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Editing gene: PTPN18 (CAeditome ID:26469)

Gene summary for PTPN18

Gene summary

Gene information	Gene symbol	PTPN18
	Gene ID	26469
	Gene name	protein tyrosine phosphatase non-receptor type 18
	Synonyms	BDP1\|PTP-HSCF
	Cytomap	2q21.1
	Type of gene	protein-coding
	Description	tyrosine-protein phosphatase non-receptor type 18brain-derived phosphataseprotein tyrosine phosphatase, non-receptor type 18 (brain-derived)
	Modification date	20210518
	UniProtAcc	Q99952
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for PTPN18

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000072135.11

RNA A-to-I editing events in Cancer.

CAediting_212808(130360855, +), CAediting_212809(130360887, +), CAediting_212810(130360895, +), CAediting_212811(130360896, +), CAediting_212812(130360926, +), CAediting_212813(130360931, +), CAediting_212814(130360935, +), CAediting_212815(130360958, +), CAediting_212816(130360961, +), CAediting_212817(130360965, +), CAediting_212818(130360971, +), CAediting_212819(130360977, +), CAediting_212820(130361608, +), CAediting_212821(130361638, +), CAediting_212822(130361643, +), CAediting_212823(130361644, +), CAediting_212824(130361652, +), CAediting_212825(130361681, +), CAediting_212826(130361688, +), CAediting_212827(130361717, +), CAediting_212828(130361762, +), CAediting_212829(130361768, +), CAediting_212830(130361785, +), CAediting_212831(130361808, +), CAediting_212832(130361810, +), CAediting_212833(130361840, +), CAediting_212834(130361849, +), CAediting_212835(130361850, +), CAediting_212836(130361857, +), CAediting_212837(130361862, +), CAediting_212838(130362019, +), CAediting_212839(130362023, +), CAediting_212840(130362042, +), CAediting_212841(130362080, +), CAediting_212842(130362098, +), CAediting_212843(130362108, +), CAediting_212844(130362156, +), CAediting_212845(130362161, +), CAediting_212846(130362162, +), CAediting_212847(130362168, +), CAediting_212848(130362172, +), CAediting_212849(130362174, +), CAediting_212850(130362175, +), CAediting_212851(130362179, +), CAediting_212852(130362192, +), CAediting_212853(130362204, +), CAediting_212854(130362205, +), CAediting_212855(130362217, +), CAediting_212856(130362230, +), CAediting_212857(130362232, +), CAediting_212858(130362241, +), CAediting_212859(130362244, +), CAediting_212860(130362246, +), CAediting_212861(130362253, +), CAediting_212862(130362262, +), CAediting_212863(130362266, +), CAediting_212864(130362839, +), CAediting_212865(130362841, +), CAediting_212866(130362870, +), CAediting_212867(130362875, +), CAediting_212868(130362889, +), CAediting_212869(130362899, +), CAediting_212870(130362919, +), CAediting_212871(130362949, +), CAediting_212872(130362956, +), CAediting_212873(130363081, +), CAediting_212874(130363093, +), CAediting_212875(130363102, +), CAediting_212876(130363171, +), CAediting_212877(130363185, +), CAediting_212878(130363193, +), CAediting_212879(130363194, +), CAediting_212880(130363199, +), CAediting_212881(130363210, +), CAediting_212882(130363229, +), CAediting_212883(130363232, +), CAediting_212884(130363237, +), CAediting_212885(130363242, +), CAediting_212886(130363246, +), CAediting_212887(130363248, +), CAediting_212888(130363251, +), CAediting_212889(130363260, +), CAediting_212890(130363261, +), CAediting_212891(130363265, +), CAediting_212892(130363269, +), CAediting_212893(130363270, +), CAediting_212894(130363271, +), CAediting_212895(130363282, +), CAediting_212896(130363285, +), CAediting_212897(130363286, +), CAediting_212898(130363289, +), CAediting_212899(130363291, +), CAediting_212900(130363300, +), CAediting_212901(130363326, +), CAediting_212902(130363327, +), CAediting_212903(130363332, +), CAediting_212904(130363335, +), CAediting_212905(130363336, +), CAediting_212906(130363343, +), CAediting_212907(130363349, +), CAediting_212908(130363353, +), CAediting_212909(130363355, +), CAediting_212910(130363356, +), CAediting_212911(130363359, +), CAediting_212912(130363367, +), CAediting_212913(130363368, +), CAediting_212914(130363375, +), CAediting_212915(130363381, +), CAediting_212916(130363392, +), CAediting_212917(130363397, +), CAediting_212918(130363399, +), CAediting_212919(130363407, +), CAediting_212920(130363410, +), CAediting_212921(130363412, +), CAediting_212922(130363426, +), CAediting_212923(130363430, +), CAediting_212924(130363433, +), CAediting_212925(130363434, +), CAediting_212926(130363456, +), CAediting_212927(130363462, +), CAediting_212928(130364523, +), CAediting_212929(130364525, +), CAediting_212930(130364533, +), CAediting_212931(130364541, +), CAediting_212932(130364542, +), CAediting_212933(130364547, +), CAediting_212934(130364565, +), CAediting_212935(130364568, +), CAediting_212936(130364572, +), CAediting_212937(130364574, +), CAediting_212938(130364580, +), CAediting_212939(130364585, +), CAediting_212940(130364594, +), CAediting_212941(130364609, +), CAediting_212942(130364611, +), CAediting_212943(130364614, +), CAediting_212944(130364617, +), CAediting_212945(130364618, +), CAediting_212946(130364633, +), CAediting_212947(130364634, +), CAediting_212948(130364636, +), CAediting_212949(130364637, +), CAediting_212950(130364639, +), CAediting_212951(130364642, +), CAediting_212952(130364643, +), CAediting_212953(130364644, +), CAediting_212954(130364645, +), CAediting_212955(130364649, +), CAediting_212956(130364675, +), CAediting_212957(130364681, +), CAediting_212958(130364685, +), CAediting_212959(130364702, +), CAediting_212960(130364753, +), CAediting_212961(130364778, +), CAediting_212962(130364784, +), CAediting_212963(130366856, +), CAediting_212964(130366903, +), CAediting_212965(130366909, +), CAediting_212966(130366910, +), CAediting_212967(130366923, +), CAediting_212968(130366924, +), CAediting_212969(130366927, +), CAediting_212970(130366928, +), CAediting_212971(130366936, +), CAediting_212972(130366941, +), CAediting_212973(130366949, +), CAediting_212974(130366950, +), CAediting_212975(130366963, +), CAediting_212976(130367079, +), CAediting_212977(130367080, +), CAediting_212978(130367100, +), CAediting_212979(130367123, +), CAediting_212980(130367126, +), CAediting_212981(130367127, +), CAediting_212982(130367140, +), CAediting_212983(130367148, +), CAediting_212984(130367418, +), CAediting_212985(130367419, +), CAediting_212986(130367424, +), CAediting_212987(130367440, +), CAediting_212988(130367441, +), CAediting_212989(130367445, +), CAediting_212990(130367454, +), CAediting_212991(130367459, +), CAediting_212992(130367473, +), CAediting_212993(130367478, +), CAediting_212994(130367488, +), CAediting_212995(130367496, +), CAediting_212996(130367497, +), CAediting_212997(130367498, +), CAediting_212998(130367509, +), CAediting_212999(130367512, +), CAediting_213000(130367513, +), CAediting_213001(130367514, +), CAediting_213002(130367515, +), CAediting_213003(130367521, +), CAediting_213004(130367522, +), CAediting_213005(130367523, +), CAediting_213006(130367535, +), CAediting_213007(130367553, +), CAediting_213008(130367554, +), CAediting_213009(130367559, +), CAediting_213010(130367563, +), CAediting_213011(130367567, +), CAediting_213012(130367576, +), CAediting_213013(130367580, +), CAediting_213014(130367594, +), CAediting_213015(130367595, +), CAediting_213016(130367619, +), CAediting_213017(130367634, +), CAediting_213018(130367657, +), CAediting_213019(130367662, +), CAediting_213020(130371694, +), CAediting_213021(130371695, +), CAediting_213022(130371704, +), CAediting_213023(130371717, +), CAediting_213024(130371721, +), CAediting_213025(130371724, +), CAediting_213026(130371726, +), CAediting_213027(130371756, +), CAediting_213028(130371765, +), CAediting_213029(130371772, +), CAediting_213030(130374350, +), CAediting_213031(130374351, +), CAediting_213032(130374354, +), CAediting_213033(130374368, +), CAediting_213034(130374407, +),

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RNA editing positional annotations for PTPN18 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_212808	chr2_130360855_+	ncRNA_intronic
CAediting_212809	chr2_130360887_+	ncRNA_intronic
CAediting_212810	chr2_130360895_+	ncRNA_intronic
CAediting_212811	chr2_130360896_+	ncRNA_intronic
CAediting_212812	chr2_130360926_+	ncRNA_intronic
CAediting_212813	chr2_130360931_+	ncRNA_intronic
CAediting_212814	chr2_130360935_+	ncRNA_intronic
CAediting_212815	chr2_130360958_+	ncRNA_intronic
CAediting_212816	chr2_130360961_+	ncRNA_intronic
CAediting_212817	chr2_130360965_+	ncRNA_intronic
CAediting_212818	chr2_130360971_+	ncRNA_intronic
CAediting_212819	chr2_130360977_+	ncRNA_intronic
CAediting_212820	chr2_130361608_+	ncRNA_intronic
CAediting_212821	chr2_130361638_+	ncRNA_intronic
CAediting_212822	chr2_130361643_+	ncRNA_intronic
CAediting_212823	chr2_130361644_+	ncRNA_intronic
CAediting_212824	chr2_130361652_+	ncRNA_intronic
CAediting_212825	chr2_130361681_+	ncRNA_intronic
CAediting_212826	chr2_130361688_+	ncRNA_intronic
CAediting_212827	chr2_130361717_+	ncRNA_intronic
CAediting_212828	chr2_130361762_+	ncRNA_intronic
CAediting_212829	chr2_130361768_+	ncRNA_intronic
CAediting_212830	chr2_130361785_+	ncRNA_intronic
CAediting_212831	chr2_130361808_+	ncRNA_intronic
CAediting_212832	chr2_130361810_+	ncRNA_intronic
CAediting_212833	chr2_130361840_+	ncRNA_intronic
CAediting_212834	chr2_130361849_+	ncRNA_intronic
CAediting_212835	chr2_130361850_+	ncRNA_intronic
CAediting_212836	chr2_130361857_+	ncRNA_intronic
CAediting_212837	chr2_130361862_+	ncRNA_intronic
CAediting_212838	chr2_130362019_+	ncRNA_intronic
CAediting_212839	chr2_130362023_+	ncRNA_intronic
CAediting_212840	chr2_130362042_+	ncRNA_intronic
CAediting_212841	chr2_130362080_+	ncRNA_intronic
CAediting_212842	chr2_130362098_+	ncRNA_intronic
CAediting_212843	chr2_130362108_+	ncRNA_intronic
CAediting_212844	chr2_130362156_+	ncRNA_exonic
CAediting_212845	chr2_130362161_+	ncRNA_exonic
CAediting_212846	chr2_130362162_+	ncRNA_exonic
CAediting_212847	chr2_130362168_+	ncRNA_exonic
CAediting_212848	chr2_130362172_+	ncRNA_exonic
CAediting_212849	chr2_130362174_+	ncRNA_exonic
CAediting_212850	chr2_130362175_+	ncRNA_exonic
CAediting_212851	chr2_130362179_+	ncRNA_exonic
CAediting_212852	chr2_130362192_+	ncRNA_exonic
CAediting_212853	chr2_130362204_+	ncRNA_exonic
CAediting_212854	chr2_130362205_+	ncRNA_exonic
CAediting_212855	chr2_130362217_+	ncRNA_exonic
CAediting_212856	chr2_130362230_+	ncRNA_exonic
CAediting_212857	chr2_130362232_+	ncRNA_exonic
CAediting_212858	chr2_130362241_+	ncRNA_exonic
CAediting_212859	chr2_130362244_+	ncRNA_exonic
CAediting_212860	chr2_130362246_+	ncRNA_exonic
CAediting_212861	chr2_130362253_+	ncRNA_exonic
CAediting_212862	chr2_130362262_+	ncRNA_exonic
CAediting_212863	chr2_130362266_+	ncRNA_exonic
CAediting_212864	chr2_130362839_+	ncRNA_intronic
CAediting_212865	chr2_130362841_+	ncRNA_intronic
CAediting_212866	chr2_130362870_+	ncRNA_intronic
CAediting_212867	chr2_130362875_+	ncRNA_intronic
CAediting_212868	chr2_130362889_+	ncRNA_intronic
CAediting_212869	chr2_130362899_+	ncRNA_intronic
CAediting_212870	chr2_130362919_+	ncRNA_intronic
CAediting_212871	chr2_130362949_+	ncRNA_intronic
CAediting_212872	chr2_130362956_+	ncRNA_intronic
CAediting_212873	chr2_130363081_+	ncRNA_intronic
CAediting_212874	chr2_130363093_+	ncRNA_intronic
CAediting_212875	chr2_130363102_+	ncRNA_intronic
CAediting_212876	chr2_130363171_+	ncRNA_intronic
CAediting_212877	chr2_130363185_+	ncRNA_intronic
CAediting_212878	chr2_130363193_+	ncRNA_intronic
CAediting_212879	chr2_130363194_+	ncRNA_intronic
CAediting_212880	chr2_130363199_+	ncRNA_intronic
CAediting_212881	chr2_130363210_+	ncRNA_intronic
CAediting_212882	chr2_130363229_+	ncRNA_intronic
CAediting_212883	chr2_130363232_+	ncRNA_intronic
CAediting_212884	chr2_130363237_+	ncRNA_intronic
CAediting_212885	chr2_130363242_+	ncRNA_intronic
CAediting_212886	chr2_130363246_+	ncRNA_intronic
CAediting_212887	chr2_130363248_+	ncRNA_intronic
CAediting_212888	chr2_130363251_+	ncRNA_intronic
CAediting_212889	chr2_130363260_+	ncRNA_intronic
CAediting_212890	chr2_130363261_+	ncRNA_intronic
CAediting_212891	chr2_130363265_+	ncRNA_intronic
CAediting_212892	chr2_130363269_+	ncRNA_intronic
CAediting_212893	chr2_130363270_+	ncRNA_intronic
CAediting_212894	chr2_130363271_+	ncRNA_intronic
CAediting_212895	chr2_130363282_+	ncRNA_intronic
CAediting_212896	chr2_130363285_+	ncRNA_intronic
CAediting_212897	chr2_130363286_+	ncRNA_intronic
CAediting_212898	chr2_130363289_+	ncRNA_intronic
CAediting_212899	chr2_130363291_+	ncRNA_intronic
CAediting_212900	chr2_130363300_+	ncRNA_intronic
CAediting_212901	chr2_130363326_+	ncRNA_intronic
CAediting_212902	chr2_130363327_+	ncRNA_intronic
CAediting_212903	chr2_130363332_+	ncRNA_intronic
CAediting_212904	chr2_130363335_+	ncRNA_intronic
CAediting_212905	chr2_130363336_+	ncRNA_intronic
CAediting_212906	chr2_130363343_+	ncRNA_intronic
CAediting_212907	chr2_130363349_+	ncRNA_intronic
CAediting_212908	chr2_130363353_+	ncRNA_intronic
CAediting_212909	chr2_130363355_+	ncRNA_intronic
CAediting_212910	chr2_130363356_+	ncRNA_intronic
CAediting_212911	chr2_130363359_+	ncRNA_intronic
CAediting_212912	chr2_130363367_+	ncRNA_intronic
CAediting_212913	chr2_130363368_+	ncRNA_intronic
CAediting_212914	chr2_130363375_+	ncRNA_intronic
CAediting_212915	chr2_130363381_+	ncRNA_intronic
CAediting_212916	chr2_130363392_+	ncRNA_intronic
CAediting_212917	chr2_130363397_+	ncRNA_intronic
CAediting_212918	chr2_130363399_+	ncRNA_intronic
CAediting_212919	chr2_130363407_+	ncRNA_intronic
CAediting_212920	chr2_130363410_+	ncRNA_intronic
CAediting_212921	chr2_130363412_+	ncRNA_intronic
CAediting_212922	chr2_130363426_+	ncRNA_intronic
CAediting_212923	chr2_130363430_+	ncRNA_intronic
CAediting_212924	chr2_130363433_+	ncRNA_intronic
CAediting_212925	chr2_130363434_+	ncRNA_intronic
CAediting_212926	chr2_130363456_+	ncRNA_intronic
CAediting_212927	chr2_130363462_+	ncRNA_intronic
CAediting_212928	chr2_130364523_+	ncRNA_intronic
CAediting_212929	chr2_130364525_+	ncRNA_intronic
CAediting_212930	chr2_130364533_+	ncRNA_intronic
CAediting_212931	chr2_130364541_+	ncRNA_intronic
CAediting_212932	chr2_130364542_+	ncRNA_intronic
CAediting_212933	chr2_130364547_+	ncRNA_intronic
CAediting_212934	chr2_130364565_+	ncRNA_intronic
CAediting_212935	chr2_130364568_+	ncRNA_intronic
CAediting_212936	chr2_130364572_+	ncRNA_intronic
CAediting_212937	chr2_130364574_+	ncRNA_intronic
CAediting_212938	chr2_130364580_+	ncRNA_intronic
CAediting_212939	chr2_130364585_+	ncRNA_intronic
CAediting_212940	chr2_130364594_+	ncRNA_intronic
CAediting_212941	chr2_130364609_+	ncRNA_intronic
CAediting_212942	chr2_130364611_+	ncRNA_intronic
CAediting_212943	chr2_130364614_+	ncRNA_intronic
CAediting_212944	chr2_130364617_+	ncRNA_intronic
CAediting_212945	chr2_130364618_+	ncRNA_intronic
CAediting_212946	chr2_130364633_+	ncRNA_intronic
CAediting_212947	chr2_130364634_+	ncRNA_intronic
CAediting_212948	chr2_130364636_+	ncRNA_intronic
CAediting_212949	chr2_130364637_+	ncRNA_intronic
CAediting_212950	chr2_130364639_+	ncRNA_intronic
CAediting_212951	chr2_130364642_+	ncRNA_intronic
CAediting_212952	chr2_130364643_+	ncRNA_intronic
CAediting_212953	chr2_130364644_+	ncRNA_intronic
CAediting_212954	chr2_130364645_+	ncRNA_intronic
CAediting_212955	chr2_130364649_+	ncRNA_intronic
CAediting_212956	chr2_130364675_+	ncRNA_intronic
CAediting_212957	chr2_130364681_+	ncRNA_intronic
CAediting_212958	chr2_130364685_+	ncRNA_intronic
CAediting_212959	chr2_130364702_+	ncRNA_intronic
CAediting_212960	chr2_130364753_+	ncRNA_intronic
CAediting_212961	chr2_130364778_+	ncRNA_intronic
CAediting_212962	chr2_130364784_+	ncRNA_intronic
CAediting_212963	chr2_130366856_+	ncRNA_intronic
CAediting_212964	chr2_130366903_+	ncRNA_intronic
CAediting_212965	chr2_130366909_+	ncRNA_intronic
CAediting_212966	chr2_130366910_+	ncRNA_intronic
CAediting_212967	chr2_130366923_+	ncRNA_intronic
CAediting_212968	chr2_130366924_+	ncRNA_intronic
CAediting_212969	chr2_130366927_+	ncRNA_intronic
CAediting_212970	chr2_130366928_+	ncRNA_intronic
CAediting_212971	chr2_130366936_+	ncRNA_intronic
CAediting_212972	chr2_130366941_+	ncRNA_intronic
CAediting_212973	chr2_130366949_+	ncRNA_intronic
CAediting_212974	chr2_130366950_+	ncRNA_intronic
CAediting_212975	chr2_130366963_+	ncRNA_intronic
CAediting_212976	chr2_130367079_+	ncRNA_intronic
CAediting_212977	chr2_130367080_+	ncRNA_intronic
CAediting_212978	chr2_130367100_+	ncRNA_intronic
CAediting_212979	chr2_130367123_+	ncRNA_intronic
CAediting_212980	chr2_130367126_+	ncRNA_intronic
CAediting_212981	chr2_130367127_+	ncRNA_intronic
CAediting_212982	chr2_130367140_+	ncRNA_intronic
CAediting_212983	chr2_130367148_+	ncRNA_intronic
CAediting_212984	chr2_130367418_+	ncRNA_intronic
CAediting_212985	chr2_130367419_+	ncRNA_intronic
CAediting_212986	chr2_130367424_+	ncRNA_intronic
CAediting_212987	chr2_130367440_+	ncRNA_intronic
CAediting_212988	chr2_130367441_+	ncRNA_intronic
CAediting_212989	chr2_130367445_+	ncRNA_intronic
CAediting_212990	chr2_130367454_+	ncRNA_intronic
CAediting_212991	chr2_130367459_+	ncRNA_intronic
CAediting_212992	chr2_130367473_+	ncRNA_intronic
CAediting_212993	chr2_130367478_+	ncRNA_intronic
CAediting_212994	chr2_130367488_+	ncRNA_intronic
CAediting_212995	chr2_130367496_+	ncRNA_intronic
CAediting_212996	chr2_130367497_+	ncRNA_intronic
CAediting_212997	chr2_130367498_+	ncRNA_intronic
CAediting_212998	chr2_130367509_+	ncRNA_intronic
CAediting_212999	chr2_130367512_+	ncRNA_intronic
CAediting_213000	chr2_130367513_+	ncRNA_intronic
CAediting_213001	chr2_130367514_+	ncRNA_intronic
CAediting_213002	chr2_130367515_+	ncRNA_intronic
CAediting_213003	chr2_130367521_+	ncRNA_intronic
CAediting_213004	chr2_130367522_+	ncRNA_intronic
CAediting_213005	chr2_130367523_+	ncRNA_intronic
CAediting_213006	chr2_130367535_+	ncRNA_intronic
CAediting_213007	chr2_130367553_+	ncRNA_intronic
CAediting_213008	chr2_130367554_+	ncRNA_intronic
CAediting_213009	chr2_130367559_+	ncRNA_intronic
CAediting_213010	chr2_130367563_+	ncRNA_intronic
CAediting_213011	chr2_130367567_+	ncRNA_intronic
CAediting_213012	chr2_130367576_+	ncRNA_intronic
CAediting_213013	chr2_130367580_+	ncRNA_intronic
CAediting_213014	chr2_130367594_+	ncRNA_intronic
CAediting_213015	chr2_130367595_+	ncRNA_intronic
CAediting_213016	chr2_130367619_+	ncRNA_intronic
CAediting_213017	chr2_130367634_+	ncRNA_intronic
CAediting_213018	chr2_130367657_+	ncRNA_intronic
CAediting_213019	chr2_130367662_+	ncRNA_intronic
CAediting_213020	chr2_130371694_+	ncRNA_intronic
CAediting_213021	chr2_130371695_+	ncRNA_intronic
CAediting_213022	chr2_130371704_+	ncRNA_intronic
CAediting_213023	chr2_130371717_+	ncRNA_intronic
CAediting_213024	chr2_130371721_+	ncRNA_intronic
CAediting_213025	chr2_130371724_+	ncRNA_intronic
CAediting_213026	chr2_130371726_+	ncRNA_intronic
CAediting_213027	chr2_130371756_+	ncRNA_intronic
CAediting_213028	chr2_130371765_+	ncRNA_intronic
CAediting_213029	chr2_130371772_+	ncRNA_intronic
CAediting_213030	chr2_130374350_+	ncRNA_exonic
CAediting_213031	chr2_130374351_+	ncRNA_exonic
CAediting_213032	chr2_130374354_+	ncRNA_exonic
CAediting_213033	chr2_130374368_+	ncRNA_exonic
CAediting_213034	chr2_130374407_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_212808	chr2_130360855_+	SINE	Alu	AluSc8
CAediting_212809	chr2_130360887_+	SINE	Alu	AluSc8
CAediting_212810	chr2_130360895_+	SINE	Alu	AluSc8
CAediting_212811	chr2_130360896_+	SINE	Alu	AluSc8
CAediting_212812	chr2_130360926_+	SINE	Alu	AluSc8
CAediting_212813	chr2_130360931_+	SINE	Alu	AluSc8
CAediting_212814	chr2_130360935_+	SINE	Alu	AluSc8
CAediting_212815	chr2_130360958_+	SINE	Alu	AluSc8
CAediting_212816	chr2_130360961_+	SINE	Alu	AluSc8
CAediting_212817	chr2_130360965_+	SINE	Alu	AluSc8
CAediting_212818	chr2_130360971_+	SINE	Alu	AluSc8
CAediting_212819	chr2_130360977_+	SINE	Alu	AluSc8
CAediting_212820	chr2_130361608_+	SINE	Alu	AluSq2
CAediting_212821	chr2_130361638_+	SINE	Alu	AluSq2
CAediting_212822	chr2_130361643_+	SINE	Alu	AluSq2
CAediting_212823	chr2_130361644_+	SINE	Alu	AluSq2
CAediting_212824	chr2_130361652_+	SINE	Alu	AluSq2
CAediting_212825	chr2_130361681_+	SINE	Alu	AluSq2
CAediting_212826	chr2_130361688_+	SINE	Alu	AluSq2
CAediting_212827	chr2_130361717_+	SINE	Alu	AluSq2
CAediting_212828	chr2_130361762_+	SINE	Alu	AluSq2
CAediting_212829	chr2_130361768_+	SINE	Alu	AluSq2
CAediting_212830	chr2_130361785_+	SINE	Alu	AluSq2
CAediting_212831	chr2_130361808_+	SINE	Alu	AluSq2
CAediting_212832	chr2_130361810_+	SINE	Alu	AluSq2
CAediting_212833	chr2_130361840_+	SINE	Alu	AluSq2
CAediting_212834	chr2_130361849_+	SINE	Alu	AluSq2
CAediting_212835	chr2_130361850_+	SINE	Alu	AluSq2
CAediting_212836	chr2_130361857_+	SINE	Alu	AluSq2
CAediting_212837	chr2_130361862_+	SINE	Alu	AluSq2
CAediting_212838	chr2_130362019_+	SINE	Alu	AluJr4
CAediting_212839	chr2_130362023_+	SINE	Alu	AluJr4
CAediting_212840	chr2_130362042_+	SINE	Alu	AluJr4
CAediting_212841	chr2_130362080_+	SINE	Alu	AluJr4
CAediting_212842	chr2_130362098_+	SINE	Alu	AluJr4
CAediting_212843	chr2_130362108_+	SINE	Alu	AluJr4
CAediting_212844	chr2_130362156_+	SINE	Alu	AluJr4
CAediting_212845	chr2_130362161_+	SINE	Alu	AluJr4
CAediting_212846	chr2_130362162_+	SINE	Alu	AluJr4
CAediting_212847	chr2_130362168_+	SINE	Alu	AluJr4
CAediting_212848	chr2_130362172_+	SINE	Alu	AluJr4
CAediting_212849	chr2_130362174_+	SINE	Alu	AluJr4
CAediting_212850	chr2_130362175_+	SINE	Alu	AluJr4
CAediting_212851	chr2_130362179_+	SINE	Alu	AluJr4
CAediting_212852	chr2_130362192_+	SINE	Alu	AluJr4
CAediting_212853	chr2_130362204_+	SINE	Alu	AluJr4
CAediting_212854	chr2_130362205_+	SINE	Alu	AluJr4
CAediting_212855	chr2_130362217_+	SINE	Alu	AluJr4
CAediting_212856	chr2_130362230_+	SINE	Alu	AluJr4
CAediting_212857	chr2_130362232_+	SINE	Alu	AluJr4
CAediting_212858	chr2_130362241_+	SINE	Alu	AluJr4
CAediting_212859	chr2_130362244_+	SINE	Alu	AluJr4
CAediting_212860	chr2_130362246_+	SINE	Alu	AluJr4
CAediting_212861	chr2_130362253_+	SINE	Alu	AluJr4
CAediting_212862	chr2_130362262_+	SINE	Alu	AluJr4
CAediting_212863	chr2_130362266_+	SINE	Alu	AluJr4
CAediting_212864	chr2_130362839_+	SINE	Alu	AluY
CAediting_212865	chr2_130362841_+	SINE	Alu	AluY
CAediting_212866	chr2_130362870_+	SINE	Alu	AluY
CAediting_212867	chr2_130362875_+	SINE	Alu	AluY
CAediting_212868	chr2_130362889_+	SINE	Alu	AluY
CAediting_212869	chr2_130362899_+	SINE	Alu	AluY
CAediting_212870	chr2_130362919_+	SINE	Alu	AluY
CAediting_212871	chr2_130362949_+	SINE	Alu	AluY
CAediting_212872	chr2_130362956_+	SINE	Alu	AluY
CAediting_212873	chr2_130363081_+	SINE	Alu	AluY
CAediting_212874	chr2_130363093_+	SINE	Alu	AluY
CAediting_212875	chr2_130363102_+	SINE	Alu	AluY
CAediting_212876	chr2_130363171_+	SINE	Alu	AluSc5
CAediting_212877	chr2_130363185_+	SINE	Alu	AluSc5
CAediting_212878	chr2_130363193_+	SINE	Alu	AluSc5
CAediting_212879	chr2_130363194_+	SINE	Alu	AluSc5
CAediting_212880	chr2_130363199_+	SINE	Alu	AluSc5
CAediting_212881	chr2_130363210_+	SINE	Alu	AluSc5
CAediting_212882	chr2_130363229_+	SINE	Alu	AluSc5
CAediting_212883	chr2_130363232_+	SINE	Alu	AluSc5
CAediting_212884	chr2_130363237_+	SINE	Alu	AluSc5
CAediting_212885	chr2_130363242_+	SINE	Alu	AluSc5
CAediting_212886	chr2_130363246_+	SINE	Alu	AluSc5
CAediting_212887	chr2_130363248_+	SINE	Alu	AluSc5
CAediting_212888	chr2_130363251_+	SINE	Alu	AluSc5
CAediting_212889	chr2_130363260_+	SINE	Alu	AluSc5
CAediting_212890	chr2_130363261_+	SINE	Alu	AluSc5
CAediting_212891	chr2_130363265_+	SINE	Alu	AluSc5
CAediting_212892	chr2_130363269_+	SINE	Alu	AluSc5
CAediting_212893	chr2_130363270_+	SINE	Alu	AluSc5
CAediting_212894	chr2_130363271_+	SINE	Alu	AluSc5
CAediting_212895	chr2_130363282_+	SINE	Alu	AluSc5
CAediting_212896	chr2_130363285_+	SINE	Alu	AluSc5
CAediting_212897	chr2_130363286_+	SINE	Alu	AluSc5
CAediting_212898	chr2_130363289_+	SINE	Alu	AluSc5
CAediting_212899	chr2_130363291_+	SINE	Alu	AluSc5
CAediting_212900	chr2_130363300_+	SINE	Alu	AluSc5
CAediting_212901	chr2_130363326_+	SINE	Alu	AluSc5
CAediting_212902	chr2_130363327_+	SINE	Alu	AluSc5
CAediting_212903	chr2_130363332_+	SINE	Alu	AluSc5
CAediting_212904	chr2_130363335_+	SINE	Alu	AluSc5
CAediting_212905	chr2_130363336_+	SINE	Alu	AluSc5
CAediting_212906	chr2_130363343_+	SINE	Alu	AluSc5
CAediting_212907	chr2_130363349_+	SINE	Alu	AluSc5
CAediting_212908	chr2_130363353_+	SINE	Alu	AluSc5
CAediting_212909	chr2_130363355_+	SINE	Alu	AluSc5
CAediting_212910	chr2_130363356_+	SINE	Alu	AluSc5
CAediting_212911	chr2_130363359_+	SINE	Alu	AluSc5
CAediting_212912	chr2_130363367_+	SINE	Alu	AluSc5
CAediting_212913	chr2_130363368_+	SINE	Alu	AluSc5
CAediting_212914	chr2_130363375_+	SINE	Alu	AluSc5
CAediting_212915	chr2_130363381_+	SINE	Alu	AluSc5
CAediting_212916	chr2_130363392_+	SINE	Alu	AluSc5
CAediting_212917	chr2_130363397_+	SINE	Alu	AluSc5
CAediting_212918	chr2_130363399_+	SINE	Alu	AluSc5
CAediting_212919	chr2_130363407_+	SINE	Alu	AluSc5
CAediting_212920	chr2_130363410_+	SINE	Alu	AluSc5
CAediting_212921	chr2_130363412_+	SINE	Alu	AluSc5
CAediting_212922	chr2_130363426_+	SINE	Alu	AluSc5
CAediting_212923	chr2_130363430_+	SINE	Alu	AluSc5
CAediting_212924	chr2_130363433_+	SINE	Alu	AluSc5
CAediting_212925	chr2_130363434_+	SINE	Alu	AluSc5
CAediting_212926	chr2_130363456_+	SINE	Alu	AluSc5
CAediting_212927	chr2_130363462_+	SINE	Alu	AluSc5
CAediting_212928	chr2_130364523_+	SINE	Alu	AluY
CAediting_212929	chr2_130364525_+	SINE	Alu	AluY
CAediting_212930	chr2_130364533_+	SINE	Alu	AluY
CAediting_212931	chr2_130364541_+	SINE	Alu	AluY
CAediting_212932	chr2_130364542_+	SINE	Alu	AluY
CAediting_212933	chr2_130364547_+	SINE	Alu	AluY
CAediting_212934	chr2_130364565_+	SINE	Alu	AluY
CAediting_212935	chr2_130364568_+	SINE	Alu	AluY
CAediting_212936	chr2_130364572_+	SINE	Alu	AluY
CAediting_212937	chr2_130364574_+	SINE	Alu	AluY
CAediting_212938	chr2_130364580_+	SINE	Alu	AluY
CAediting_212939	chr2_130364585_+	SINE	Alu	AluY
CAediting_212940	chr2_130364594_+	SINE	Alu	AluY
CAediting_212941	chr2_130364609_+	SINE	Alu	AluY
CAediting_212942	chr2_130364611_+	SINE	Alu	AluY
CAediting_212943	chr2_130364614_+	SINE	Alu	AluY
CAediting_212944	chr2_130364617_+	SINE	Alu	AluY
CAediting_212945	chr2_130364618_+	SINE	Alu	AluY
CAediting_212946	chr2_130364633_+	SINE	Alu	AluY
CAediting_212947	chr2_130364634_+	SINE	Alu	AluY
CAediting_212948	chr2_130364636_+	SINE	Alu	AluY
CAediting_212949	chr2_130364637_+	SINE	Alu	AluY
CAediting_212950	chr2_130364639_+	SINE	Alu	AluY
CAediting_212951	chr2_130364642_+	SINE	Alu	AluY
CAediting_212952	chr2_130364643_+	SINE	Alu	AluY
CAediting_212953	chr2_130364644_+	SINE	Alu	AluY
CAediting_212954	chr2_130364645_+	SINE	Alu	AluY
CAediting_212955	chr2_130364649_+	SINE	Alu	AluY
CAediting_212956	chr2_130364675_+	SINE	Alu	AluY
CAediting_212957	chr2_130364681_+	SINE	Alu	AluY
CAediting_212958	chr2_130364685_+	SINE	Alu	AluY
CAediting_212959	chr2_130364702_+	SINE	Alu	AluY
CAediting_212960	chr2_130364753_+	SINE	Alu	AluY
CAediting_212961	chr2_130364778_+	SINE	Alu	AluY
CAediting_212962	chr2_130364784_+	SINE	Alu	AluY
CAediting_212963	chr2_130366856_+	SINE	Alu	AluJr
CAediting_212964	chr2_130366903_+	SINE	Alu	AluJr
CAediting_212965	chr2_130366909_+	SINE	Alu	AluJr
CAediting_212966	chr2_130366910_+	SINE	Alu	AluJr
CAediting_212967	chr2_130366923_+	SINE	Alu	AluJr
CAediting_212968	chr2_130366924_+	SINE	Alu	AluJr
CAediting_212969	chr2_130366927_+	SINE	Alu	AluJr
CAediting_212970	chr2_130366928_+	SINE	Alu	AluJr
CAediting_212971	chr2_130366936_+	SINE	Alu	AluJr
CAediting_212972	chr2_130366941_+	SINE	Alu	AluJr
CAediting_212973	chr2_130366949_+	SINE	Alu	AluJr
CAediting_212974	chr2_130366950_+	SINE	Alu	AluJr
CAediting_212975	chr2_130366963_+	SINE	Alu	AluJr
CAediting_212976	chr2_130367079_+	SINE	Alu	AluJr
CAediting_212977	chr2_130367080_+	SINE	Alu	AluJr
CAediting_212978	chr2_130367100_+	SINE	Alu	AluJr
CAediting_212979	chr2_130367123_+	SINE	Alu	AluJr
CAediting_212980	chr2_130367126_+	SINE	Alu	AluJr
CAediting_212981	chr2_130367127_+	SINE	Alu	AluJr
CAediting_212982	chr2_130367140_+	SINE	Alu	AluJr
CAediting_212983	chr2_130367148_+	SINE	Alu	AluJr
CAediting_212984	chr2_130367418_+	SINE	Alu	AluSz
CAediting_212985	chr2_130367419_+	SINE	Alu	AluSz
CAediting_212986	chr2_130367424_+	SINE	Alu	AluSz
CAediting_212987	chr2_130367440_+	SINE	Alu	AluSz
CAediting_212988	chr2_130367441_+	SINE	Alu	AluSz
CAediting_212989	chr2_130367445_+	SINE	Alu	AluSz
CAediting_212990	chr2_130367454_+	SINE	Alu	AluSz
CAediting_212991	chr2_130367459_+	SINE	Alu	AluSz
CAediting_212992	chr2_130367473_+	SINE	Alu	AluSz
CAediting_212993	chr2_130367478_+	SINE	Alu	AluSz
CAediting_212994	chr2_130367488_+	SINE	Alu	AluSz
CAediting_212995	chr2_130367496_+	SINE	Alu	AluSz
CAediting_212996	chr2_130367497_+	SINE	Alu	AluSz
CAediting_212997	chr2_130367498_+	SINE	Alu	AluSz
CAediting_212998	chr2_130367509_+	SINE	Alu	AluSz
CAediting_212999	chr2_130367512_+	SINE	Alu	AluSz
CAediting_213000	chr2_130367513_+	SINE	Alu	AluSz
CAediting_213001	chr2_130367514_+	SINE	Alu	AluSz
CAediting_213002	chr2_130367515_+	SINE	Alu	AluSz
CAediting_213003	chr2_130367521_+	SINE	Alu	AluSz
CAediting_213004	chr2_130367522_+	SINE	Alu	AluSz
CAediting_213005	chr2_130367523_+	SINE	Alu	AluSz
CAediting_213006	chr2_130367535_+	SINE	Alu	AluSz
CAediting_213007	chr2_130367553_+	SINE	Alu	AluSz
CAediting_213008	chr2_130367554_+	SINE	Alu	AluSz
CAediting_213009	chr2_130367559_+	SINE	Alu	AluSz
CAediting_213010	chr2_130367563_+	SINE	Alu	AluSz
CAediting_213011	chr2_130367567_+	SINE	Alu	AluSz
CAediting_213012	chr2_130367576_+	SINE	Alu	AluSz
CAediting_213013	chr2_130367580_+	SINE	Alu	AluSz
CAediting_213014	chr2_130367594_+	SINE	Alu	AluSz
CAediting_213015	chr2_130367595_+	SINE	Alu	AluSz
CAediting_213016	chr2_130367619_+	SINE	Alu	AluSz
CAediting_213017	chr2_130367634_+	SINE	Alu	AluSz
CAediting_213018	chr2_130367657_+	SINE	Alu	AluSz
CAediting_213019	chr2_130367662_+	SINE	Alu	AluSz
CAediting_213020	chr2_130371694_+	SINE	Alu	AluSz
CAediting_213021	chr2_130371695_+	SINE	Alu	AluSz
CAediting_213022	chr2_130371704_+	SINE	Alu	AluSz
CAediting_213023	chr2_130371717_+	SINE	Alu	AluSz
CAediting_213024	chr2_130371721_+	SINE	Alu	AluSz
CAediting_213025	chr2_130371724_+	SINE	Alu	AluSz
CAediting_213026	chr2_130371726_+	SINE	Alu	AluSz
CAediting_213027	chr2_130371756_+	SINE	Alu	AluSz
CAediting_213028	chr2_130371765_+	SINE	Alu	AluSz
CAediting_213029	chr2_130371772_+	SINE	Alu	AluSz
CAediting_213030	chr2_130374350_+	SINE	Alu	AluJr
CAediting_213031	chr2_130374351_+	SINE	Alu	AluJr
CAediting_213032	chr2_130374354_+	SINE	Alu	AluJr
CAediting_213033	chr2_130374368_+	SINE	Alu	AluJr
CAediting_213034	chr2_130374407_+	SINE	Alu	AluJr

Top

RNA A-to-I editing events in the alternative splicing sites for PTPN18

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_212844	chr2_130362156_+	130362135:130362157	3SS	2+0i	ATTGTTTTTTATTTCTTGTAGAG	-15.38	ATTGTTTTTTATTTCTTGTAGGG	-20.69
IR	CAediting_212844	chr2_130362156_+	130362135:130362157	3SS	2+0i	ATTGTTTTTTATTTCTTGTAGAG	-15.38	ATTGTTTTTTATTTCTTGTAGGG	-20.69
MEX_2	CAediting_212844	chr2_130362156_+	130362135:130362157	3SS	2+0i	ATTGTTTTTTATTTCTTGTAGAG	-15.38	ATTGTTTTTTATTTCTTGTAGGG	-20.69
MEX_1	CAediting_212844	chr2_130362156_+	130362135:130362157	3SS	2+0i	ATTGTTTTTTATTTCTTGTAGAG	-15.38	ATTGTTTTTTATTTCTTGTAGGG	-20.69
ES	CAediting_212976	chr2_130367079_+	130367061:130367083	3SS	0+2i	TTTTTTTTTTTTTTTTTTAAGAT	4.84	TTTTTTTTTTTTTTTTTTGAGAT	-3.12
ES	CAediting_212976	chr2_130367079_+	130367067:130367089	3SS	0+8i	TTTTTTTTTTTTAAGATACAGGC	-16.54	TTTTTTTTTTTTGAGATACAGGC	-16.59
MEX_2	CAediting_212976	chr2_130367079_+	130367061:130367083	3SS	0+2i	TTTTTTTTTTTTTTTTTTAAGAT	4.84	TTTTTTTTTTTTTTTTTTGAGAT	-3.12
MEX_2	CAediting_212976	chr2_130367079_+	130367067:130367089	3SS	0+8i	TTTTTTTTTTTTAAGATACAGGC	-16.54	TTTTTTTTTTTTGAGATACAGGC	-16.59
MEX_1	CAediting_212976	chr2_130367079_+	130367061:130367083	3SS	0+2i	TTTTTTTTTTTTTTTTTTAAGAT	4.84	TTTTTTTTTTTTTTTTTTGAGAT	-3.12
MEX_1	CAediting_212976	chr2_130367079_+	130367067:130367089	3SS	0+8i	TTTTTTTTTTTTAAGATACAGGC	-16.54	TTTTTTTTTTTTGAGATACAGGC	-16.59
ES	CAediting_212977	chr2_130367080_+	130367061:130367083	3SS	0+1i	TTTTTTTTTTTTTTTTTTAAGAT	4.84	TTTTTTTTTTTTTTTTTTAGGAT	13.59
ES	CAediting_212977	chr2_130367080_+	130367067:130367089	3SS	0+7i	TTTTTTTTTTTTAAGATACAGGC	-16.54	TTTTTTTTTTTTAGGATACAGGC	-18.55
MEX_2	CAediting_212977	chr2_130367080_+	130367061:130367083	3SS	0+1i	TTTTTTTTTTTTTTTTTTAAGAT	4.84	TTTTTTTTTTTTTTTTTTAGGAT	13.59
MEX_2	CAediting_212977	chr2_130367080_+	130367067:130367089	3SS	0+7i	TTTTTTTTTTTTAAGATACAGGC	-16.54	TTTTTTTTTTTTAGGATACAGGC	-18.55
MEX_1	CAediting_212977	chr2_130367080_+	130367061:130367083	3SS	0+1i	TTTTTTTTTTTTTTTTTTAAGAT	4.84	TTTTTTTTTTTTTTTTTTAGGAT	13.59
MEX_1	CAediting_212977	chr2_130367080_+	130367067:130367089	3SS	0+7i	TTTTTTTTTTTTAAGATACAGGC	-16.54	TTTTTTTTTTTTAGGATACAGGC	-18.55

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000072135.11.PTPN18.

Correlation between RNA A-to-I editing and PSI for ENSG00000072135.11.PTPN18.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PTPN18

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for PTPN18

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for PTPN18

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_213030	chr2_130374350_+	ENSG00000072135.11	ENST00000347849	hsa-miR-371b-5p	130374345	130374352	8mer-1a	130374331	130374352	148.00	-7.79
CAediting_213030	chr2_130374350_+	ENSG00000072135.11	ENST00000347849	hsa-miR-373-5p	130374345	130374352	8mer-1a	130374331	130374352	144.00	-8.35
CAediting_213030	chr2_130374350_+	ENSG00000072135.11	ENST00000347849	hsa-miR-514b-5p	130374347	130374353	7mer-1a	130374332	130374353	146.00	-15.02
CAediting_213030	chr2_130374350_+	ENSG00000072135.11	ENST00000347849	hsa-miR-616-5p	130374345	130374352	8mer-1a	130374331	130374352	140.00	-5.71
CAediting_213033	chr2_130374368_+	ENSG00000072135.11	ENST00000347849	hsa-miR-4445-3p	130374362	130374368	7mer-m8	130374350	130374369	152.00	-18.97
CAediting_213033	chr2_130374368_+	ENSG00000072135.11	ENST00000347849	hsa-miR-548al	130374362	130374368	7mer-m8	130374348	130374369	158.00	-14.47
CAediting_213034	chr2_130374407_+	ENSG00000072135.11	ENST00000347849	hsa-miR-1288-3p	130374403	130374409	7mer-m8	130374391	130374410	144.00	-17.62
CAediting_213034	chr2_130374407_+	ENSG00000072135.11	ENST00000347849	hsa-miR-3169	130374404	130374410	7mer-m8	130374392	130374411	148.00	-16.06

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229414	chr17_67471546_+	ENSG00000072135.11	ENST00000347849	hsa-miR-548aa	130374380	130374386	7mer-m8	130374363	130374387	140	-10.3
CAediting_396018	chr5_1062918_-	ENSG00000072135.11	ENST00000347849	hsa-miR-4635	130374397	130374403	7mer-m8	130374384	130374404	146	-12.42
CAediting_1160181	chr17_7017644_-	ENSG00000072135.11	ENST00000428843	hsa-miR-195-3p	130359418	130359423	6mer	130359403	130359424	140	-19.66
CAediting_396018	chr5_1062918_-	ENSG00000072135.11	ENST00000428843	hsa-miR-4635	130369805	130369811	7mer-m8	130369790	130369812	142	-15.49
CAediting_86358	chr1_109598906_+	ENSG00000072135.11	ENST00000409022	hsa-miR-197-5p	130374739	130374745	7mer-m8	130374722	130374746	155	-28.01

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PTPN18

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000175756.8	protein_coding
ENST00000347849.6	protein_coding
ENST00000420717.4	processed_transcript
ENST00000462321.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_213030	ENST00000175756.8	chr2_130374350_+	-1447.50	-1447.10	-1450.80
CAediting_213031	ENST00000175756.8	chr2_130374351_+	-1446.70	-1447.10	-1450.80
CAediting_213032	ENST00000175756.8	chr2_130374354_+	-1447.20	-1447.10	-1450.80
CAediting_213033	ENST00000175756.8	chr2_130374368_+	-1447.10	-1447.10	-1450.80
CAediting_213034	ENST00000175756.8	chr2_130374407_+	-1450.20	-1447.10	-1450.80
CAediting_213030	ENST00000347849.6	chr2_130374350_+	-947.80	-947.40	-950.20
CAediting_213031	ENST00000347849.6	chr2_130374351_+	-947.00	-947.40	-950.20
CAediting_213032	ENST00000347849.6	chr2_130374354_+	-947.50	-947.40	-950.20
CAediting_213033	ENST00000347849.6	chr2_130374368_+	-947.40	-947.40	-950.20
CAediting_213034	ENST00000347849.6	chr2_130374407_+	-950.50	-947.40	-950.20
CAediting_212844	ENST00000420717.4	chr2_130362156_+	-187.60	-188.20	-214.20
CAediting_212845	ENST00000420717.4	chr2_130362161_+	-188.20	-188.20	-214.20
CAediting_212846	ENST00000420717.4	chr2_130362162_+	-188.20	-188.20	-214.20
CAediting_212847	ENST00000420717.4	chr2_130362168_+	-188.20	-188.20	-214.20
CAediting_212848	ENST00000420717.4	chr2_130362172_+	-189.00	-188.20	-214.20
CAediting_212849	ENST00000420717.4	chr2_130362174_+	-188.20	-188.20	-214.20
CAediting_212850	ENST00000420717.4	chr2_130362175_+	-189.60	-188.20	-214.20
CAediting_212851	ENST00000420717.4	chr2_130362179_+	-186.80	-188.20	-214.20
CAediting_212852	ENST00000420717.4	chr2_130362192_+	-189.50	-188.20	-214.20
CAediting_212853	ENST00000420717.4	chr2_130362204_+	-188.80	-188.20	-214.20
CAediting_212854	ENST00000420717.4	chr2_130362205_+	-192.90	-188.20	-214.20
CAediting_212855	ENST00000420717.4	chr2_130362217_+	-190.50	-188.20	-214.20
CAediting_212856	ENST00000420717.4	chr2_130362230_+	-190.10	-188.20	-214.20
CAediting_212857	ENST00000420717.4	chr2_130362232_+	-190.70	-188.20	-214.20
CAediting_212858	ENST00000420717.4	chr2_130362241_+	-188.80	-188.20	-214.20
CAediting_212859	ENST00000420717.4	chr2_130362244_+	-190.10	-188.20	-214.20
CAediting_212860	ENST00000420717.4	chr2_130362246_+	-188.20	-188.20	-214.20
CAediting_212861	ENST00000420717.4	chr2_130362253_+	-187.30	-188.20	-214.20
CAediting_212862	ENST00000420717.4	chr2_130362262_+	-188.60	-188.20	-214.20
CAediting_212863	ENST00000420717.4	chr2_130362266_+	-187.60	-188.20	-214.20
CAediting_213030	ENST00000462321.1	chr2_130374350_+	-612.10	-611.70	-615.90
CAediting_213031	ENST00000462321.1	chr2_130374351_+	-611.30	-611.70	-615.90
CAediting_213032	ENST00000462321.1	chr2_130374354_+	-611.80	-611.70	-615.90
CAediting_213033	ENST00000462321.1	chr2_130374368_+	-611.70	-611.70	-615.90
CAediting_213034	ENST00000462321.1	chr2_130374407_+	-614.80	-611.70	-615.90

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Relation with ADAR for PTPN18

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_212847	chr2_130362168_+	.	.	0.038836752938779	0.290221708757559	.	.
BRCA	CAediting_212848	chr2_130362172_+	0.00449758871248285	0.183552237412104	.	.	.	.
PRAD	CAediting_212848	chr2_130362172_+	.	.	.	.	0.00130271227513788	0.387597185971657
BRCA	CAediting_212851	chr2_130362179_+	.	.	.	.	0.0322848607552429	0.131068089494329
LUAD	CAediting_212851	chr2_130362179_+	0.0190571749723286	0.253864883424136	.	.	0.0377880392068938	0.2257237777471
SKCM	CAediting_212851	chr2_130362179_+	.	.	0.0267417178662162	0.274788957708394	.	.
BRCA	CAediting_212857	chr2_130362232_+	0.000410418870437945	0.225826292509743	.	.	.	.
BRCA	CAediting_212859	chr2_130362244_+	0.00141215542991231	0.25668465968137	.	.	.	.
STAD	CAediting_212920	chr2_130363410_+	0.0432208345854188	0.144934140133457	.	.	.	.
OV	CAediting_212920	chr2_130363410_+	0.0187877801768297	0.213359339410374	.	.	.	.
STAD	CAediting_212924	chr2_130363433_+	0.0212146584187469	0.315879390073613	.	.	.	.
BRCA	CAediting_212969	chr2_130366927_+	0.0207910194507307	0.258128181376337	.	.	.	.
BRCA	CAediting_213011	chr2_130367567_+	0.00769558305949217	0.307506035148196	.	.	.	.
STAD	CAediting_213012	chr2_130367576_+	.	.	.	.	0.0156019532497509	0.340302590838331

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Relation with cancer stages for PTPN18

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_213014	chr2_130367594_+	0.0263533591057988	0.282049216751195
STAD	pathologic_stage	CAediting_212848	chr2_130362172_+	0.045545886441313	0.199444222022566

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Relation with survival for PTPN18

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BRCA	CAediting_212969	chr2_130366927_+	0.0136169171622447	0.0436236	1439.37
LUSC	CAediting_212851	chr2_130362179_+	0.0187118782186848	0.0107697	0.00581803
STAD	CAediting_213014	chr2_130367594_+	0.0142895997988577	0.0484924	19.7496

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RelatedDrugs for PTPN18

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for PTPN18

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
PTPN18	C0023893	Liver Cirrhosis, Experimental	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene