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Editing gene: GBGT1 (CAeditome ID:26301)

Gene summary for GBGT1

Gene summary

Gene information	Gene symbol	GBGT1
	Gene ID	26301
	Gene name	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
	Synonyms	A3GALNT\|FS\|UNQ2513
	Cytomap	9q34.2
	Type of gene	protein-coding
	Description	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1Forssman blood groupForssman glycolipid synthetase (FS)forssman glycolipid synthase-like protein
	Modification date	20210518
	UniProtAcc	Q8N5D6
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for GBGT1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000148288.10

RNA A-to-I editing events in Cancer.

CAediting_721470(133156405, -), CAediting_721471(133156621, -), CAediting_721472(133156782, -), CAediting_721473(133156809, -), CAediting_721474(133156810, -), CAediting_721475(133156826, -), CAediting_721476(133156827, -), CAediting_721477(133156828, -), CAediting_721478(133156854, -), CAediting_721479(133156855, -), CAediting_721480(133156858, -), CAediting_721481(133156872, -), CAediting_721482(133157111, -), CAediting_721483(133157118, -), CAediting_721484(133157136, -), CAediting_721485(133157149, -), CAediting_721486(133157172, -), CAediting_721487(133157175, -), CAediting_721488(133157176, -), CAediting_721489(133157224, -), CAediting_721490(133157243, -), CAediting_721491(133157903, -), CAediting_721492(133157904, -), CAediting_721493(133157925, -), CAediting_721494(133158036, -), CAediting_721495(133158037, -), CAediting_721496(133158220, -), CAediting_721497(133158262, -), CAediting_721498(133158301, -), CAediting_721499(133158308, -), CAediting_721500(133158314, -), CAediting_721501(133158316, -), CAediting_721502(133158317, -), CAediting_721503(133158346, -), CAediting_721504(133158355, -), CAediting_721505(133158362, -), CAediting_721506(133158363, -), CAediting_721507(133158371, -), CAediting_721508(133158376, -), CAediting_721509(133158403, -), CAediting_721510(133158411, -), CAediting_721511(133158423, -), CAediting_721512(133158503, -), CAediting_721513(133158539, -), CAediting_721514(133158548, -), CAediting_721515(133158579, -), CAediting_721516(133159013, -), CAediting_721517(133159021, -), CAediting_721518(133159023, -), CAediting_721519(133159026, -), CAediting_721520(133159028, -), CAediting_721521(133159029, -), CAediting_721522(133159039, -), CAediting_721523(133159044, -), CAediting_721524(133159063, -), CAediting_721525(133159099, -), CAediting_721526(133159128, -), CAediting_721527(133159134, -), CAediting_721528(133159136, -), CAediting_721529(133159137, -), CAediting_721530(133159142, -), CAediting_721531(133159143, -), CAediting_721532(133159149, -), CAediting_721533(133159154, -), CAediting_721534(133159155, -), CAediting_721535(133159174, -), CAediting_721536(133159179, -), CAediting_721537(133159185, -), CAediting_721538(133159193, -), CAediting_721539(133159198, -), CAediting_721540(133159217, -), CAediting_721541(133159228, -), CAediting_721542(133159233, -), CAediting_721543(133159234, -), CAediting_721544(133159525, -), CAediting_721545(133159528, -), CAediting_721546(133159619, -), CAediting_721547(133159625, -), CAediting_721548(133159673, -), CAediting_721549(133159675, -), CAediting_721550(133159681, -), CAediting_721551(133159714, -), CAediting_721552(133159735, -), CAediting_721553(133159737, -), CAediting_721554(133159740, -), CAediting_721555(133159745, -), CAediting_721556(133159791, -), CAediting_721557(133160031, -), CAediting_721558(133160033, -), CAediting_721559(133160107, -), CAediting_721560(133160110, -), CAediting_721561(133160115, -), CAediting_721562(133160120, -), CAediting_721563(133160121, -), CAediting_721564(133160124, -), CAediting_721565(133160127, -), CAediting_721566(133160133, -), CAediting_721567(133160157, -), CAediting_721568(133160179, -), CAediting_721569(133160186, -), CAediting_721570(133160192, -), CAediting_721571(133160193, -), CAediting_721572(133160196, -), CAediting_721573(133160197, -), CAediting_721574(133160210, -), CAediting_721575(133160216, -), CAediting_721576(133160217, -), CAediting_721577(133160243, -), CAediting_721578(133160246, -), CAediting_721579(133160775, -), CAediting_721580(133160793, -), CAediting_721581(133160807, -),

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RNA editing positional annotations for GBGT1 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_721569	chr9_133160186_-	nonsynonymous SNV	ENST00000372036.3	c.A203G	p.H68R	D	.	N
CAediting_721570	chr9_133160192_-	nonsynonymous SNV	ENST00000372036.3	c.A197G	p.N66S	D	.	N
CAediting_721571	chr9_133160193_-	nonsynonymous SNV	ENST00000372036.3	c.A196G	p.N66D	D	.	N
CAediting_721572	chr9_133160196_-	nonsynonymous SNV	ENST00000372036.3	c.A193G	p.S65G	D	.	D
CAediting_721574	chr9_133160210_-	nonsynonymous SNV	ENST00000372036.3	c.A179G	p.H60R	D	.	D
CAediting_721575	chr9_133160216_-	nonsynonymous SNV	ENST00000372036.3	c.A173G	p.N58S	D	.	D
CAediting_721576	chr9_133160217_-	nonsynonymous SNV	ENST00000372036.3	c.A172G	p.N58D	D	.	D
CAediting_721577	chr9_133160243_-	nonsynonymous SNV	ENST00000372036.3	c.A146G	p.Y49C	D	.	N
CAediting_721578	chr9_133160246_-	nonsynonymous SNV	ENST00000372036.3	c.A143G	p.E48G	D	.	D

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_721470	chr9_133156405_-	ncRNA_intronic
CAediting_721471	chr9_133156621_-	ncRNA_intronic
CAediting_721472	chr9_133156782_-	ncRNA_intronic
CAediting_721473	chr9_133156809_-	ncRNA_intronic
CAediting_721474	chr9_133156810_-	ncRNA_intronic
CAediting_721475	chr9_133156826_-	ncRNA_intronic
CAediting_721476	chr9_133156827_-	ncRNA_intronic
CAediting_721477	chr9_133156828_-	ncRNA_intronic
CAediting_721478	chr9_133156854_-	ncRNA_intronic
CAediting_721479	chr9_133156855_-	ncRNA_intronic
CAediting_721480	chr9_133156858_-	ncRNA_intronic
CAediting_721481	chr9_133156872_-	ncRNA_intronic
CAediting_721482	chr9_133157111_-	ncRNA_intronic
CAediting_721483	chr9_133157118_-	ncRNA_intronic
CAediting_721484	chr9_133157136_-	ncRNA_intronic
CAediting_721485	chr9_133157149_-	ncRNA_intronic
CAediting_721486	chr9_133157172_-	ncRNA_intronic
CAediting_721487	chr9_133157175_-	ncRNA_intronic
CAediting_721488	chr9_133157176_-	ncRNA_intronic
CAediting_721489	chr9_133157224_-	ncRNA_intronic
CAediting_721490	chr9_133157243_-	ncRNA_intronic
CAediting_721491	chr9_133157903_-	ncRNA_intronic
CAediting_721492	chr9_133157904_-	ncRNA_intronic
CAediting_721493	chr9_133157925_-	ncRNA_intronic
CAediting_721494	chr9_133158036_-	ncRNA_intronic
CAediting_721495	chr9_133158037_-	ncRNA_intronic
CAediting_721496	chr9_133158220_-	ncRNA_intronic
CAediting_721497	chr9_133158262_-	ncRNA_intronic
CAediting_721498	chr9_133158301_-	ncRNA_intronic
CAediting_721499	chr9_133158308_-	ncRNA_intronic
CAediting_721500	chr9_133158314_-	ncRNA_intronic
CAediting_721501	chr9_133158316_-	ncRNA_intronic
CAediting_721502	chr9_133158317_-	ncRNA_intronic
CAediting_721503	chr9_133158346_-	ncRNA_intronic
CAediting_721504	chr9_133158355_-	ncRNA_intronic
CAediting_721505	chr9_133158362_-	ncRNA_intronic
CAediting_721506	chr9_133158363_-	ncRNA_intronic
CAediting_721507	chr9_133158371_-	ncRNA_intronic
CAediting_721508	chr9_133158376_-	ncRNA_intronic
CAediting_721509	chr9_133158403_-	ncRNA_intronic
CAediting_721510	chr9_133158411_-	ncRNA_intronic
CAediting_721511	chr9_133158423_-	ncRNA_intronic
CAediting_721512	chr9_133158503_-	ncRNA_intronic
CAediting_721513	chr9_133158539_-	ncRNA_intronic
CAediting_721514	chr9_133158548_-	ncRNA_intronic
CAediting_721515	chr9_133158579_-	ncRNA_intronic
CAediting_721516	chr9_133159013_-	ncRNA_intronic
CAediting_721517	chr9_133159021_-	ncRNA_intronic
CAediting_721518	chr9_133159023_-	ncRNA_intronic
CAediting_721519	chr9_133159026_-	ncRNA_intronic
CAediting_721520	chr9_133159028_-	ncRNA_intronic
CAediting_721521	chr9_133159029_-	ncRNA_intronic
CAediting_721522	chr9_133159039_-	ncRNA_intronic
CAediting_721523	chr9_133159044_-	ncRNA_intronic
CAediting_721524	chr9_133159063_-	ncRNA_intronic
CAediting_721525	chr9_133159099_-	ncRNA_intronic
CAediting_721526	chr9_133159128_-	ncRNA_intronic
CAediting_721527	chr9_133159134_-	ncRNA_intronic
CAediting_721528	chr9_133159136_-	ncRNA_intronic
CAediting_721529	chr9_133159137_-	ncRNA_intronic
CAediting_721530	chr9_133159142_-	ncRNA_intronic
CAediting_721531	chr9_133159143_-	ncRNA_intronic
CAediting_721532	chr9_133159149_-	ncRNA_intronic
CAediting_721533	chr9_133159154_-	ncRNA_intronic
CAediting_721534	chr9_133159155_-	ncRNA_intronic
CAediting_721535	chr9_133159174_-	ncRNA_intronic
CAediting_721536	chr9_133159179_-	ncRNA_intronic
CAediting_721537	chr9_133159185_-	ncRNA_intronic
CAediting_721538	chr9_133159193_-	ncRNA_intronic
CAediting_721539	chr9_133159198_-	ncRNA_intronic
CAediting_721540	chr9_133159217_-	ncRNA_intronic
CAediting_721541	chr9_133159228_-	ncRNA_intronic
CAediting_721542	chr9_133159233_-	ncRNA_intronic
CAediting_721543	chr9_133159234_-	ncRNA_intronic
CAediting_721544	chr9_133159525_-	ncRNA_intronic
CAediting_721545	chr9_133159528_-	ncRNA_intronic
CAediting_721546	chr9_133159619_-	ncRNA_intronic
CAediting_721547	chr9_133159625_-	ncRNA_intronic
CAediting_721548	chr9_133159673_-	ncRNA_intronic
CAediting_721549	chr9_133159675_-	ncRNA_intronic
CAediting_721550	chr9_133159681_-	ncRNA_intronic
CAediting_721551	chr9_133159714_-	ncRNA_intronic
CAediting_721552	chr9_133159735_-	ncRNA_intronic
CAediting_721553	chr9_133159737_-	ncRNA_intronic
CAediting_721554	chr9_133159740_-	ncRNA_intronic
CAediting_721555	chr9_133159745_-	ncRNA_intronic
CAediting_721556	chr9_133159791_-	ncRNA_intronic
CAediting_721557	chr9_133160031_-	ncRNA_intronic
CAediting_721558	chr9_133160033_-	ncRNA_intronic
CAediting_721559	chr9_133160107_-	ncRNA_intronic
CAediting_721560	chr9_133160110_-	ncRNA_intronic
CAediting_721561	chr9_133160115_-	ncRNA_intronic
CAediting_721562	chr9_133160120_-	ncRNA_intronic
CAediting_721563	chr9_133160121_-	ncRNA_intronic
CAediting_721564	chr9_133160124_-	ncRNA_intronic
CAediting_721565	chr9_133160127_-	ncRNA_intronic
CAediting_721566	chr9_133160133_-	ncRNA_intronic
CAediting_721567	chr9_133160157_-	ncRNA_intronic
CAediting_721568	chr9_133160179_-	exonic
CAediting_721569	chr9_133160186_-	exonic
CAediting_721570	chr9_133160192_-	exonic
CAediting_721571	chr9_133160193_-	exonic
CAediting_721572	chr9_133160196_-	exonic
CAediting_721573	chr9_133160197_-	exonic
CAediting_721574	chr9_133160210_-	exonic
CAediting_721575	chr9_133160216_-	exonic
CAediting_721576	chr9_133160217_-	exonic
CAediting_721577	chr9_133160243_-	exonic
CAediting_721578	chr9_133160246_-	exonic
CAediting_721579	chr9_133160775_-	ncRNA_intronic
CAediting_721580	chr9_133160793_-	ncRNA_intronic
CAediting_721581	chr9_133160807_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_721470	chr9_133156405_-	SINE	Alu	AluSg7
CAediting_721471	chr9_133156621_-	SINE	Alu	AluSg7
CAediting_721472	chr9_133156782_-	SINE	Alu	AluJo
CAediting_721473	chr9_133156809_-	SINE	Alu	AluJo
CAediting_721474	chr9_133156810_-	SINE	Alu	AluJo
CAediting_721475	chr9_133156826_-	SINE	Alu	AluJo
CAediting_721476	chr9_133156827_-	SINE	Alu	AluJo
CAediting_721477	chr9_133156828_-	SINE	Alu	AluJo
CAediting_721478	chr9_133156854_-	SINE	Alu	AluJo
CAediting_721479	chr9_133156855_-	SINE	Alu	AluJo
CAediting_721480	chr9_133156858_-	SINE	Alu	AluJo
CAediting_721481	chr9_133156872_-	SINE	Alu	AluJo
CAediting_721482	chr9_133157111_-	SINE	Alu	AluJo
CAediting_721483	chr9_133157118_-	SINE	Alu	AluJo
CAediting_721484	chr9_133157136_-	SINE	Alu	AluJo
CAediting_721485	chr9_133157149_-	SINE	Alu	AluJo
CAediting_721486	chr9_133157172_-	SINE	Alu	AluJo
CAediting_721487	chr9_133157175_-	SINE	Alu	AluJo
CAediting_721488	chr9_133157176_-	SINE	Alu	AluJo
CAediting_721489	chr9_133157224_-	SINE	Alu	AluJo
CAediting_721490	chr9_133157243_-	SINE	Alu	AluJo
CAediting_721491	chr9_133157903_-	SINE	Alu	AluSc
CAediting_721492	chr9_133157904_-	SINE	Alu	AluSc
CAediting_721493	chr9_133157925_-	SINE	Alu	AluSc
CAediting_721494	chr9_133158036_-	SINE	Alu	AluSc
CAediting_721495	chr9_133158037_-	SINE	Alu	AluSc
CAediting_721498	chr9_133158301_-	SINE	Alu	AluJb
CAediting_721499	chr9_133158308_-	SINE	Alu	AluJb
CAediting_721500	chr9_133158314_-	SINE	Alu	AluJb
CAediting_721501	chr9_133158316_-	SINE	Alu	AluJb
CAediting_721502	chr9_133158317_-	SINE	Alu	AluJb
CAediting_721503	chr9_133158346_-	SINE	Alu	AluJb
CAediting_721504	chr9_133158355_-	SINE	Alu	AluJb
CAediting_721505	chr9_133158362_-	SINE	Alu	AluJb
CAediting_721506	chr9_133158363_-	SINE	Alu	AluJb
CAediting_721507	chr9_133158371_-	SINE	Alu	AluJb
CAediting_721508	chr9_133158376_-	SINE	Alu	AluJb
CAediting_721509	chr9_133158403_-	SINE	Alu	AluJb
CAediting_721510	chr9_133158411_-	SINE	Alu	AluJb
CAediting_721511	chr9_133158423_-	SINE	Alu	AluJb
CAediting_721512	chr9_133158503_-	SINE	Alu	AluJb
CAediting_721513	chr9_133158539_-	SINE	Alu	AluJb
CAediting_721514	chr9_133158548_-	SINE	Alu	AluJb
CAediting_721515	chr9_133158579_-	SINE	Alu	AluJb
CAediting_721516	chr9_133159013_-	SINE	Alu	AluSz
CAediting_721517	chr9_133159021_-	SINE	Alu	AluSz
CAediting_721518	chr9_133159023_-	SINE	Alu	AluSz
CAediting_721519	chr9_133159026_-	SINE	Alu	AluSz
CAediting_721520	chr9_133159028_-	SINE	Alu	AluSz
CAediting_721521	chr9_133159029_-	SINE	Alu	AluSz
CAediting_721522	chr9_133159039_-	SINE	Alu	AluSz
CAediting_721523	chr9_133159044_-	SINE	Alu	AluSz
CAediting_721524	chr9_133159063_-	SINE	Alu	AluSz
CAediting_721525	chr9_133159099_-	SINE	Alu	AluSz
CAediting_721526	chr9_133159128_-	SINE	Alu	AluSz
CAediting_721527	chr9_133159134_-	SINE	Alu	AluSz
CAediting_721528	chr9_133159136_-	SINE	Alu	AluSz
CAediting_721529	chr9_133159137_-	SINE	Alu	AluSz
CAediting_721530	chr9_133159142_-	SINE	Alu	AluSz
CAediting_721531	chr9_133159143_-	SINE	Alu	AluSz
CAediting_721532	chr9_133159149_-	SINE	Alu	AluSz
CAediting_721533	chr9_133159154_-	SINE	Alu	AluSz
CAediting_721534	chr9_133159155_-	SINE	Alu	AluSz
CAediting_721535	chr9_133159174_-	SINE	Alu	AluSz
CAediting_721536	chr9_133159179_-	SINE	Alu	AluSz
CAediting_721537	chr9_133159185_-	SINE	Alu	AluSz
CAediting_721538	chr9_133159193_-	SINE	Alu	AluSz
CAediting_721539	chr9_133159198_-	SINE	Alu	AluSz
CAediting_721540	chr9_133159217_-	SINE	Alu	AluSz
CAediting_721541	chr9_133159228_-	SINE	Alu	AluSz
CAediting_721542	chr9_133159233_-	SINE	Alu	AluSz
CAediting_721543	chr9_133159234_-	SINE	Alu	AluSz
CAediting_721544	chr9_133159525_-	SINE	Alu	AluJr
CAediting_721545	chr9_133159528_-	SINE	Alu	AluJr
CAediting_721546	chr9_133159619_-	SINE	Alu	AluJr
CAediting_721547	chr9_133159625_-	SINE	Alu	AluJr
CAediting_721548	chr9_133159673_-	SINE	Alu	AluJr
CAediting_721549	chr9_133159675_-	SINE	Alu	AluJr
CAediting_721550	chr9_133159681_-	SINE	Alu	AluJr
CAediting_721551	chr9_133159714_-	SINE	Alu	AluJr
CAediting_721552	chr9_133159735_-	SINE	Alu	AluJr
CAediting_721553	chr9_133159737_-	SINE	Alu	AluJr
CAediting_721554	chr9_133159740_-	SINE	Alu	AluJr
CAediting_721555	chr9_133159745_-	SINE	Alu	AluJr
CAediting_721556	chr9_133159791_-	SINE	Alu	AluJr
CAediting_721557	chr9_133160031_-	SINE	Alu	AluSz6
CAediting_721558	chr9_133160033_-	SINE	Alu	AluSz6
CAediting_721559	chr9_133160107_-	SINE	Alu	AluSz6
CAediting_721560	chr9_133160110_-	SINE	Alu	AluSz6
CAediting_721561	chr9_133160115_-	SINE	Alu	AluSz6
CAediting_721562	chr9_133160120_-	SINE	Alu	AluSz6
CAediting_721563	chr9_133160121_-	SINE	Alu	AluSz6
CAediting_721564	chr9_133160124_-	SINE	Alu	AluSz6
CAediting_721565	chr9_133160127_-	SINE	Alu	AluSz6
CAediting_721566	chr9_133160133_-	SINE	Alu	AluSz6
CAediting_721567	chr9_133160157_-	SINE	Alu	AluSz6
CAediting_721568	chr9_133160179_-	SINE	Alu	AluSz6
CAediting_721569	chr9_133160186_-	SINE	Alu	AluSz6
CAediting_721570	chr9_133160192_-	SINE	Alu	AluSz6
CAediting_721571	chr9_133160193_-	SINE	Alu	AluSz6
CAediting_721572	chr9_133160196_-	SINE	Alu	AluSz6
CAediting_721573	chr9_133160197_-	SINE	Alu	AluSz6
CAediting_721574	chr9_133160210_-	SINE	Alu	AluSz6
CAediting_721575	chr9_133160216_-	SINE	Alu	AluSz6
CAediting_721576	chr9_133160217_-	SINE	Alu	AluSz6
CAediting_721577	chr9_133160243_-	SINE	Alu	AluSz6
CAediting_721578	chr9_133160246_-	SINE	Alu	AluSz6
CAediting_721579	chr9_133160775_-	SINE	Alu	AluSx1
CAediting_721580	chr9_133160793_-	SINE	Alu	AluSx1
CAediting_721581	chr9_133160807_-	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for GBGT1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000148288.10.GBGT1.

Correlation between RNA A-to-I editing and PSI for ENSG00000148288.10.GBGT1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GBGT1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for GBGT1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for GBGT1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000148288.10	ENST00000372043	hsa-miR-4512	133153093	133153099	7mer-m8	133153092	133153113	149	-14.38
CAediting_1351755	chr19_40282625_-	ENSG00000148288.10	ENST00000372043	hsa-miR-641	133153128	133153134	7mer-m8	133153127	133153152	151	-23.27
CAediting_573001	chr7_92204086_-	ENSG00000148288.10	ENST00000372043	hsa-miR-1285-5p	133153365	133153372	8mer-1a	133153365	133153382	158	-21.78
CAediting_580943	chr7_100356700_+	ENSG00000148288.10	ENST00000372038	hsa-miR-6840-3p	133154153	133154159	7mer-m8	133154152	133154173	160	-31.22

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GBGT1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for GBGT1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for GBGT1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for GBGT1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for GBGT1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for GBGT1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene