CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SERBP1 (CAeditome ID:26135)

Gene summary for SERBP1

check button Gene summary
Gene informationGene symbol

SERBP1

Gene ID

26135

Gene nameSERPINE1 mRNA binding protein 1
SynonymsCGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1
Cytomap

1p31.3

Type of geneprotein-coding
Descriptionplasminogen activator inhibitor 1 RNA-binding proteinPAI-1 mRNA binding proteinPAI1 RNA-binding protein 1chromodomain helicase DNA binding protein 3 interacting protein
Modification date20210518
UniProtAcc

Q8NC51

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SERBP1

GO:0003730

Plasminogen activator inhibitor 1 RNA-binding protein

11001948

SERBP1

GO:0032183

Plasminogen activator inhibitor 1 RNA-binding protein

28695742

SERBP1

GO:0043022

Plasminogen activator inhibitor 1 RNA-binding protein

23636399

SERBP1

GO:0030578

Plasminogen activator inhibitor 1 RNA-binding protein

28695742

SERBP1

GO:0005634

Plasminogen activator inhibitor 1 RNA-binding protein

16879614

SERBP1

GO:0005737

Plasminogen activator inhibitor 1 RNA-binding protein

16879614

SERBP1

GO:0005829

Plasminogen activator inhibitor 1 RNA-binding protein

0000052


Top

RNA A-to-I events for SERBP1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000142864.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_73457(67409008, -), CAediting_73458(67409011, -), CAediting_73459(67409014, -), CAediting_73460(67409018, -), CAediting_73461(67409022, -), CAediting_73462(67409035, -), CAediting_73463(67409042, -), CAediting_73464(67409043, -), CAediting_73465(67409051, -), CAediting_73466(67409052, -), CAediting_73467(67409077, -), CAediting_73468(67409112, -), CAediting_73469(67409142, -), CAediting_73470(67409145, -), CAediting_73471(67409146, -), CAediting_73472(67409159, -), CAediting_73473(67409166, -), CAediting_73474(67409171, -), CAediting_73475(67409176, -), CAediting_73476(67409195, -), CAediting_73477(67409202, -), CAediting_73478(67409206, -), CAediting_73479(67409220, -), CAediting_73480(67409222, -), CAediting_73481(67409224, -), CAediting_73482(67411106, -), CAediting_73483(67412008, -), CAediting_73484(67412054, -), CAediting_73485(67413383, -), CAediting_73486(67413404, -), CAediting_73487(67413445, -), CAediting_73488(67413446, -), CAediting_73489(67413457, -), CAediting_73490(67413469, -), CAediting_73491(67413526, -), CAediting_73492(67413528, -), CAediting_73493(67413537, -), CAediting_73494(67413562, -), CAediting_73495(67413566, -), CAediting_73496(67413567, -), CAediting_73497(67413573, -), CAediting_73498(67413586, -), CAediting_73499(67413592, -), CAediting_73500(67413603, -), CAediting_73501(67413635, -), CAediting_73502(67413815, -), CAediting_73503(67413836, -), CAediting_73504(67413837, -), CAediting_73505(67413842, -), CAediting_73506(67413848, -), CAediting_73507(67413859, -), CAediting_73508(67413864, -), CAediting_73509(67413869, -), CAediting_73510(67413878, -), CAediting_73511(67413879, -), CAediting_73512(67413883, -), CAediting_73513(67413899, -), CAediting_73514(67413903, -), CAediting_73515(67413904, -), CAediting_73516(67413922, -), CAediting_73517(67413943, -), CAediting_73518(67413944, -), CAediting_73519(67413966, -), CAediting_73520(67413970, -), CAediting_73521(67414003, -), CAediting_73522(67414006, -), CAediting_73523(67414008, -), CAediting_73524(67414013, -), CAediting_73525(67414022, -), CAediting_73526(67414032, -), CAediting_73527(67414063, -), CAediting_73528(67414071, -), CAediting_73529(67416084, -), CAediting_73530(67416089, -), CAediting_73531(67416121, -), CAediting_73532(67416263, -), CAediting_73533(67416286, -), CAediting_73534(67416294, -), CAediting_73535(67417005, -), CAediting_73536(67417019, -), CAediting_73537(67417044, -), CAediting_73538(67417049, -), CAediting_73539(67417084, -), CAediting_73540(67417093, -), CAediting_73541(67417098, -), CAediting_73542(67417110, -), CAediting_73543(67417111, -), CAediting_73544(67417125, -), CAediting_73545(67417126, -), CAediting_73546(67417132, -), CAediting_73547(67417137, -), CAediting_73548(67417142, -), CAediting_73549(67417150, -), CAediting_73550(67417153, -), CAediting_73551(67417160, -), CAediting_73552(67417540, -), CAediting_73553(67417546, -), CAediting_73554(67417557, -), CAediting_73555(67417574, -), CAediting_73556(67417578, -), CAediting_73557(67417579, -), CAediting_73558(67417587, -), CAediting_73559(67417596, -), CAediting_73560(67417603, -), CAediting_73561(67417608, -), CAediting_73562(67417613, -), CAediting_73563(67417645, -), CAediting_73564(67417657, -), CAediting_73565(67417690, -), CAediting_73566(67417709, -), CAediting_73567(67417783, -), CAediting_73568(67417784, -), CAediting_73569(67417790, -), CAediting_73570(67417792, -), CAediting_73571(67418005, -), CAediting_73572(67418011, -), CAediting_73573(67418014, -), CAediting_73574(67418036, -), CAediting_73575(67418043, -), CAediting_73576(67418052, -), CAediting_73577(67418061, -), CAediting_73578(67418068, -), CAediting_73579(67418072, -), CAediting_73580(67418073, -), CAediting_73581(67418078, -), CAediting_73582(67418104, -), CAediting_73583(67418108, -), CAediting_73584(67418113, -), CAediting_73585(67418114, -), CAediting_73586(67418140, -), CAediting_73587(67418143, -), CAediting_73588(67418145, -), CAediting_73589(67418152, -), CAediting_73590(67418153, -), CAediting_73591(67418154, -), CAediting_73592(67418168, -), CAediting_73593(67418169, -), CAediting_73594(67418172, -), CAediting_73595(67418176, -), CAediting_73596(67418178, -), CAediting_73597(67418182, -), CAediting_73598(67418194, -), CAediting_73599(67418207, -), CAediting_73600(67418229, -), CAediting_73601(67418231, -), CAediting_73602(67418248, -), CAediting_73603(67418271, -), CAediting_73604(67418485, -), CAediting_73605(67418555, -), CAediting_73606(67418556, -), CAediting_73607(67418567, -), CAediting_73608(67418586, -), CAediting_73609(67418591, -), CAediting_73610(67418593, -), CAediting_73611(67418596, -), CAediting_73612(67418611, -), CAediting_73613(67418637, -), CAediting_73614(67418659, -), CAediting_73615(67418675, -), CAediting_73616(67418712, -), CAediting_73617(67418715, -), CAediting_73618(67418725, -), CAediting_73619(67422302, -), CAediting_73620(67422383, -), CAediting_73621(67422387, -), CAediting_73622(67422680, -), CAediting_73623(67422848, -),

Top

RNA editing positional annotations for SERBP1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_73457chr1_67409008_-UTR3
CAediting_73458chr1_67409011_-UTR3
CAediting_73459chr1_67409014_-UTR3
CAediting_73460chr1_67409018_-UTR3
CAediting_73461chr1_67409022_-UTR3
CAediting_73462chr1_67409035_-UTR3
CAediting_73463chr1_67409042_-UTR3
CAediting_73464chr1_67409043_-UTR3
CAediting_73465chr1_67409051_-UTR3
CAediting_73466chr1_67409052_-UTR3
CAediting_73467chr1_67409077_-UTR3
CAediting_73468chr1_67409112_-UTR3
CAediting_73469chr1_67409142_-UTR3
CAediting_73470chr1_67409145_-UTR3
CAediting_73471chr1_67409146_-UTR3
CAediting_73472chr1_67409159_-UTR3
CAediting_73473chr1_67409166_-UTR3
CAediting_73474chr1_67409171_-UTR3
CAediting_73475chr1_67409176_-UTR3
CAediting_73476chr1_67409195_-UTR3
CAediting_73477chr1_67409202_-UTR3
CAediting_73478chr1_67409206_-UTR3
CAediting_73479chr1_67409220_-UTR3
CAediting_73480chr1_67409222_-UTR3
CAediting_73481chr1_67409224_-UTR3
CAediting_73482chr1_67411106_-UTR3
CAediting_73483chr1_67412008_-UTR3
CAediting_73484chr1_67412054_-UTR3
CAediting_73485chr1_67413383_-ncRNA_intronic
CAediting_73486chr1_67413404_-ncRNA_intronic
CAediting_73487chr1_67413445_-ncRNA_intronic
CAediting_73488chr1_67413446_-ncRNA_intronic
CAediting_73489chr1_67413457_-ncRNA_intronic
CAediting_73490chr1_67413469_-ncRNA_intronic
CAediting_73491chr1_67413526_-ncRNA_intronic
CAediting_73492chr1_67413528_-ncRNA_intronic
CAediting_73493chr1_67413537_-ncRNA_intronic
CAediting_73494chr1_67413562_-ncRNA_intronic
CAediting_73495chr1_67413566_-ncRNA_intronic
CAediting_73496chr1_67413567_-ncRNA_intronic
CAediting_73497chr1_67413573_-ncRNA_intronic
CAediting_73498chr1_67413586_-ncRNA_intronic
CAediting_73499chr1_67413592_-ncRNA_intronic
CAediting_73500chr1_67413603_-ncRNA_intronic
CAediting_73501chr1_67413635_-ncRNA_intronic
CAediting_73502chr1_67413815_-ncRNA_intronic
CAediting_73503chr1_67413836_-ncRNA_intronic
CAediting_73504chr1_67413837_-ncRNA_intronic
CAediting_73505chr1_67413842_-ncRNA_intronic
CAediting_73506chr1_67413848_-ncRNA_intronic
CAediting_73507chr1_67413859_-ncRNA_intronic
CAediting_73508chr1_67413864_-ncRNA_intronic
CAediting_73509chr1_67413869_-ncRNA_intronic
CAediting_73510chr1_67413878_-ncRNA_intronic
CAediting_73511chr1_67413879_-ncRNA_intronic
CAediting_73512chr1_67413883_-ncRNA_intronic
CAediting_73513chr1_67413899_-ncRNA_intronic
CAediting_73514chr1_67413903_-ncRNA_intronic
CAediting_73515chr1_67413904_-ncRNA_intronic
CAediting_73516chr1_67413922_-ncRNA_intronic
CAediting_73517chr1_67413943_-ncRNA_intronic
CAediting_73518chr1_67413944_-ncRNA_intronic
CAediting_73519chr1_67413966_-ncRNA_intronic
CAediting_73520chr1_67413970_-ncRNA_intronic
CAediting_73521chr1_67414003_-ncRNA_intronic
CAediting_73522chr1_67414006_-ncRNA_intronic
CAediting_73523chr1_67414008_-ncRNA_intronic
CAediting_73524chr1_67414013_-ncRNA_intronic
CAediting_73525chr1_67414022_-ncRNA_intronic
CAediting_73526chr1_67414032_-ncRNA_intronic
CAediting_73527chr1_67414063_-ncRNA_intronic
CAediting_73528chr1_67414071_-ncRNA_intronic
CAediting_73529chr1_67416084_-ncRNA_intronic
CAediting_73530chr1_67416089_-ncRNA_intronic
CAediting_73531chr1_67416121_-ncRNA_intronic
CAediting_73532chr1_67416263_-ncRNA_intronic
CAediting_73533chr1_67416286_-ncRNA_intronic
CAediting_73534chr1_67416294_-ncRNA_intronic
CAediting_73535chr1_67417005_-ncRNA_intronic
CAediting_73536chr1_67417019_-ncRNA_intronic
CAediting_73537chr1_67417044_-ncRNA_intronic
CAediting_73538chr1_67417049_-ncRNA_intronic
CAediting_73539chr1_67417084_-ncRNA_intronic
CAediting_73540chr1_67417093_-ncRNA_intronic
CAediting_73541chr1_67417098_-ncRNA_intronic
CAediting_73542chr1_67417110_-ncRNA_intronic
CAediting_73543chr1_67417111_-ncRNA_intronic
CAediting_73544chr1_67417125_-ncRNA_intronic
CAediting_73545chr1_67417126_-ncRNA_intronic
CAediting_73546chr1_67417132_-ncRNA_intronic
CAediting_73547chr1_67417137_-ncRNA_intronic
CAediting_73548chr1_67417142_-ncRNA_intronic
CAediting_73549chr1_67417150_-ncRNA_intronic
CAediting_73550chr1_67417153_-ncRNA_intronic
CAediting_73551chr1_67417160_-ncRNA_intronic
CAediting_73552chr1_67417540_-ncRNA_intronic
CAediting_73553chr1_67417546_-ncRNA_intronic
CAediting_73554chr1_67417557_-ncRNA_intronic
CAediting_73555chr1_67417574_-ncRNA_intronic
CAediting_73556chr1_67417578_-ncRNA_intronic
CAediting_73557chr1_67417579_-ncRNA_intronic
CAediting_73558chr1_67417587_-ncRNA_intronic
CAediting_73559chr1_67417596_-ncRNA_intronic
CAediting_73560chr1_67417603_-ncRNA_intronic
CAediting_73561chr1_67417608_-ncRNA_intronic
CAediting_73562chr1_67417613_-ncRNA_intronic
CAediting_73563chr1_67417645_-ncRNA_intronic
CAediting_73564chr1_67417657_-ncRNA_intronic
CAediting_73565chr1_67417690_-ncRNA_intronic
CAediting_73566chr1_67417709_-ncRNA_intronic
CAediting_73567chr1_67417783_-ncRNA_intronic
CAediting_73568chr1_67417784_-ncRNA_intronic
CAediting_73569chr1_67417790_-ncRNA_intronic
CAediting_73570chr1_67417792_-ncRNA_intronic
CAediting_73571chr1_67418005_-ncRNA_intronic
CAediting_73572chr1_67418011_-ncRNA_intronic
CAediting_73573chr1_67418014_-ncRNA_intronic
CAediting_73574chr1_67418036_-ncRNA_intronic
CAediting_73575chr1_67418043_-ncRNA_intronic
CAediting_73576chr1_67418052_-ncRNA_intronic
CAediting_73577chr1_67418061_-ncRNA_intronic
CAediting_73578chr1_67418068_-ncRNA_intronic
CAediting_73579chr1_67418072_-ncRNA_intronic
CAediting_73580chr1_67418073_-ncRNA_intronic
CAediting_73581chr1_67418078_-ncRNA_intronic
CAediting_73582chr1_67418104_-ncRNA_intronic
CAediting_73583chr1_67418108_-ncRNA_intronic
CAediting_73584chr1_67418113_-ncRNA_intronic
CAediting_73585chr1_67418114_-ncRNA_intronic
CAediting_73586chr1_67418140_-ncRNA_intronic
CAediting_73587chr1_67418143_-ncRNA_intronic
CAediting_73588chr1_67418145_-ncRNA_intronic
CAediting_73589chr1_67418152_-ncRNA_intronic
CAediting_73590chr1_67418153_-ncRNA_intronic
CAediting_73591chr1_67418154_-ncRNA_intronic
CAediting_73592chr1_67418168_-ncRNA_intronic
CAediting_73593chr1_67418169_-ncRNA_intronic
CAediting_73594chr1_67418172_-ncRNA_intronic
CAediting_73595chr1_67418176_-ncRNA_intronic
CAediting_73596chr1_67418178_-ncRNA_intronic
CAediting_73597chr1_67418182_-ncRNA_intronic
CAediting_73598chr1_67418194_-ncRNA_intronic
CAediting_73599chr1_67418207_-ncRNA_intronic
CAediting_73600chr1_67418229_-ncRNA_intronic
CAediting_73601chr1_67418231_-ncRNA_intronic
CAediting_73602chr1_67418248_-ncRNA_intronic
CAediting_73603chr1_67418271_-ncRNA_intronic
CAediting_73604chr1_67418485_-ncRNA_intronic
CAediting_73605chr1_67418555_-ncRNA_intronic
CAediting_73606chr1_67418556_-ncRNA_intronic
CAediting_73607chr1_67418567_-ncRNA_intronic
CAediting_73608chr1_67418586_-ncRNA_intronic
CAediting_73609chr1_67418591_-ncRNA_intronic
CAediting_73610chr1_67418593_-ncRNA_intronic
CAediting_73611chr1_67418596_-ncRNA_intronic
CAediting_73612chr1_67418611_-ncRNA_intronic
CAediting_73613chr1_67418637_-ncRNA_intronic
CAediting_73614chr1_67418659_-ncRNA_intronic
CAediting_73615chr1_67418675_-ncRNA_intronic
CAediting_73616chr1_67418712_-ncRNA_intronic
CAediting_73617chr1_67418715_-ncRNA_intronic
CAediting_73618chr1_67418725_-ncRNA_intronic
CAediting_73619chr1_67422302_-ncRNA_intronic
CAediting_73620chr1_67422383_-ncRNA_intronic
CAediting_73621chr1_67422387_-ncRNA_intronic
CAediting_73622chr1_67422680_-ncRNA_intronic
CAediting_73623chr1_67422848_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_73457chr1_67409008_-SINEAluAluSz6
CAediting_73458chr1_67409011_-SINEAluAluSz6
CAediting_73459chr1_67409014_-SINEAluAluSz6
CAediting_73460chr1_67409018_-SINEAluAluSz6
CAediting_73461chr1_67409022_-SINEAluAluSz6
CAediting_73462chr1_67409035_-SINEAluAluSz6
CAediting_73463chr1_67409042_-SINEAluAluSz6
CAediting_73464chr1_67409043_-SINEAluAluSz6
CAediting_73465chr1_67409051_-SINEAluAluSz6
CAediting_73466chr1_67409052_-SINEAluAluSz6
CAediting_73468chr1_67409112_-SINEAluAluSz6
CAediting_73469chr1_67409142_-SINEAluAluSz6
CAediting_73470chr1_67409145_-SINEAluAluSz6
CAediting_73471chr1_67409146_-SINEAluAluSz6
CAediting_73472chr1_67409159_-SINEAluAluSz6
CAediting_73473chr1_67409166_-SINEAluAluSz6
CAediting_73474chr1_67409171_-SINEAluAluSz6
CAediting_73475chr1_67409176_-SINEAluAluSz6
CAediting_73476chr1_67409195_-SINEAluAluSz6
CAediting_73477chr1_67409202_-SINEAluAluSz6
CAediting_73478chr1_67409206_-SINEAluAluSz6
CAediting_73479chr1_67409220_-SINEAluAluSz6
CAediting_73480chr1_67409222_-SINEAluAluSz6
CAediting_73481chr1_67409224_-SINEAluAluSz6
CAediting_73485chr1_67413383_-SINEAluAluSx1
CAediting_73486chr1_67413404_-SINEAluAluSx1
CAediting_73487chr1_67413445_-SINEAluAluSx1
CAediting_73488chr1_67413446_-SINEAluAluSx1
CAediting_73489chr1_67413457_-SINEAluAluSx1
CAediting_73490chr1_67413469_-SINEAluAluSx1
CAediting_73491chr1_67413526_-SINEAluAluSx1
CAediting_73492chr1_67413528_-SINEAluAluSx1
CAediting_73493chr1_67413537_-SINEAluAluSx1
CAediting_73494chr1_67413562_-SINEAluAluSx1
CAediting_73495chr1_67413566_-SINEAluAluSx1
CAediting_73496chr1_67413567_-SINEAluAluSx1
CAediting_73497chr1_67413573_-SINEAluAluSx1
CAediting_73498chr1_67413586_-SINEAluAluSx1
CAediting_73499chr1_67413592_-SINEAluAluSx1
CAediting_73500chr1_67413603_-SINEAluAluSx1
CAediting_73501chr1_67413635_-SINEAluAluSx1
CAediting_73502chr1_67413815_-SINEAluAluSx
CAediting_73503chr1_67413836_-SINEAluAluSx
CAediting_73504chr1_67413837_-SINEAluAluSx
CAediting_73505chr1_67413842_-SINEAluAluSx
CAediting_73506chr1_67413848_-SINEAluAluSx
CAediting_73507chr1_67413859_-SINEAluAluSx
CAediting_73508chr1_67413864_-SINEAluAluSx
CAediting_73509chr1_67413869_-SINEAluAluSx
CAediting_73510chr1_67413878_-SINEAluAluSx
CAediting_73511chr1_67413879_-SINEAluAluSx
CAediting_73512chr1_67413883_-SINEAluAluSx
CAediting_73513chr1_67413899_-SINEAluAluSx
CAediting_73514chr1_67413903_-SINEAluAluSx
CAediting_73515chr1_67413904_-SINEAluAluSx
CAediting_73516chr1_67413922_-SINEAluAluSx
CAediting_73517chr1_67413943_-SINEAluAluSx
CAediting_73518chr1_67413944_-SINEAluAluSx
CAediting_73519chr1_67413966_-SINEAluAluSx
CAediting_73520chr1_67413970_-SINEAluAluSx
CAediting_73521chr1_67414003_-SINEAluAluSx
CAediting_73522chr1_67414006_-SINEAluAluSx
CAediting_73523chr1_67414008_-SINEAluAluSx
CAediting_73524chr1_67414013_-SINEAluAluSx
CAediting_73525chr1_67414022_-SINEAluAluSx
CAediting_73526chr1_67414032_-SINEAluAluSx
CAediting_73527chr1_67414063_-SINEAluAluSx
CAediting_73528chr1_67414071_-SINEAluAluSx
CAediting_73529chr1_67416084_-SINEAluAluJb
CAediting_73530chr1_67416089_-SINEAluAluJb
CAediting_73531chr1_67416121_-SINEAluAluJb
CAediting_73532chr1_67416263_-SINEAluAluJb
CAediting_73533chr1_67416286_-SINEAluAluJb
CAediting_73534chr1_67416294_-SINEAluAluJb
CAediting_73535chr1_67417005_-SINEAluAluJb
CAediting_73536chr1_67417019_-SINEAluAluJb
CAediting_73537chr1_67417044_-SINEAluAluJb
CAediting_73538chr1_67417049_-SINEAluAluJb
CAediting_73539chr1_67417084_-SINEAluAluJb
CAediting_73540chr1_67417093_-SINEAluAluJb
CAediting_73541chr1_67417098_-SINEAluAluJb
CAediting_73542chr1_67417110_-SINEAluAluJb
CAediting_73543chr1_67417111_-SINEAluAluJb
CAediting_73544chr1_67417125_-SINEAluAluJb
CAediting_73545chr1_67417126_-SINEAluAluJb
CAediting_73546chr1_67417132_-SINEAluAluJb
CAediting_73547chr1_67417137_-SINEAluAluJb
CAediting_73548chr1_67417142_-SINEAluAluJb
CAediting_73549chr1_67417150_-SINEAluAluJb
CAediting_73550chr1_67417153_-SINEAluAluJb
CAediting_73551chr1_67417160_-SINEAluAluJb
CAediting_73552chr1_67417540_-SINEAluAluSz
CAediting_73553chr1_67417546_-SINEAluAluSz
CAediting_73554chr1_67417557_-SINEAluAluSz
CAediting_73555chr1_67417574_-SINEAluAluSz
CAediting_73556chr1_67417578_-SINEAluAluSz
CAediting_73557chr1_67417579_-SINEAluAluSz
CAediting_73558chr1_67417587_-SINEAluAluSz
CAediting_73559chr1_67417596_-SINEAluAluSz
CAediting_73560chr1_67417603_-SINEAluAluSz
CAediting_73561chr1_67417608_-SINEAluAluSz
CAediting_73562chr1_67417613_-SINEAluAluSz
CAediting_73563chr1_67417645_-SINEAluAluSz
CAediting_73564chr1_67417657_-SINEAluAluSz
CAediting_73565chr1_67417690_-SINEAluAluSz
CAediting_73566chr1_67417709_-SINEAluAluSz
CAediting_73567chr1_67417783_-SINEAluAluSz
CAediting_73568chr1_67417784_-SINEAluAluSz
CAediting_73569chr1_67417790_-SINEAluAluSz
CAediting_73570chr1_67417792_-SINEAluAluSz
CAediting_73571chr1_67418005_-SINEAluAluSx
CAediting_73572chr1_67418011_-SINEAluAluSx
CAediting_73573chr1_67418014_-SINEAluAluSx
CAediting_73574chr1_67418036_-SINEAluAluSx
CAediting_73575chr1_67418043_-SINEAluAluSx
CAediting_73576chr1_67418052_-SINEAluAluSx
CAediting_73577chr1_67418061_-SINEAluAluSx
CAediting_73578chr1_67418068_-SINEAluAluSx
CAediting_73579chr1_67418072_-SINEAluAluSx
CAediting_73580chr1_67418073_-SINEAluAluSx
CAediting_73581chr1_67418078_-SINEAluAluSx
CAediting_73582chr1_67418104_-SINEAluAluSx
CAediting_73583chr1_67418108_-SINEAluAluSx
CAediting_73584chr1_67418113_-SINEAluAluSx
CAediting_73585chr1_67418114_-SINEAluAluSx
CAediting_73586chr1_67418140_-SINEAluAluSx
CAediting_73587chr1_67418143_-SINEAluAluSx
CAediting_73588chr1_67418145_-SINEAluAluSx
CAediting_73589chr1_67418152_-SINEAluAluSx
CAediting_73590chr1_67418153_-SINEAluAluSx
CAediting_73591chr1_67418154_-SINEAluAluSx
CAediting_73592chr1_67418168_-SINEAluAluSx
CAediting_73593chr1_67418169_-SINEAluAluSx
CAediting_73594chr1_67418172_-SINEAluAluSx
CAediting_73595chr1_67418176_-SINEAluAluSx
CAediting_73596chr1_67418178_-SINEAluAluSx
CAediting_73597chr1_67418182_-SINEAluAluSx
CAediting_73598chr1_67418194_-SINEAluAluSx
CAediting_73599chr1_67418207_-SINEAluAluSx
CAediting_73600chr1_67418229_-SINEAluAluSx
CAediting_73601chr1_67418231_-SINEAluAluSx
CAediting_73602chr1_67418248_-SINEAluAluSx
CAediting_73603chr1_67418271_-SINEAluAluSx
CAediting_73604chr1_67418485_-SINEAluAluSz6
CAediting_73605chr1_67418555_-SINEAluAluSz6
CAediting_73606chr1_67418556_-SINEAluAluSz6
CAediting_73607chr1_67418567_-SINEAluAluSz6
CAediting_73608chr1_67418586_-SINEAluAluSz6
CAediting_73609chr1_67418591_-SINEAluAluSz6
CAediting_73610chr1_67418593_-SINEAluAluSz6
CAediting_73611chr1_67418596_-SINEAluAluSz6
CAediting_73612chr1_67418611_-SINEAluAluSz6
CAediting_73613chr1_67418637_-SINEAluAluSz6
CAediting_73614chr1_67418659_-SINEAluAluSz6
CAediting_73615chr1_67418675_-SINEAluAluSz6
CAediting_73616chr1_67418712_-SINEAluAluSz6
CAediting_73617chr1_67418715_-SINEAluAluSz6
CAediting_73618chr1_67418725_-SINEAluAluSz6
CAediting_73619chr1_67422302_-SINEAluAluSp
CAediting_73620chr1_67422383_-SINEAluAluSp
CAediting_73621chr1_67422387_-SINEAluAluSp
CAediting_73622chr1_67422680_-SINEAluAluSx
CAediting_73623chr1_67422848_-SINEAluAluSx

Top

RNA A-to-I editing events in the alternative splicing sites for SERBP1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000142864.13.SERBP1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000142864.13.SERBP1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for SERBP1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for SERBP1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for SERBP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_73459chr1_67409014_-ENSG00000142864.13ENST00000370994hsa-miR-4638-5p67409011674090188mer-1a6740901167409030146.00-20.28
CAediting_73460chr1_67409018_-ENSG00000142864.13ENST00000370994hsa-miR-324-3p67409018674090247mer-m86740901767409043146.00-31.42
CAediting_73463chr1_67409042_-ENSG00000142864.13ENST00000370994hsa-miR-443767409039674090457mer-m86740903867409058146.00-20.13
CAediting_73474chr1_67409171_-ENSG00000142864.13ENST00000370994hsa-miR-1301-3p67409166674091716mer6740916567409188140.00-26.00
CAediting_73474chr1_67409171_-ENSG00000142864.13ENST00000370994hsa-miR-4670-5p67409169674091757mer-m86740916867409193154.00-18.32
CAediting_73475chr1_67409176_-ENSG00000142864.13ENST00000370994hsa-miR-4740-3p67409174674091807mer-m86740917367409192149.00-24.22
CAediting_73477chr1_67409202_-ENSG00000142864.13ENST00000370994hsa-miR-3940-3p67409198674092047mer-m86740919767409219154.00-25.07
CAediting_73458chr1_67409011_-ENSG00000142864.13ENST00000370994hsa-miR-212-5p67409011674090177mer-m86740901067409029158.00-26.28
CAediting_73458chr1_67409011_-ENSG00000142864.13ENST00000370994hsa-miR-6813-3p67409010674090167mer-m86740900967409032153.00-25.22
CAediting_73462chr1_67409035_-ENSG00000142864.13ENST00000370994hsa-miR-5587-3p67409035674090417mer-m86740903467409055154.00-24.72
CAediting_73462chr1_67409035_-ENSG00000142864.13ENST00000370994hsa-miR-6840-5p67409034674090407mer-m86740903367409058147.00-25.62
CAediting_73466chr1_67409052_-ENSG00000142864.13ENST00000370994hsa-miR-362-5p67409050674090567mer-m86740904967409072145.00-20.84
CAediting_73466chr1_67409052_-ENSG00000142864.13ENST00000370994hsa-miR-500b-5p67409050674090567mer-m86740904967409066140.00-12.26
CAediting_73467chr1_67409077_-ENSG00000142864.13ENST00000370994hsa-miR-1468-3p67409075674090828mer-1a6740907567409096152.00-11.79
CAediting_73467chr1_67409077_-ENSG00000142864.13ENST00000370994hsa-miR-548aw67409075674090817mer-m86740907467409093142.00-6.64
CAediting_73470chr1_67409145_-ENSG00000142864.13ENST00000370994hsa-miR-453967409145674091506mer6740914467409163145.00-21.50
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-25-5p67409157674091637mer-m86740915667409176147.00-20.74
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-65867409158674091647mer-m86740915767409182149.00-28.56
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-1285-3p67409201674092066mer6740920067409221148.00-26.78
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-1285-3p67409201674092066mer6740920067409221148.00-26.78
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-448667409201674092077mer-m86740920067409219146.00-22.51
CAediting_73480chr1_67409222_-ENSG00000142864.13ENST00000370994hsa-miR-397767409220674092267mer-m86740921967409242160.00-13.49
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-320a-3p67411102674111076mer6741110167411122153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-320b67411102674111076mer6741110167411122153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-320b67411102674111076mer6741110167411122153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-320c67411102674111076mer6741110167411120153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-320c67411102674111076mer6741110167411120153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-320d67411102674111076mer6741110167411119153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-320d67411102674111076mer6741110167411119153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370994hsa-miR-442967411102674111076mer6741110167411120145.00-15.27
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-320a-3p67411102674111076mer6741110167411122153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-320b67411102674111076mer6741110167411122153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-320b67411102674111076mer6741110167411122153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-320c67411102674111076mer6741110167411120153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-320c67411102674111076mer6741110167411120153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-320d67411102674111076mer6741110167411119153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-320d67411102674111076mer6741110167411119153.00-19.65
CAediting_73482chr1_67411106_-ENSG00000142864.13ENST00000370995hsa-miR-442967411102674111076mer6741110167411120145.00-15.27

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_73473chr1_67409166_-ENSG00000142864.13ENST00000370994hsa-miR-118467409165674091706mer6740916467409186141-22
CAediting_73473chr1_67409166_-ENSG00000142864.13ENST00000370994hsa-miR-118467409165674091706mer6740916467409186141-22
CAediting_73473chr1_67409166_-ENSG00000142864.13ENST00000370994hsa-miR-118467409165674091706mer6740916467409186141-22
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-1211467409156674091627mer-m86740915567409172155-22.4
CAediting_73477chr1_67409202_-ENSG00000142864.13ENST00000370994hsa-miR-126267409202674092087mer-m86740920167409222140-17.58
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-126267409202674092087mer-m86740920167409222140-17.58
CAediting_73462chr1_67409035_-ENSG00000142864.13ENST00000370994hsa-miR-1306-5p67409031674090377mer-m86740903067409051147-21.98
CAediting_73473chr1_67409166_-ENSG00000142864.13ENST00000370994hsa-miR-17-3p67409165674091717mer-m86740916467409185150-18.74
CAediting_73469chr1_67409142_-ENSG00000142864.13ENST00000370994hsa-miR-219b-3p67409138674091447mer-m86740913767409157153-15.53
CAediting_73469chr1_67409142_-ENSG00000142864.13ENST00000370994hsa-miR-302f67409139674091457mer-m86740913867409154145-8.09
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-3689d67409154674091607mer-m86740915367409175143-18.85
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-3689d67409154674091607mer-m86740915367409175143-18.85
CAediting_73475chr1_67409176_-ENSG00000142864.13ENST00000370994hsa-miR-432467409174674091807mer-m86740917367409192146-12.25
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-444367409159674091657mer-m86740915867409175143-15.73
CAediting_73479chr1_67409220_-ENSG00000142864.13ENST00000370994hsa-miR-449467409215674092217mer-m86740921467409235147-21.54
CAediting_73480chr1_67409222_-ENSG00000142864.13ENST00000370994hsa-miR-452-5p67409218674092247mer-m86740921767409237163-16.36
CAediting_73479chr1_67409220_-ENSG00000142864.13ENST00000370994hsa-miR-4676-3p67409218674092247mer-m86740921767409241151-17.04
CAediting_73480chr1_67409222_-ENSG00000142864.13ENST00000370994hsa-miR-4676-3p67409218674092247mer-m86740921767409241151-17.04
CAediting_73477chr1_67409202_-ENSG00000142864.13ENST00000370994hsa-miR-4701-3p67409202674092087mer-m86740920167409220149-18.27
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-4701-3p67409202674092087mer-m86740920167409220149-18.27
CAediting_73461chr1_67409022_-ENSG00000142864.13ENST00000370994hsa-miR-4772-3p67409021674090277mer-m86740902067409042150-17.58
CAediting_73476chr1_67409195_-ENSG00000142864.13ENST00000370994hsa-miR-508-5p67409193674091997mer-m86740919267409214150-20.08
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-542-3p67409205674092117mer-m86740920467409224153-16.7
CAediting_73475chr1_67409176_-ENSG00000142864.13ENST00000370994hsa-miR-544b67409174674091796mer6740917367409195150-21.69
CAediting_73483chr1_67412008_-ENSG00000142864.13ENST00000370994hsa-miR-63367412008674120136mer6741200767412029145-8.25
CAediting_73476chr1_67409195_-ENSG00000142864.13ENST00000370994hsa-miR-6512-3p67409195674092017mer-m86740919467409215142-19.67
CAediting_73477chr1_67409202_-ENSG00000142864.13ENST00000370994hsa-miR-66167409199674092057mer-m86740919867409221154-24.03
CAediting_73476chr1_67409195_-ENSG00000142864.13ENST00000370994hsa-miR-6720-5p67409195674092017mer-m86740919467409218155-27.44
CAediting_73477chr1_67409202_-ENSG00000142864.13ENST00000370994hsa-miR-6736-5p67409202674092087mer-m86740920167409225147-25.77
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-6736-5p67409202674092087mer-m86740920167409225147-25.77
CAediting_73477chr1_67409202_-ENSG00000142864.13ENST00000370994hsa-miR-6742-3p67409200674092067mer-m86740919967409218140-17.55
CAediting_73477chr1_67409202_-ENSG00000142864.13ENST00000370994hsa-miR-6776-5p67409201674092077mer-m86740920067409219148-20.27
CAediting_73478chr1_67409206_-ENSG00000142864.13ENST00000370994hsa-miR-6776-5p67409201674092077mer-m86740920067409219148-20.27
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-6851-5p67409154674091607mer-m86740915367409178150-24.97
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-6880-5p67409157674091637mer-m86740915667409177148-23.56
CAediting_73473chr1_67409166_-ENSG00000142864.13ENST00000370994hsa-miR-6884-5p67409161674091677mer-m86740916067409183146-22.15
CAediting_73476chr1_67409195_-ENSG00000142864.13ENST00000370994hsa-miR-766-3p67409194674092007mer-m86740919367409214145-20.72
CAediting_73472chr1_67409159_-ENSG00000142864.13ENST00000370994hsa-miR-7847-3p67409158674091647mer-m86740915767409177145-18.48
CAediting_73468chr1_67409112_-ENSG00000142864.13ENST00000370994hsa-miR-797767409112674091187mer-m86740911167409127145-13.47
CAediting_73465chr1_67409051_-ENSG00000142864.13ENST00000370994hsa-miR-806267409046674090527mer-m86740904567409065147-10.78
CAediting_73479chr1_67409220_-ENSG00000142864.13ENST00000370994hsa-miR-892c-3p67409218674092247mer-m86740921767409238145-9
CAediting_73480chr1_67409222_-ENSG00000142864.13ENST00000370994hsa-miR-892c-3p67409218674092247mer-m86740921767409238145-9
CAediting_73483chr1_67412008_-ENSG00000142864.13ENST00000370995hsa-miR-63367412008674120136mer6741200767412029145-8.25

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846604chr11_93733708_-ENSG00000142864.13ENST00000370994hsa-miR-1304-3p67409935674099428mer-1a6740993567409956142-15.74
CAediting_688081chr9_63819627_+ENSG00000142864.13ENST00000370994hsa-miR-4477b67410693674107008mer-1a6741069367410714149-12.07
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67410989674109957mer-m86741098867411013148-12.63
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67410550674105567mer-m86741054967410579150-13.65
CAediting_77128chr1_85133844_+ENSG00000142864.13ENST00000370994hsa-miR-4423-3p67408368674083736mer6740836767408386141-19.06
CAediting_1399425chr20_1392958_-ENSG00000142864.13ENST00000370994hsa-miR-6869-5p67411459674114657mer-m86741145867411478143-17.12
CAediting_1399425chr20_1392958_-ENSG00000142864.13ENST00000370994hsa-miR-6869-5p67408926674089338mer-1a6740892667408947140-16.02
CAediting_580943chr7_100356700_+ENSG00000142864.13ENST00000370994hsa-miR-6840-3p67409150674091567mer-m86740914967409170143-27.34
CAediting_573000chr7_92204081_-ENSG00000142864.13ENST00000370994hsa-miR-1285-5p67409934674099407mer-m86740993367409953145-16.65
CAediting_1399425chr20_1392958_-ENSG00000142864.13ENST00000370995hsa-miR-6869-5p67411459674114657mer-m86741145867411478143-17.12

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_86358chr1_109598906_+ENSG00000142864.13ENST00000370994hsa-miR-197-5p67408927674089348mer-1a6740892767408949140-13.04
CAediting_604450chr7_133034877_-ENSG00000142864.13ENST00000370994hsa-miR-365467411737674117437mer-m86741173667411754145-13.67
CAediting_688081chr9_63819627_+ENSG00000142864.13ENST00000370994hsa-miR-4477b67408162674081698mer-1a6740816267408183140-6.84
CAediting_414656chr5_72878640_+ENSG00000142864.13ENST00000370994hsa-miR-4804-3p67410754674107618mer-1a6741075467410774147-11.19
CAediting_414656chr5_72878640_+ENSG00000142864.13ENST00000370994hsa-miR-4804-3p67410515674105228mer-1a6741051567410538146-17.04
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67410245674102517mer-m86741024467410266146-15.65
CAediting_1229414chr17_67471546_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67410245674102517mer-m86741024467410266146-15.65
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67409360674093667mer-m86740935967409384154-12.1
CAediting_1229414chr17_67471546_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67409360674093667mer-m86740935967409384154-12.1
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67412797674128048mer-1a6741279767412822144-5.99
CAediting_1229414chr17_67471546_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67412797674128048mer-1a6741279767412822144-5.99
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67412775674127828mer-1a6741277567412799144-7.95
CAediting_1229414chr17_67471546_+ENSG00000142864.13ENST00000370994hsa-miR-548aa67412775674127828mer-1a6741277567412799144-7.95
CAediting_117844chr1_162342605_+ENSG00000142864.13ENST00000370994hsa-miR-556-3p67411082674110898mer-1a6741108267411104144-9.46
CAediting_228905chr2_188297554_+ENSG00000142864.13ENST00000370994hsa-miR-561-3p67411656674116627mer-m86741165567411676140-8.31
CAediting_524911chr7_5495852_-ENSG00000142864.13ENST00000370994hsa-miR-589-3p67411513674115197mer-m86741151267411535146-16.37
CAediting_524911chr7_5495852_-ENSG00000142864.13ENST00000370994hsa-miR-589-3p67412279674122857mer-m86741227867412301140-8.76
CAediting_980496chr14_31014685_-ENSG00000142864.13ENST00000370994hsa-miR-624-3p67408179674081857mer-m86740817867408198149-15.42
CAediting_1399425chr20_1392958_-ENSG00000142864.13ENST00000370994hsa-miR-6869-5p67411282674112898mer-1a6741128267411303147-15.32
CAediting_604450chr7_133034877_-ENSG00000142864.13ENST00000370995hsa-miR-365467411737674117437mer-m86741173667411754145-13.67
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370995hsa-miR-548aa67412797674128048mer-1a6741279767412822144-5.99
CAediting_1229413chr17_67471544_+ENSG00000142864.13ENST00000370995hsa-miR-548aa67412775674127828mer-1a6741277567412799144-7.95
CAediting_117844chr1_162342605_+ENSG00000142864.13ENST00000370995hsa-miR-556-3p67411082674110898mer-1a6741108267411104144-9.46
CAediting_228905chr2_188297554_+ENSG00000142864.13ENST00000370995hsa-miR-561-3p67411656674116627mer-m86741165567411676140-8.31
CAediting_1399425chr20_1392958_-ENSG00000142864.13ENST00000370995hsa-miR-6869-5p67411282674112898mer-1a6741128267411303147-15.32

check button Differentially expressed gene-miRNA network
boxplot

Top

The effects of the RNA editing to the stability of the RNA structures for SERBP1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000370994.7protein_codingSoverviewSoverview
ENST00000370995.5protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_73457ENST00000370994.7chr1_67409008_--1894.60-1895.00-1906.30
CAediting_73458ENST00000370994.7chr1_67409011_--1894.40-1895.00-1906.30
CAediting_73459ENST00000370994.7chr1_67409014_--1898.40-1895.00-1906.30
CAediting_73460ENST00000370994.7chr1_67409018_--1894.10-1895.00-1906.30
CAediting_73461ENST00000370994.7chr1_67409022_--1894.30-1895.00-1906.30
CAediting_73462ENST00000370994.7chr1_67409035_--1894.10-1895.00-1906.30
CAediting_73463ENST00000370994.7chr1_67409042_--1895.00-1895.00-1906.30
CAediting_73464ENST00000370994.7chr1_67409043_--1894.50-1895.00-1906.30
CAediting_73465ENST00000370994.7chr1_67409051_--1895.00-1895.00-1906.30
CAediting_73466ENST00000370994.7chr1_67409052_--1894.50-1895.00-1906.30
CAediting_73467ENST00000370994.7chr1_67409077_--1896.30-1895.00-1906.30
CAediting_73468ENST00000370994.7chr1_67409112_--1897.00-1895.00-1906.30
CAediting_73469ENST00000370994.7chr1_67409142_--1899.20-1895.00-1906.30
CAediting_73470ENST00000370994.7chr1_67409145_--1894.70-1895.00-1906.30
CAediting_73471ENST00000370994.7chr1_67409146_--1894.70-1895.00-1906.30
CAediting_73472ENST00000370994.7chr1_67409159_--1894.60-1895.00-1906.30
CAediting_73473ENST00000370994.7chr1_67409166_--1894.20-1895.00-1906.30
CAediting_73474ENST00000370994.7chr1_67409171_--1894.60-1895.00-1906.30
CAediting_73475ENST00000370994.7chr1_67409176_--1898.60-1895.00-1906.30
CAediting_73476ENST00000370994.7chr1_67409195_--1894.10-1895.00-1906.30
CAediting_73477ENST00000370994.7chr1_67409202_--1894.30-1895.00-1906.30
CAediting_73478ENST00000370994.7chr1_67409206_--1894.60-1895.00-1906.30
CAediting_73479ENST00000370994.7chr1_67409220_--1894.20-1895.00-1906.30
CAediting_73480ENST00000370994.7chr1_67409222_--1895.00-1895.00-1906.30
CAediting_73481ENST00000370994.7chr1_67409224_--1894.50-1895.00-1906.30
CAediting_73482ENST00000370994.7chr1_67411106_--1896.60-1895.00-1906.30
CAediting_73483ENST00000370994.7chr1_67412008_--1895.00-1895.00-1906.30
CAediting_73484ENST00000370994.7chr1_67412054_--1897.00-1895.00-1906.30
CAediting_73482ENST00000370995.5chr1_67411106_--972.30-968.70-974.30
CAediting_73483ENST00000370995.5chr1_67412008_--968.70-968.70-974.30
CAediting_73484ENST00000370995.5chr1_67412054_--970.70-968.70-974.30

Top

Relation with ADAR for SERBP1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_73457chr1_67409008_-0.0008928754667469520.226015501029432....
LIHCCAediting_73457chr1_67409008_-0.02738148115808970.181366221527217....
LUADCAediting_73457chr1_67409008_-0.006589708135580340.284421547281425....
BLCACAediting_73459chr1_67409014_-1.00960723722528e-210.475644321066716....
LGGCAediting_73459chr1_67409014_-5.97881962467781e-130.34060722197203....
BRCACAediting_73459chr1_67409014_-2.01043246365679e-720.51596059995225....
LIHCCAediting_73459chr1_67409014_-5.26003686794888e-070.294950843993146....
CESCCAediting_73459chr1_67409014_-1.82707882753122e-150.445748407096006....
LUADCAediting_73459chr1_67409014_-2.53244043281662e-190.40069808956418....
COADCAediting_73459chr1_67409014_-6.28047599401596e-150.38714349386127....
LUSCCAediting_73459chr1_67409014_-6.53381228900915e-220.431387670766091....
GBMCAediting_73459chr1_67409014_-6.12357224767807e-090.455250613274132....
PRADCAediting_73459chr1_67409014_-3.5992270543806e-170.377579917183264....
HNSCCAediting_73459chr1_67409014_-7.00476798828228e-140.338571961767952....
STADCAediting_73459chr1_67409014_-2.54214576400373e-100.344040582501601....
THCACAediting_73459chr1_67409014_-4.33026318709573e-210.404718454453624....
KIRCCAediting_73459chr1_67409014_-8.96163888538595e-060.196176654295576....
UCECCAediting_73459chr1_67409014_-1.37376542342576e-200.4245005450189070.0002207343944449270.175635189073498..
ACCCAediting_73459chr1_67409014_-1.55597804189566e-070.634021739275023....
ESCACAediting_73459chr1_67409014_-1.66422815307234e-070.398352763845681....
OVCAediting_73459chr1_67409014_-6.55419105917113e-150.404703847246777....
PAADCAediting_73459chr1_67409014_-1.88266766172816e-090.445046674836626....
PCPGCAediting_73459chr1_67409014_-0.0121976404505540.260344376849231....
SKCMCAediting_73459chr1_67409014_-5.77581507765025e-240.485863125342886....
UCSCAediting_73459chr1_67409014_-0.0002380673802344450.492917863625811....
UVMCAediting_73459chr1_67409014_-0.008092651506981970.366885657327538....
MESOCAediting_73459chr1_67409014_-0.0001056764968139810.412700539229718....
READCAediting_73459chr1_67409014_-5.66478014743193e-080.459120513940111....
SARCCAediting_73459chr1_67409014_-1.7578484853103e-170.526010603697252....
TGCTCAediting_73459chr1_67409014_-5.93743420303861e-130.57265540089034....
THYMCAediting_73459chr1_67409014_-1.58216398542614e-080.51746545588310.02019371104916940.2264330912517134.74101575513341e-050.386112677731795
BRCACAediting_73461chr1_67409022_-0.0002086384486973980.277582769476343....
LIHCCAediting_73461chr1_67409022_-0.0007271552621577390.332428612359291....
BRCACAediting_73463chr1_67409042_-0.001288866616145110.216631863416942....
LIHCCAediting_73463chr1_67409042_-0.00459169125542560.238224576141841....
LUADCAediting_73463chr1_67409042_-0.02729837118627930.262005507231999....
STADCAediting_73463chr1_67409042_-0.04513968255907590.266435285148412....
STADCAediting_73469chr1_67409142_-....0.0005353411043218210.359733552677657
BLCACAediting_73473chr1_67409166_-4.19286687233819e-060.330974395805482....
LGGCAediting_73473chr1_67409166_-..0.01659238250241480.22596359015162..
BRCACAediting_73473chr1_67409166_-4.98294481321354e-380.44892135311781....
LIHCCAediting_73473chr1_67409166_-0.001765494202670730.227802257697977....
CESCCAediting_73473chr1_67409166_-1.22054621495971e-070.367850011689879....
LUADCAediting_73473chr1_67409166_-4.81708437643493e-130.42204106158003....
COADCAediting_73473chr1_67409166_-0.04253599160567350.166400816313043....
LUSCCAediting_73473chr1_67409166_-3.80641072820523e-080.349255902603308....
GBMCAediting_73473chr1_67409166_-0.01658800882652070.256249569972359....
PRADCAediting_73473chr1_67409166_-2.72636572839526e-070.400128082750909....
HNSCCAediting_73473chr1_67409166_-7.35424921377194e-050.238447056780763....
STADCAediting_73473chr1_67409166_-6.05939055341166e-050.252319957837598....
THCACAediting_73473chr1_67409166_-8.29312259236573e-070.286540273978662....
KIRCCAediting_73473chr1_67409166_-0.000747266838526080.179652807759309....
UCECCAediting_73473chr1_67409166_-0.01701891859959330.157567003491788....
ESCACAediting_73473chr1_67409166_-0.0007112495319367490.289939924259232....
OVCAediting_73473chr1_67409166_-3.94966349283104e-060.268966082950924....
PAADCAediting_73473chr1_67409166_-0.02341100816911580.259827018259247....
SKCMCAediting_73473chr1_67409166_-0.003837578712772610.215668844449563....
MESOCAediting_73473chr1_67409166_-0.001549037369016310.424177044759556....
SARCCAediting_73473chr1_67409166_-0.001447089425796090.346109103334583....
TGCTCAediting_73473chr1_67409166_-2.66919817134453e-060.506022872664084....
THYMCAediting_73473chr1_67409166_-0.00144166526013840.434534085534963....
BLCACAediting_73475chr1_67409176_-2.36443989960745e-130.436827308183786....
LGGCAediting_73475chr1_67409176_-1.14383652250979e-060.3002675356695820.002777296685339910.187325776523640.02264214960220330.143275226732276
BRCACAediting_73475chr1_67409176_-2.58455104924994e-750.54317748719449....
LIHCCAediting_73475chr1_67409176_-1.34204258252069e-070.38582454833699....
CESCCAediting_73475chr1_67409176_-3.65264789756515e-100.376855052087161....
LUADCAediting_73475chr1_67409176_-2.27106348471631e-140.385378164569641....
COADCAediting_73475chr1_67409176_-7.08624381725308e-050.228843757742727....
LUSCCAediting_73475chr1_67409176_-2.09563078860325e-180.443627559765347..0.02847943351477090.116775964372837
GBMCAediting_73475chr1_67409176_-2.2739660914852e-080.431684497777345....
PRADCAediting_73475chr1_67409176_-2.54469464535117e-100.349764474900304....
HNSCCAediting_73475chr1_67409176_-7.40948703707377e-120.342283590592685....
STADCAediting_73475chr1_67409176_-3.47818695155222e-110.35617709597178....
THCACAediting_73475chr1_67409176_-3.38641500523686e-140.344005348911749....
KIRCCAediting_73475chr1_67409176_-4.98080696759255e-060.213568185453954....
UCECCAediting_73475chr1_67409176_-4.70122057945032e-100.32197104814412....
ESCACAediting_73475chr1_67409176_-3.27307425279657e-060.358361474045238....
OVCAediting_73475chr1_67409176_-1.72083201269342e-130.381868157534072....
PAADCAediting_73475chr1_67409176_-0.0002856115333887860.32294302642116....
SKCMCAediting_73475chr1_67409176_-2.65792897675135e-200.500545030855391....
MESOCAediting_73475chr1_67409176_-0.0006312523540015610.425418417579652....
READCAediting_73475chr1_67409176_-0.03571132309961930.23231141532915....
SARCCAediting_73475chr1_67409176_-7.39489954738114e-060.357952723671331....
TGCTCAediting_73475chr1_67409176_-6.17688580790775e-060.404256712653724....
THYMCAediting_73475chr1_67409176_-3.18671932556144e-060.511595444696412..0.005095525420259530.322349682004286

Top

Relation with cancer stages for SERBP1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_73459chr1_67409014_-0.02078915577167410.122151315388065
BRCApathologic_stageCAediting_73465chr1_67409051_-0.02590052872948740.297620183033905
CESCclinical_stageCAediting_73475chr1_67409176_-0.00631632725259048-0.170931606505267
ESCApathologic_stageCAediting_73562chr1_67417613_-0.02119566840631270.24539809095899
HNSCpathologic_stageCAediting_73459chr1_67409014_-0.0454730743420960.0994541663595869
KIRCpathologic_stageCAediting_73459chr1_67409014_-0.002818215765004260.132918606592878
KIRCpathologic_stageCAediting_73463chr1_67409042_-0.0355036079681460.284163683933048
KIRCpathologic_stageCAediting_73473chr1_67409166_-0.003798547061285390.15477824403811
KIRCpathologic_stageCAediting_73475chr1_67409176_-0.001964224954387470.146039509625879
LIHCpathologic_stageCAediting_73473chr1_67409166_-0.0402194696262288-0.15752044271619
LUSCpathologic_stageCAediting_73459chr1_67409014_-0.001057778007656130.154218885243439
THCApathologic_stageCAediting_73473chr1_67409166_-0.01698668265650020.142305135380076
THCApathologic_stageCAediting_73475chr1_67409176_-0.02030177896606190.109013151129827

Top

Relation with survival for SERBP1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
BRCACAediting_73473chr1_67409166_-0.01292333669855590.0151150.0803996
PRADCAediting_73459chr1_67409014_-0.01966973629197440.0164486.13145e-07
STADCAediting_73463chr1_67409042_-0.002067258833725490.008882988.61719e-07
KIRCCAediting_73473chr1_67409166_-0.04833138637414250.01189916.9397
ESCACAediting_73562chr1_67417613_-0.000308636416150310.04421125.47215
OVCAediting_73464chr1_67409043_-0.0453019952505870.001966665954.42
OVCAediting_73584chr1_67418113_-0.008751077514891680.0070621457.8691

Top

RelatedDrugs for SERBP1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for SERBP1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
SERBP1C0024623Malignant neoplasm of stomach1CTD_human
SERBP1C0038356Stomach Neoplasms1CTD_human
SERBP1C0235874Disease Exacerbation1CTD_human
SERBP1C1708349Hereditary Diffuse Gastric Cancer1CTD_human