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Editing gene: HBP1 (CAeditome ID:26959)

Gene summary for HBP1

Gene summary

Gene information	Gene symbol	HBP1
	Gene ID	26959
	Gene name	HMG-box transcription factor 1
	Synonyms	-
	Cytomap	7q22.3
	Type of gene	protein-coding
	Description	HMG box-containing protein 1high mobility group box transcription factor 1
	Modification date	20210518
	UniProtAcc	O60381
	Context	- 34013373(UHRF1 regulates the transcriptional repressor HBP1 through MIF in T acute lymphoblastic leukemia)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
HBP1	GO:0005654	HMG box-containing protein 1	0000052
HBP1	GO:0016607	HMG box-containing protein 1	0000052

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RNA A-to-I events for HBP1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000105856.12

RNA A-to-I editing events in Cancer.

CAediting_593651(107171209, +), CAediting_593652(107171292, +), CAediting_593653(107171575, +), CAediting_593654(107171603, +), CAediting_593655(107171623, +), CAediting_593656(107171662, +), CAediting_593657(107171663, +), CAediting_593658(107171698, +), CAediting_593659(107171699, +), CAediting_593660(107171701, +), CAediting_593661(107171704, +), CAediting_593662(107171713, +), CAediting_593663(107171731, +), CAediting_593664(107171739, +), CAediting_593665(107171745, +), CAediting_593666(107171756, +), CAediting_593667(107171762, +), CAediting_593668(107171766, +), CAediting_593669(107171767, +), CAediting_593670(107171780, +), CAediting_593671(107171781, +), CAediting_593672(107171792, +), CAediting_593673(107171845, +), CAediting_593674(107172395, +), CAediting_593675(107172396, +), CAediting_593676(107172400, +), CAediting_593677(107172419, +), CAediting_593678(107172422, +), CAediting_593679(107172423, +), CAediting_593680(107172429, +), CAediting_593681(107172432, +), CAediting_593682(107172776, +), CAediting_593683(107172827, +), CAediting_593684(107176106, +), CAediting_593685(107176209, +), CAediting_593686(107193737, +), CAediting_593687(107195072, +), CAediting_593688(107195163, +), CAediting_593689(107195167, +), CAediting_593690(107195205, +), CAediting_593691(107195242, +), CAediting_593692(107196313, +), CAediting_593693(107196398, +), CAediting_593694(107196418, +), CAediting_593695(107196453, +), CAediting_593696(107196529, +), CAediting_593697(107196530, +), CAediting_593698(107196708, +), CAediting_593699(107196710, +), CAediting_593700(107196723, +), CAediting_593701(107196784, +), CAediting_593702(107196797, +), CAediting_593703(107196854, +), CAediting_593704(107196867, +), CAediting_593705(107197579, +), CAediting_593706(107198439, +), CAediting_593707(107199185, +), CAediting_593708(107199225, +), CAediting_593709(107199238, +), CAediting_593710(107200035, +), CAediting_593711(107200166, +), CAediting_593712(107200167, +), CAediting_593713(107200561, +), CAediting_593714(107200562, +), CAediting_593715(107200828, +), CAediting_593716(107201421, +), CAediting_593717(107201425, +), CAediting_593718(107201430, +), CAediting_593719(107201495, +), CAediting_593720(107201499, +),

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RNA editing positional annotations for HBP1 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_593711	chr7_107200166_+	nonsynonymous SNV	ENST00000222574.7	c.A1392G	p.I464M	D	D	D
CAediting_593711	chr7_107200166_+	nonsynonymous SNV	ENST00000468410.4	c.A1392G	p.I464M	D	D	D
CAediting_593711	chr7_107200166_+	nonsynonymous SNV	ENST00000485846.4	c.A1392G	p.I464M	D	D	D
CAediting_593712	chr7_107200167_+	nonsynonymous SNV	ENST00000222574.7	c.A1393G	p.S465G	D	D	D
CAediting_593712	chr7_107200167_+	nonsynonymous SNV	ENST00000468410.4	c.A1393G	p.S465G	D	D	D
CAediting_593712	chr7_107200167_+	nonsynonymous SNV	ENST00000485846.4	c.A1393G	p.S465G	D	D	D
CAediting_593716	chr7_107201421_+	nonsynonymous SNV	ENST00000222574.7	c.A1535G	p.Q512R	D	B	N
CAediting_593716	chr7_107201421_+	nonsynonymous SNV	ENST00000468410.4	c.A1535G	p.Q512R	D	B	N
CAediting_593716	chr7_107201421_+	nonsynonymous SNV	ENST00000485846.4	c.A1535G	p.Q512R	D	B	N

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_593651	chr7_107171209_+	ncRNA_intronic
CAediting_593652	chr7_107171292_+	ncRNA_intronic
CAediting_593653	chr7_107171575_+	ncRNA_intronic
CAediting_593654	chr7_107171603_+	ncRNA_intronic
CAediting_593655	chr7_107171623_+	ncRNA_intronic
CAediting_593656	chr7_107171662_+	ncRNA_intronic
CAediting_593657	chr7_107171663_+	ncRNA_intronic
CAediting_593658	chr7_107171698_+	ncRNA_intronic
CAediting_593659	chr7_107171699_+	ncRNA_intronic
CAediting_593660	chr7_107171701_+	ncRNA_intronic
CAediting_593661	chr7_107171704_+	ncRNA_intronic
CAediting_593662	chr7_107171713_+	ncRNA_intronic
CAediting_593663	chr7_107171731_+	ncRNA_intronic
CAediting_593664	chr7_107171739_+	ncRNA_intronic
CAediting_593665	chr7_107171745_+	ncRNA_intronic
CAediting_593666	chr7_107171756_+	ncRNA_intronic
CAediting_593667	chr7_107171762_+	ncRNA_intronic
CAediting_593668	chr7_107171766_+	ncRNA_intronic
CAediting_593669	chr7_107171767_+	ncRNA_intronic
CAediting_593670	chr7_107171780_+	ncRNA_intronic
CAediting_593671	chr7_107171781_+	ncRNA_intronic
CAediting_593672	chr7_107171792_+	ncRNA_intronic
CAediting_593673	chr7_107171845_+	ncRNA_intronic
CAediting_593674	chr7_107172395_+	ncRNA_intronic
CAediting_593675	chr7_107172396_+	ncRNA_intronic
CAediting_593676	chr7_107172400_+	ncRNA_intronic
CAediting_593677	chr7_107172419_+	ncRNA_intronic
CAediting_593678	chr7_107172422_+	ncRNA_intronic
CAediting_593679	chr7_107172423_+	ncRNA_intronic
CAediting_593680	chr7_107172429_+	ncRNA_intronic
CAediting_593681	chr7_107172432_+	ncRNA_intronic
CAediting_593682	chr7_107172776_+	ncRNA_intronic
CAediting_593683	chr7_107172827_+	ncRNA_intronic
CAediting_593684	chr7_107176106_+	intronic
CAediting_593685	chr7_107176209_+	intronic
CAediting_593686	chr7_107193737_+	ncRNA_intronic
CAediting_593687	chr7_107195072_+	ncRNA_intronic
CAediting_593688	chr7_107195163_+	ncRNA_intronic
CAediting_593689	chr7_107195167_+	ncRNA_intronic
CAediting_593690	chr7_107195205_+	ncRNA_intronic
CAediting_593691	chr7_107195242_+	ncRNA_intronic
CAediting_593692	chr7_107196313_+	exonic
CAediting_593693	chr7_107196398_+	ncRNA_intronic
CAediting_593694	chr7_107196418_+	ncRNA_intronic
CAediting_593695	chr7_107196453_+	ncRNA_intronic
CAediting_593696	chr7_107196529_+	ncRNA_intronic
CAediting_593697	chr7_107196530_+	ncRNA_intronic
CAediting_593698	chr7_107196708_+	ncRNA_intronic
CAediting_593699	chr7_107196710_+	ncRNA_intronic
CAediting_593700	chr7_107196723_+	ncRNA_intronic
CAediting_593701	chr7_107196784_+	ncRNA_intronic
CAediting_593702	chr7_107196797_+	ncRNA_intronic
CAediting_593703	chr7_107196854_+	ncRNA_intronic
CAediting_593704	chr7_107196867_+	ncRNA_intronic
CAediting_593705	chr7_107197579_+	ncRNA_intronic
CAediting_593706	chr7_107198439_+	ncRNA_intronic
CAediting_593707	chr7_107199185_+	ncRNA_intronic
CAediting_593708	chr7_107199225_+	ncRNA_intronic
CAediting_593709	chr7_107199238_+	ncRNA_intronic
CAediting_593710	chr7_107200035_+	ncRNA_intronic
CAediting_593711	chr7_107200166_+	exonic
CAediting_593712	chr7_107200167_+	exonic
CAediting_593713	chr7_107200561_+	ncRNA_exonic
CAediting_593714	chr7_107200562_+	ncRNA_exonic
CAediting_593715	chr7_107200828_+	ncRNA_exonic
CAediting_593716	chr7_107201421_+	exonic
CAediting_593717	chr7_107201425_+	exonic
CAediting_593718	chr7_107201430_+	exonic
CAediting_593719	chr7_107201495_+	UTR3
CAediting_593720	chr7_107201499_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_593651	chr7_107171209_+	SINE	Alu	AluSc
CAediting_593652	chr7_107171292_+	SINE	Alu	AluSc
CAediting_593654	chr7_107171603_+	SINE	Alu	AluSx
CAediting_593655	chr7_107171623_+	SINE	Alu	AluSx
CAediting_593656	chr7_107171662_+	SINE	Alu	AluSx
CAediting_593657	chr7_107171663_+	SINE	Alu	AluSx
CAediting_593658	chr7_107171698_+	SINE	Alu	AluSx
CAediting_593659	chr7_107171699_+	SINE	Alu	AluSx
CAediting_593660	chr7_107171701_+	SINE	Alu	AluSx
CAediting_593661	chr7_107171704_+	SINE	Alu	AluSx
CAediting_593662	chr7_107171713_+	SINE	Alu	AluSx
CAediting_593663	chr7_107171731_+	SINE	Alu	AluSx
CAediting_593664	chr7_107171739_+	SINE	Alu	AluSx
CAediting_593665	chr7_107171745_+	SINE	Alu	AluSx
CAediting_593666	chr7_107171756_+	SINE	Alu	AluSx
CAediting_593667	chr7_107171762_+	SINE	Alu	AluSx
CAediting_593668	chr7_107171766_+	SINE	Alu	AluSx
CAediting_593669	chr7_107171767_+	SINE	Alu	AluSx
CAediting_593670	chr7_107171780_+	SINE	Alu	AluSx
CAediting_593671	chr7_107171781_+	SINE	Alu	AluSx
CAediting_593672	chr7_107171792_+	SINE	Alu	AluSx
CAediting_593673	chr7_107171845_+	SINE	Alu	AluSx
CAediting_593682	chr7_107172776_+	SINE	Alu	FLAM_C
CAediting_593683	chr7_107172827_+	SINE	Alu	FLAM_C
CAediting_593684	chr7_107176106_+	SINE	Alu	AluSg
CAediting_593685	chr7_107176209_+	SINE	Alu	AluSg
CAediting_593687	chr7_107195072_+	SINE	Alu	AluSx
CAediting_593688	chr7_107195163_+	SINE	Alu	AluSx
CAediting_593689	chr7_107195167_+	SINE	Alu	AluSx
CAediting_593690	chr7_107195205_+	SINE	Alu	AluSx
CAediting_593691	chr7_107195242_+	SINE	Alu	AluSx
CAediting_593692	chr7_107196313_+	SINE	Alu	AluSx3
CAediting_593693	chr7_107196398_+	SINE	Alu	AluSx3
CAediting_593694	chr7_107196418_+	SINE	Alu	AluSx3
CAediting_593695	chr7_107196453_+	SINE	Alu	AluSx3
CAediting_593696	chr7_107196529_+	SINE	Alu	AluSx3
CAediting_593697	chr7_107196530_+	SINE	Alu	AluSx3
CAediting_593698	chr7_107196708_+	SINE	Alu	AluJb
CAediting_593699	chr7_107196710_+	SINE	Alu	AluJb
CAediting_593700	chr7_107196723_+	SINE	Alu	AluJb
CAediting_593701	chr7_107196784_+	SINE	Alu	AluJb
CAediting_593702	chr7_107196797_+	SINE	Alu	AluJb
CAediting_593703	chr7_107196854_+	SINE	Alu	AluJb
CAediting_593704	chr7_107196867_+	SINE	Alu	AluJb
CAediting_593705	chr7_107197579_+	SINE	Alu	AluSz
CAediting_593706	chr7_107198439_+	SINE	Alu	AluSx3
CAediting_593707	chr7_107199185_+	SINE	Alu	AluSz6
CAediting_593708	chr7_107199225_+	SINE	Alu	AluSz6
CAediting_593709	chr7_107199238_+	SINE	Alu	AluSz6

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RNA A-to-I editing events in the alternative splicing sites for HBP1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000105856.12.HBP1.

Correlation between RNA A-to-I editing and PSI for ENSG00000105856.12.HBP1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HBP1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HBP1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for HBP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_593719	chr7_107201495_+	ENSG00000105856.12	ENST00000468410	hsa-miR-513c-5p	107201491	107201498	8mer-1a	107201477	107201498	140.00	-15.31
CAediting_593719	chr7_107201495_+	ENSG00000105856.12	ENST00000468410	hsa-miR-514b-5p	107201491	107201498	8mer-1a	107201477	107201498	140.00	-12.39
CAediting_593719	chr7_107201495_+	ENSG00000105856.12	ENST00000485846	hsa-miR-513c-5p	107201491	107201498	8mer-1a	107201477	107201498	140.00	-15.31
CAediting_593719	chr7_107201495_+	ENSG00000105856.12	ENST00000485846	hsa-miR-514b-5p	107201491	107201498	8mer-1a	107201477	107201498	140.00	-12.39
CAediting_593720	chr7_107201499_+	ENSG00000105856.12	ENST00000468410	hsa-miR-6881-3p	107201494	107201500	7mer-m8	107201480	107201501	166.00	-20.96
CAediting_593720	chr7_107201499_+	ENSG00000105856.12	ENST00000485846	hsa-miR-6881-3p	107201494	107201500	7mer-m8	107201480	107201501	166.00	-20.96
CAediting_593693	chr7_107196398_+	ENSG00000105856.12	ENST00000498408	hsa-miR-3157-5p	107196396	107196402	7mer-m8	107196375	107196403	142.00	-24.52
CAediting_593693	chr7_107196398_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4691-3p	107196395	107196402	8mer-1a	107196384	107196402	151.00	-24.44
CAediting_593694	chr7_107196418_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4767	107196412	107196418	7mer-m8	107196397	107196419	157.00	-23.93
CAediting_593694	chr7_107196418_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6499-5p	107196411	107196417	7mer-m8	107196395	107196418	145.00	-23.12
CAediting_593696	chr7_107196529_+	ENSG00000105856.12	ENST00000498408	hsa-miR-3059-3p	107196524	107196530	7mer-m8	107196511	107196531	157.00	-21.82
CAediting_593696	chr7_107196529_+	ENSG00000105856.12	ENST00000498408	hsa-miR-5684	107196525	107196531	7mer-m8	107196513	107196532	140.00	-12.42
CAediting_593702	chr7_107196797_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4304	107196790	107196796	7mer-m8	107196780	107196797	148.00	-16.87
CAediting_593702	chr7_107196797_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6770-3p	107196793	107196799	7mer-m8	107196779	107196800	162.00	-24.83
CAediting_593702	chr7_107196797_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6770-3p	107196793	107196799	7mer-m8	107196779	107196800	162.00	-24.83
CAediting_593702	chr7_107196797_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6770-3p	107196793	107196799	7mer-m8	107196779	107196800	162.00	-24.83
CAediting_593703	chr7_107196854_+	ENSG00000105856.12	ENST00000498408	hsa-miR-3940-3p	107196851	107196857	7mer-m8	107196837	107196858	148.00	-22.76
CAediting_593703	chr7_107196854_+	ENSG00000105856.12	ENST00000498408	hsa-miR-7112-5p	107196848	107196853	6mer	107196833	107196854	140.00	-25.07
CAediting_593704	chr7_107196867_+	ENSG00000105856.12	ENST00000498408	hsa-miR-28-5p	107196865	107196871	7mer-m8	107196852	107196872	143.00	-18.76
CAediting_593704	chr7_107196867_+	ENSG00000105856.12	ENST00000498408	hsa-miR-3139	107196865	107196871	7mer-m8	107196850	107196872	157.00	-23.25
CAediting_593704	chr7_107196867_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4538	107196863	107196868	6mer	107196846	107196869	149.00	-29.79
CAediting_593704	chr7_107196867_+	ENSG00000105856.12	ENST00000498408	hsa-miR-708-5p	107196865	107196871	7mer-m8	107196851	107196872	154.00	-22.59
CAediting_593692	chr7_107196313_+	ENSG00000105856.12	ENST00000498408	hsa-miR-661	107196308	107196314	7mer-m8	107196291	107196315	147.00	-24.03
CAediting_593692	chr7_107196313_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6742-3p	107196307	107196313	7mer-m8	107196295	107196314	141.00	-14.08
CAediting_593692	chr7_107196313_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6776-5p	107196306	107196312	7mer-m8	107196292	107196313	151.00	-27.19
CAediting_593692	chr7_107196313_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6849-3p	107196311	107196318	8mer-1a	107196296	107196318	155.00	-20.49
CAediting_593698	chr7_107196708_+	ENSG00000105856.12	ENST00000498408	hsa-miR-3130-3p	107196705	107196710	6mer	107196691	107196711	143.00	-27.67
CAediting_593698	chr7_107196708_+	ENSG00000105856.12	ENST00000498408	hsa-miR-3130-3p	107196705	107196710	6mer	107196691	107196711	143.00	-27.67
CAediting_593698	chr7_107196708_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4793-3p	107196704	107196710	7mer-m8	107196688	107196711	159.00	-24.59

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_593700	chr7_107196723_+	ENSG00000105856.12	ENST00000498408	hsa-miR-3174	107196718	107196724	7mer-m8	107196704	107196725	153	-17.51
CAediting_593692	chr7_107196313_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4453	107196309	107196315	7mer-m8	107196295	107196316	148	-18.68
CAediting_593692	chr7_107196313_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4538	107196309	107196315	7mer-m8	107196291	107196316	155	-19.16
CAediting_593698	chr7_107196708_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4718	107196705	107196711	7mer-m8	107196693	107196712	150	-14.73
CAediting_593699	chr7_107196710_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4718	107196705	107196711	7mer-m8	107196693	107196712	150	-14.73
CAediting_593698	chr7_107196708_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4999-5p	107196706	107196711	6mer	107196693	107196712	140	-19.54
CAediting_593699	chr7_107196710_+	ENSG00000105856.12	ENST00000498408	hsa-miR-4999-5p	107196706	107196711	6mer	107196693	107196712	140	-19.54
CAediting_593703	chr7_107196854_+	ENSG00000105856.12	ENST00000498408	hsa-miR-5189-5p	107196848	107196854	7mer-m8	107196830	107196855	150	-23.67
CAediting_593694	chr7_107196418_+	ENSG00000105856.12	ENST00000498408	hsa-miR-541-3p	107196413	107196420	8mer-1a	107196397	107196420	143	-20.59
CAediting_593693	chr7_107196398_+	ENSG00000105856.12	ENST00000498408	hsa-miR-5690	107196395	107196402	8mer-1a	107196382	107196402	145	-17.08
CAediting_593695	chr7_107196453_+	ENSG00000105856.12	ENST00000498408	hsa-miR-593-3p	107196452	107196458	7mer-1a	107196440	107196458	140	-19.02
CAediting_593703	chr7_107196854_+	ENSG00000105856.12	ENST00000498408	hsa-miR-612	107196848	107196854	7mer-m8	107196831	107196855	146	-22.61
CAediting_593694	chr7_107196418_+	ENSG00000105856.12	ENST00000498408	hsa-miR-654-5p	107196413	107196420	8mer-1a	107196399	107196420	143	-21.26
CAediting_593703	chr7_107196854_+	ENSG00000105856.12	ENST00000498408	hsa-miR-661	107196850	107196856	7mer-m8	107196832	107196857	152	-25.09
CAediting_593703	chr7_107196854_+	ENSG00000105856.12	ENST00000498408	hsa-miR-6860	107196848	107196854	7mer-m8	107196837	107196855	143	-18.62
CAediting_593703	chr7_107196854_+	ENSG00000105856.12	ENST00000498408	hsa-miR-939-3p	107196849	107196855	7mer-m8	107196836	107196856	140	-16.03

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000105856.12	ENST00000468410	hsa-miR-4477b	107201519	107201525	7mer-m8	107201504	107201526	160	-20.06
CAediting_688080	chr9_63819626_+	ENSG00000105856.12	ENST00000485846	hsa-miR-4477b	107201519	107201525	7mer-m8	107201504	107201526	160	-20.06
CAediting_1229415	chr17_67471547_+	ENSG00000105856.12	ENST00000468410	hsa-miR-548aa	107202365	107202371	7mer-m8	107202348	107202372	149	-10.45
CAediting_117844	chr1_162342605_+	ENSG00000105856.12	ENST00000468410	hsa-miR-556-3p	107202330	107202336	7mer-m8	107202314	107202337	150	-13.29
CAediting_524911	chr7_5495852_-	ENSG00000105856.12	ENST00000468410	hsa-miR-589-3p	107202347	107202354	8mer-1a	107202331	107202354	161	-19.67
CAediting_86358	chr1_109598906_+	ENSG00000105856.12	ENST00000498408	hsa-miR-197-5p	107196507	107196514	8mer-1a	107196488	107196514	154	-27.41

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_117844	chr1_162342605_+	ENSG00000105856.12	ENST00000468410	hsa-miR-556-3p	107201682	107201689	8mer-1a	107201668	107201689	145	-9.63
CAediting_524911	chr7_5495852_-	ENSG00000105856.12	ENST00000468410	hsa-miR-589-3p	107202188	107202194	7mer-m8	107202172	107202195	140	-10.29
CAediting_1368054	chr19_46709310_-	ENSG00000105856.12	ENST00000498408	hsa-miR-320e	107196760	107196765	6mer	107196749	107196766	143	-17.14

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HBP1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000222574.7	protein_coding
ENST00000468410.4	protein_coding
ENST00000485846.4	protein_coding
ENST00000461963.1	processed_transcript
ENST00000463202.4	retained_intron
ENST00000498408.1	protein_coding
ENST00000463790.1	nonsense_mediated_decay
ENST00000607681.1	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_593711	ENST00000222574.7	chr7_107200166_+	-852.50	-849.60	-858.20
CAediting_593712	ENST00000222574.7	chr7_107200167_+	-849.60	-849.60	-858.20
CAediting_593716	ENST00000222574.7	chr7_107201421_+	-853.40	-849.60	-858.20
CAediting_593717	ENST00000222574.7	chr7_107201425_+	-852.80	-849.60	-858.20
CAediting_593718	ENST00000222574.7	chr7_107201430_+	-849.60	-849.60	-858.20
CAediting_593719	ENST00000222574.7	chr7_107201495_+	-851.10	-849.60	-858.20
CAediting_593720	ENST00000222574.7	chr7_107201499_+	-849.60	-849.60	-858.20
CAediting_593711	ENST00000468410.4	chr7_107200166_+	-791.90	-789.00	-797.60
CAediting_593712	ENST00000468410.4	chr7_107200167_+	-789.00	-789.00	-797.60
CAediting_593716	ENST00000468410.4	chr7_107201421_+	-789.00	-789.00	-797.60
CAediting_593717	ENST00000468410.4	chr7_107201425_+	-792.20	-789.00	-797.60
CAediting_593718	ENST00000468410.4	chr7_107201430_+	-789.00	-789.00	-797.60
CAediting_593719	ENST00000468410.4	chr7_107201495_+	-790.50	-789.00	-797.60
CAediting_593720	ENST00000468410.4	chr7_107201499_+	-789.00	-789.00	-797.60
CAediting_593711	ENST00000485846.4	chr7_107200166_+	-720.80	-719.70	-727.00
CAediting_593712	ENST00000485846.4	chr7_107200167_+	-720.00	-719.70	-727.00
CAediting_593716	ENST00000485846.4	chr7_107201421_+	-719.70	-719.70	-727.00
CAediting_593717	ENST00000485846.4	chr7_107201425_+	-721.90	-719.70	-727.00
CAediting_593718	ENST00000485846.4	chr7_107201430_+	-719.70	-719.70	-727.00
CAediting_593719	ENST00000485846.4	chr7_107201495_+	-722.20	-719.70	-727.00
CAediting_593720	ENST00000485846.4	chr7_107201499_+	-720.30	-719.70	-727.00
CAediting_593711	ENST00000461963.1	chr7_107200166_+	-152.90	-151.80	-153.50
CAediting_593712	ENST00000461963.1	chr7_107200167_+	-152.40	-151.80	-153.50
CAediting_593711	ENST00000463202.4	chr7_107200166_+	-733.40	-732.30	-736.80
CAediting_593712	ENST00000463202.4	chr7_107200167_+	-732.60	-732.30	-736.80
CAediting_593713	ENST00000463202.4	chr7_107200561_+	-732.30	-732.30	-736.80
CAediting_593714	ENST00000463202.4	chr7_107200562_+	-735.00	-732.30	-736.80
CAediting_593715	ENST00000463202.4	chr7_107200828_+	-732.50	-732.30	-736.80
CAediting_593692	ENST00000498408.1	chr7_107196313_+	-678.50	-675.00	-700.10
CAediting_593693	ENST00000498408.1	chr7_107196398_+	-679.30	-675.00	-700.10
CAediting_593694	ENST00000498408.1	chr7_107196418_+	-677.30	-675.00	-700.10
CAediting_593695	ENST00000498408.1	chr7_107196453_+	-676.10	-675.00	-700.10
CAediting_593696	ENST00000498408.1	chr7_107196529_+	-676.00	-675.00	-700.10
CAediting_593697	ENST00000498408.1	chr7_107196530_+	-681.60	-675.00	-700.10
CAediting_593698	ENST00000498408.1	chr7_107196708_+	-679.40	-675.00	-700.10
CAediting_593699	ENST00000498408.1	chr7_107196710_+	-678.00	-675.00	-700.10
CAediting_593700	ENST00000498408.1	chr7_107196723_+	-676.90	-675.00	-700.10
CAediting_593701	ENST00000498408.1	chr7_107196784_+	-677.80	-675.00	-700.10
CAediting_593702	ENST00000498408.1	chr7_107196797_+	-676.80	-675.00	-700.10
CAediting_593703	ENST00000498408.1	chr7_107196854_+	-675.00	-675.00	-700.10
CAediting_593704	ENST00000498408.1	chr7_107196867_+	-675.30	-675.00	-700.10
CAediting_593692	ENST00000463790.1	chr7_107196313_+	-112.40	-111.00	-118.30
CAediting_593711	ENST00000463790.1	chr7_107200166_+	-111.00	-111.00	-118.30
CAediting_593712	ENST00000463790.1	chr7_107200167_+	-113.60	-111.00	-118.30
CAediting_593716	ENST00000463790.1	chr7_107201421_+	-111.40	-111.00	-118.30
CAediting_593717	ENST00000463790.1	chr7_107201425_+	-113.40	-111.00	-118.30
CAediting_593718	ENST00000463790.1	chr7_107201430_+	-111.00	-111.00	-118.30
CAediting_593711	ENST00000607681.1	chr7_107200166_+	-115.30	-114.20	-115.90
CAediting_593712	ENST00000607681.1	chr7_107200167_+	-114.50	-114.20	-115.90

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Relation with ADAR for HBP1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for HBP1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for HBP1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for HBP1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for HBP1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene