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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: GNL3 (CAeditome ID:26354) |
Gene summary for GNL3 |
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Gene information | Gene symbol | GNL3 | Gene ID | 26354 |
Gene name | G protein nucleolar 3 | |
Synonyms | C77032|E2IG3|NNP47|NS | |
Cytomap | 3p21.1 | |
Type of gene | protein-coding | |
Description | guanine nucleotide-binding protein-like 3E2-induced gene 3 proteinestradiol-induced nucleotide binding proteinguanine nucleotide binding protein-like 3 (nucleolar)novel nucleolar protein 47nucleolar GTP-binding protein 3nucleostemin | |
Modification date | 20210518 | |
UniProtAcc | Q9BVP2 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
GNL3 | GO:0048027 | Guanine nucleotide-binding protein-like 3 | 16213212 |
GNL3 | GO:0017145 | Guanine nucleotide-binding protein-like 3 | 25522312 |
GNL3 | GO:0005694 | Guanine nucleotide-binding protein-like 3 | 0000052 |
GNL3 | GO:0005730 | Guanine nucleotide-binding protein-like 3 | 0000052 |
GNL3 | GO:0005730 | Guanine nucleotide-binding protein-like 3 | 22641345 |
GNL3 | GO:0016604 | Guanine nucleotide-binding protein-like 3 | 0000052 |
GNL3 | GO:0030496 | Guanine nucleotide-binding protein-like 3 | 0000052 |
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RNA A-to-I events for GNL3 |
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CAediting_285213(52687719, +), CAediting_285214(52689310, +), CAediting_285215(52689721, +), CAediting_285216(52689738, +), CAediting_285217(52689755, +), CAediting_285218(52689766, +), CAediting_285219(52689767, +), CAediting_285220(52689769, +), CAediting_285221(52689777, +), CAediting_285222(52689782, +), CAediting_285223(52689788, +), CAediting_285224(52689792, +), CAediting_285225(52689796, +), CAediting_285226(52689799, +), CAediting_285227(52689813, +), CAediting_285228(52689825, +), CAediting_285229(52689831, +), CAediting_285230(52689841, +), CAediting_285231(52689848, +), CAediting_285232(52689858, +), CAediting_285233(52689872, +), CAediting_285234(52689873, +), CAediting_285235(52689897, +), CAediting_285236(52689934, +), CAediting_285237(52689935, +), CAediting_285238(52690282, +), CAediting_285239(52690327, +), CAediting_285240(52690332, +), CAediting_285241(52690337, +), CAediting_285242(52690343, +), CAediting_285243(52690392, +), CAediting_285244(52690402, +), CAediting_285245(52690404, +), CAediting_285246(52690424, +), CAediting_285247(52690445, +), CAediting_285248(52690448, +), CAediting_285249(52690470, +), CAediting_285250(52690474, +), CAediting_285251(52691247, +), CAediting_285252(52691279, +), CAediting_285253(52691961, +), CAediting_285254(52691963, +), CAediting_285255(52692257, +), CAediting_285256(52692445, +), CAediting_285257(52692505, +), CAediting_285258(52693475, +), CAediting_285259(52693510, +), CAediting_285260(52694277, +), |
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RNA editing positional annotations for GNL3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_285213 | chr3_52687719_+ | ncRNA_exonic |
CAediting_285214 | chr3_52689310_+ | ncRNA_exonic |
CAediting_285215 | chr3_52689721_+ | ncRNA_intronic |
CAediting_285216 | chr3_52689738_+ | ncRNA_intronic |
CAediting_285217 | chr3_52689755_+ | ncRNA_intronic |
CAediting_285218 | chr3_52689766_+ | ncRNA_intronic |
CAediting_285219 | chr3_52689767_+ | ncRNA_intronic |
CAediting_285220 | chr3_52689769_+ | ncRNA_intronic |
CAediting_285221 | chr3_52689777_+ | ncRNA_intronic |
CAediting_285222 | chr3_52689782_+ | ncRNA_intronic |
CAediting_285223 | chr3_52689788_+ | ncRNA_intronic |
CAediting_285224 | chr3_52689792_+ | ncRNA_intronic |
CAediting_285225 | chr3_52689796_+ | ncRNA_intronic |
CAediting_285226 | chr3_52689799_+ | ncRNA_intronic |
CAediting_285227 | chr3_52689813_+ | ncRNA_intronic |
CAediting_285228 | chr3_52689825_+ | ncRNA_intronic |
CAediting_285229 | chr3_52689831_+ | ncRNA_intronic |
CAediting_285230 | chr3_52689841_+ | ncRNA_intronic |
CAediting_285231 | chr3_52689848_+ | ncRNA_intronic |
CAediting_285232 | chr3_52689858_+ | ncRNA_intronic |
CAediting_285233 | chr3_52689872_+ | ncRNA_intronic |
CAediting_285234 | chr3_52689873_+ | ncRNA_intronic |
CAediting_285235 | chr3_52689897_+ | ncRNA_intronic |
CAediting_285236 | chr3_52689934_+ | ncRNA_intronic |
CAediting_285237 | chr3_52689935_+ | ncRNA_intronic |
CAediting_285238 | chr3_52690282_+ | ncRNA_intronic |
CAediting_285239 | chr3_52690327_+ | ncRNA_intronic |
CAediting_285240 | chr3_52690332_+ | ncRNA_intronic |
CAediting_285241 | chr3_52690337_+ | ncRNA_intronic |
CAediting_285242 | chr3_52690343_+ | ncRNA_intronic |
CAediting_285243 | chr3_52690392_+ | ncRNA_intronic |
CAediting_285244 | chr3_52690402_+ | ncRNA_intronic |
CAediting_285245 | chr3_52690404_+ | ncRNA_intronic |
CAediting_285246 | chr3_52690424_+ | ncRNA_intronic |
CAediting_285247 | chr3_52690445_+ | ncRNA_intronic |
CAediting_285248 | chr3_52690448_+ | ncRNA_intronic |
CAediting_285249 | chr3_52690470_+ | ncRNA_intronic |
CAediting_285250 | chr3_52690474_+ | ncRNA_intronic |
CAediting_285251 | chr3_52691247_+ | ncRNA_intronic |
CAediting_285252 | chr3_52691279_+ | ncRNA_intronic |
CAediting_285253 | chr3_52691961_+ | ncRNA_intronic |
CAediting_285254 | chr3_52691963_+ | ncRNA_intronic |
CAediting_285255 | chr3_52692257_+ | ncRNA_intronic |
CAediting_285256 | chr3_52692445_+ | ncRNA_intronic |
CAediting_285257 | chr3_52692505_+ | ncRNA_intronic |
CAediting_285258 | chr3_52693475_+ | exonic |
CAediting_285259 | chr3_52693510_+ | exonic |
CAediting_285260 | chr3_52694277_+ | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_285213 | chr3_52687719_+ | SINE | Alu | AluJb |
CAediting_285215 | chr3_52689721_+ | SINE | Alu | AluSq |
CAediting_285216 | chr3_52689738_+ | SINE | Alu | AluSq |
CAediting_285217 | chr3_52689755_+ | SINE | Alu | AluSq |
CAediting_285218 | chr3_52689766_+ | SINE | Alu | AluSq |
CAediting_285219 | chr3_52689767_+ | SINE | Alu | AluSq |
CAediting_285220 | chr3_52689769_+ | SINE | Alu | AluSq |
CAediting_285221 | chr3_52689777_+ | SINE | Alu | AluSq |
CAediting_285222 | chr3_52689782_+ | SINE | Alu | AluSq |
CAediting_285223 | chr3_52689788_+ | SINE | Alu | AluSq |
CAediting_285224 | chr3_52689792_+ | SINE | Alu | AluSq |
CAediting_285225 | chr3_52689796_+ | SINE | Alu | AluSq |
CAediting_285226 | chr3_52689799_+ | SINE | Alu | AluSq |
CAediting_285227 | chr3_52689813_+ | SINE | Alu | AluSq |
CAediting_285228 | chr3_52689825_+ | SINE | Alu | AluSq |
CAediting_285229 | chr3_52689831_+ | SINE | Alu | AluSq |
CAediting_285230 | chr3_52689841_+ | SINE | Alu | AluSq |
CAediting_285231 | chr3_52689848_+ | SINE | Alu | AluSq |
CAediting_285232 | chr3_52689858_+ | SINE | Alu | AluSq |
CAediting_285233 | chr3_52689872_+ | SINE | Alu | AluSq |
CAediting_285234 | chr3_52689873_+ | SINE | Alu | AluSq |
CAediting_285235 | chr3_52689897_+ | SINE | Alu | AluSq |
CAediting_285236 | chr3_52689934_+ | SINE | Alu | AluSq |
CAediting_285237 | chr3_52689935_+ | SINE | Alu | AluSq |
CAediting_285238 | chr3_52690282_+ | SINE | Alu | AluY |
CAediting_285239 | chr3_52690327_+ | SINE | Alu | AluY |
CAediting_285240 | chr3_52690332_+ | SINE | Alu | AluY |
CAediting_285241 | chr3_52690337_+ | SINE | Alu | AluY |
CAediting_285242 | chr3_52690343_+ | SINE | Alu | AluY |
CAediting_285243 | chr3_52690392_+ | SINE | Alu | AluY |
CAediting_285244 | chr3_52690402_+ | SINE | Alu | AluY |
CAediting_285245 | chr3_52690404_+ | SINE | Alu | AluY |
CAediting_285246 | chr3_52690424_+ | SINE | Alu | AluY |
CAediting_285247 | chr3_52690445_+ | SINE | Alu | AluY |
CAediting_285248 | chr3_52690448_+ | SINE | Alu | AluY |
CAediting_285249 | chr3_52690470_+ | SINE | Alu | AluY |
CAediting_285250 | chr3_52690474_+ | SINE | Alu | AluY |
CAediting_285253 | chr3_52691961_+ | SINE | Alu | AluSp |
CAediting_285254 | chr3_52691963_+ | SINE | Alu | AluSp |
CAediting_285255 | chr3_52692257_+ | SINE | Alu | AluSz |
CAediting_285256 | chr3_52692445_+ | SINE | Alu | AluSx1 |
CAediting_285257 | chr3_52692505_+ | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for GNL3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_285258 | chr3_52693475_+ | 52693464:52693486 | 3SS | 0+9i | TTAATGAGAGTATTGTGGTAGAC | -30.36 | TTAATGAGAGTGTTGTGGTAGAC | -29.65 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GNL3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for GNL3 |
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The effects of the RNA editing to the miRNA binding sites for GNL3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688081 | chr9_63819627_+ | ENSG00000163938.15 | ENST00000394799 | hsa-miR-4477b | 52694411 | 52694418 | 8mer-1a | 52694399 | 52694418 | 145 | -10.43 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for GNL3 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_285258 | ENST00000394799.5 | chr3_52693475_+ | -570.40 | -569.30 | -570.60 |
CAediting_285259 | ENST00000394799.5 | chr3_52693510_+ | -569.00 | -569.30 | -570.60 |
CAediting_285260 | ENST00000394799.5 | chr3_52694277_+ | -569.80 | -569.30 | -570.60 |
CAediting_285258 | ENST00000418458.4 | chr3_52693475_+ | -576.70 | -575.60 | -576.90 |
CAediting_285259 | ENST00000418458.4 | chr3_52693510_+ | -575.30 | -575.60 | -576.90 |
CAediting_285260 | ENST00000418458.4 | chr3_52694277_+ | -576.10 | -575.60 | -576.90 |
CAediting_285213 | ENST00000462550.4 | chr3_52687719_+ | -169.40 | -167.60 | -169.40 |
CAediting_285258 | ENST00000496254.4 | chr3_52693475_+ | -577.70 | -576.60 | -577.90 |
CAediting_285259 | ENST00000496254.4 | chr3_52693510_+ | -576.30 | -576.60 | -577.90 |
CAediting_285260 | ENST00000496254.4 | chr3_52694277_+ | -577.10 | -576.60 | -577.90 |
CAediting_285258 | ENST00000497356.1 | chr3_52693475_+ | -135.00 | -133.90 | -134.70 |
CAediting_285259 | ENST00000497356.1 | chr3_52693510_+ | -133.60 | -133.90 | -134.70 |
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Relation with ADAR for GNL3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LAML | CAediting_285218 | chr3_52689766_+ | 0.00723715356339443 | 0.346176245366565 | . | . | . | . |
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Relation with cancer stages for GNL3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BLCA | pathologic_stage | CAediting_285218 | chr3_52689766_+ | 0.0308575759008889 | 0.258293213728047 |
BLCA | pathologic_stage | CAediting_285219 | chr3_52689767_+ | 0.000378277861773417 | 0.399918334615768 |
BLCA | pathologic_stage | CAediting_285229 | chr3_52689831_+ | 0.00495001685427827 | 0.364170533369389 |
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Relation with survival for GNL3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for GNL3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GNL3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |