035329
LUSC	pathologic_stage	CAediting_653867	chr8_100713719_-	0.000718340395471426	0.331142891776394

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Relation with survival for PABPC1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
ESCA	CAediting_653918	chr8_100716315_-	0.0313774591320173	0.00887325	427.988

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RelatedDrugs for PABPC1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for PABPC1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
PABPC1	C0005684	Malignant neoplasm of urinary bladder	1	CTD_human
PABPC1	C0005695	Bladder Neoplasm	1	CTD_human
PABPC1	C0006142	Malignant neoplasm of breast	1	CTD_human
PABPC1	C0007138	Carcinoma, Transitional Cell	1	CTD_human
PABPC1	C0678222	Breast Carcinoma	1	CTD_human
PABPC1	C1257931	Mammary Neoplasms, Human	1	CTD_human
PABPC1	C1458155	Mammary Neoplasms	1	CTD_human
PABPC1	C4704874	Mammary Carcinoma, Human	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene