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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CHTOP (CAeditome ID:26097)

Gene summary for CHTOP

check button Gene summary
Gene informationGene symbol

CHTOP

Gene ID

26097

Gene namechromatin target of PRMT1
SynonymsC10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704
Cytomap

1q21.3

Type of geneprotein-coding
Descriptionchromatin target of PRMT1 proteinfriend of PRMT1 proteinsmall protein rich in arginine and glycine
Modification date20210518
UniProtAcc

Q9Y3Y2

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CHTOP

GO:0008327

Chromatin target of PRMT1 protein

25284789

CHTOP

GO:0006406

Chromatin target of PRMT1 protein

23299939

CHTOP

GO:0032781

Chromatin target of PRMT1 protein

23299939

CHTOP

GO:0051096

Chromatin target of PRMT1 protein

23299939

CHTOP

GO:0016607

Chromatin target of PRMT1 protein

0000052

CHTOP

GO:0016607

Chromatin target of PRMT1 protein

23299939

CHTOP

GO:0036464

Chromatin target of PRMT1 protein

0000052

CHTOP

GO:0000346

Chromatin target of PRMT1 protein

23299939


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RNA A-to-I events for CHTOP

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000160679.11
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_103986(153636197, +), CAediting_103987(153637394, +), CAediting_103988(153637395, +), CAediting_103989(153637400, +), CAediting_103990(153637430, +), CAediting_103991(153637487, +), CAediting_103992(153637489, +), CAediting_103993(153637490, +), CAediting_103994(153637501, +), CAediting_103995(153637533, +), CAediting_103996(153637537, +), CAediting_103997(153637544, +), CAediting_103998(153637569, +), CAediting_103999(153637581, +), CAediting_104000(153637593, +), CAediting_104001(153637597, +), CAediting_104002(153637630, +), CAediting_104003(153637635, +), CAediting_104004(153637637, +), CAediting_104005(153637664, +), CAediting_104006(153638942, +), CAediting_104007(153638945, +), CAediting_104008(153638982, +), CAediting_104009(153638998, +), CAediting_104010(153639010, +), CAediting_104011(153639021, +), CAediting_104012(153639022, +), CAediting_104013(153639063, +), CAediting_104014(153639066, +), CAediting_104015(153639080, +), CAediting_104016(153639085, +), CAediting_104017(153639141, +), CAediting_104018(153639143, +), CAediting_104019(153639155, +), CAediting_104020(153639811, +), CAediting_104021(153639831, +), CAediting_104022(153639855, +), CAediting_104023(153639861, +), CAediting_104024(153639862, +), CAediting_104025(153639866, +), CAediting_104026(153639871, +), CAediting_104027(153639891, +), CAediting_104028(153639909, +), CAediting_104029(153639913, +), CAediting_104030(153639915, +), CAediting_104031(153639931, +), CAediting_104032(153639939, +), CAediting_104033(153639954, +), CAediting_104034(153639957, +), CAediting_104035(153639961, +), CAediting_104036(153639983, +), CAediting_104037(153639985, +), CAediting_104038(153639996, +), CAediting_104039(153640003, +), CAediting_104040(153640008, +), CAediting_104041(153640009, +), CAediting_104042(153640013, +), CAediting_104043(153640034, +), CAediting_104044(153640036, +), CAediting_104045(153640043, +), CAediting_104046(153640077, +), CAediting_104047(153640121, +), CAediting_104048(153640206, +), CAediting_104049(153640211, +), CAediting_104050(153640220, +), CAediting_104051(153640225, +), CAediting_104052(153640228, +), CAediting_104053(153640242, +), CAediting_104054(153640246, +), CAediting_104055(153640252, +), CAediting_104056(153640255, +), CAediting_104057(153640260, +), CAediting_104058(153640265, +), CAediting_104059(153640268, +), CAediting_104060(153640276, +), CAediting_104061(153640288, +), CAediting_104062(153640289, +), CAediting_104063(153640297, +), CAediting_104064(153640299, +), CAediting_104065(153640310, +), CAediting_104066(153640315, +), CAediting_104067(153640316, +), CAediting_104068(153640317, +), CAediting_104069(153640319, +), CAediting_104070(153640320, +), CAediting_104071(153640322, +), CAediting_104072(153640323, +), CAediting_104073(153640334, +), CAediting_104074(153640352, +), CAediting_104075(153640353, +), CAediting_104076(153640366, +), CAediting_104077(153640381, +), CAediting_104078(153640390, +), CAediting_104079(153640394, +), CAediting_104080(153640398, +), CAediting_104081(153640414, +), CAediting_104082(153640419, +), CAediting_104083(153640426, +), CAediting_104084(153640492, +), CAediting_104085(153640518, +), CAediting_104086(153640524, +), CAediting_104087(153640525, +), CAediting_104088(153640530, +), CAediting_104089(153640533, +), CAediting_104090(153640551, +), CAediting_104091(153640565, +), CAediting_104092(153640570, +), CAediting_104093(153640573, +), CAediting_104094(153640578, +), CAediting_104095(153640579, +), CAediting_104096(153640581, +), CAediting_104097(153640584, +), CAediting_104098(153640593, +), CAediting_104099(153640594, +), CAediting_104100(153640596, +), CAediting_104101(153640599, +), CAediting_104102(153640601, +), CAediting_104103(153640602, +), CAediting_104104(153640618, +), CAediting_104105(153640620, +), CAediting_104106(153640621, +), CAediting_104107(153640622, +), CAediting_104108(153640625, +), CAediting_104109(153640636, +), CAediting_104110(153640641, +), CAediting_104111(153640650, +), CAediting_104112(153640651, +), CAediting_104113(153640656, +), CAediting_104114(153640660, +), CAediting_104115(153640667, +), CAediting_104116(153640673, +), CAediting_104117(153640677, +), CAediting_104118(153640683, +), CAediting_104119(153640691, +), CAediting_104120(153640692, +), CAediting_104121(153640699, +), CAediting_104122(153640701, +), CAediting_104123(153640704, +), CAediting_104124(153640705, +), CAediting_104125(153640712, +), CAediting_104126(153640716, +), CAediting_104127(153640720, +), CAediting_104128(153640721, +), CAediting_104129(153640723, +), CAediting_104130(153640731, +), CAediting_104131(153640751, +), CAediting_104132(153640753, +), CAediting_104133(153640755, +),

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RNA editing positional annotations for CHTOP using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_103986chr1_153636197_+ncRNA_intronic
CAediting_103987chr1_153637394_+ncRNA_exonic
CAediting_103988chr1_153637395_+ncRNA_exonic
CAediting_103989chr1_153637400_+ncRNA_exonic
CAediting_103990chr1_153637430_+ncRNA_exonic
CAediting_103991chr1_153637487_+ncRNA_exonic
CAediting_103992chr1_153637489_+ncRNA_exonic
CAediting_103993chr1_153637490_+ncRNA_exonic
CAediting_103994chr1_153637501_+ncRNA_exonic
CAediting_103995chr1_153637533_+ncRNA_exonic
CAediting_103996chr1_153637537_+ncRNA_exonic
CAediting_103997chr1_153637544_+ncRNA_exonic
CAediting_103998chr1_153637569_+ncRNA_exonic
CAediting_103999chr1_153637581_+ncRNA_exonic
CAediting_104000chr1_153637593_+ncRNA_exonic
CAediting_104001chr1_153637597_+ncRNA_exonic
CAediting_104002chr1_153637630_+ncRNA_exonic
CAediting_104003chr1_153637635_+ncRNA_exonic
CAediting_104004chr1_153637637_+ncRNA_exonic
CAediting_104005chr1_153637664_+ncRNA_exonic
CAediting_104006chr1_153638942_+ncRNA_intronic
CAediting_104007chr1_153638945_+ncRNA_intronic
CAediting_104008chr1_153638982_+ncRNA_intronic
CAediting_104009chr1_153638998_+ncRNA_intronic
CAediting_104010chr1_153639010_+ncRNA_intronic
CAediting_104011chr1_153639021_+ncRNA_intronic
CAediting_104012chr1_153639022_+ncRNA_intronic
CAediting_104013chr1_153639063_+ncRNA_intronic
CAediting_104014chr1_153639066_+ncRNA_intronic
CAediting_104015chr1_153639080_+ncRNA_intronic
CAediting_104016chr1_153639085_+ncRNA_intronic
CAediting_104017chr1_153639141_+ncRNA_intronic
CAediting_104018chr1_153639143_+ncRNA_intronic
CAediting_104019chr1_153639155_+ncRNA_intronic
CAediting_104020chr1_153639811_+ncRNA_intronic
CAediting_104021chr1_153639831_+ncRNA_intronic
CAediting_104022chr1_153639855_+ncRNA_intronic
CAediting_104023chr1_153639861_+ncRNA_intronic
CAediting_104024chr1_153639862_+ncRNA_intronic
CAediting_104025chr1_153639866_+ncRNA_intronic
CAediting_104026chr1_153639871_+ncRNA_intronic
CAediting_104027chr1_153639891_+ncRNA_intronic
CAediting_104028chr1_153639909_+ncRNA_intronic
CAediting_104029chr1_153639913_+ncRNA_intronic
CAediting_104030chr1_153639915_+ncRNA_intronic
CAediting_104031chr1_153639931_+ncRNA_intronic
CAediting_104032chr1_153639939_+ncRNA_intronic
CAediting_104033chr1_153639954_+ncRNA_intronic
CAediting_104034chr1_153639957_+ncRNA_intronic
CAediting_104035chr1_153639961_+ncRNA_intronic
CAediting_104036chr1_153639983_+ncRNA_intronic
CAediting_104037chr1_153639985_+ncRNA_intronic
CAediting_104038chr1_153639996_+ncRNA_intronic
CAediting_104039chr1_153640003_+ncRNA_intronic
CAediting_104040chr1_153640008_+ncRNA_intronic
CAediting_104041chr1_153640009_+ncRNA_intronic
CAediting_104042chr1_153640013_+ncRNA_intronic
CAediting_104043chr1_153640034_+ncRNA_intronic
CAediting_104044chr1_153640036_+ncRNA_intronic
CAediting_104045chr1_153640043_+ncRNA_intronic
CAediting_104046chr1_153640077_+ncRNA_intronic
CAediting_104047chr1_153640121_+ncRNA_intronic
CAediting_104048chr1_153640206_+ncRNA_intronic
CAediting_104049chr1_153640211_+ncRNA_intronic
CAediting_104050chr1_153640220_+ncRNA_intronic
CAediting_104051chr1_153640225_+ncRNA_intronic
CAediting_104052chr1_153640228_+ncRNA_intronic
CAediting_104053chr1_153640242_+ncRNA_intronic
CAediting_104054chr1_153640246_+ncRNA_intronic
CAediting_104055chr1_153640252_+ncRNA_intronic
CAediting_104056chr1_153640255_+ncRNA_intronic
CAediting_104057chr1_153640260_+ncRNA_intronic
CAediting_104058chr1_153640265_+ncRNA_intronic
CAediting_104059chr1_153640268_+ncRNA_intronic
CAediting_104060chr1_153640276_+ncRNA_intronic
CAediting_104061chr1_153640288_+ncRNA_intronic
CAediting_104062chr1_153640289_+ncRNA_intronic
CAediting_104063chr1_153640297_+ncRNA_intronic
CAediting_104064chr1_153640299_+ncRNA_intronic
CAediting_104065chr1_153640310_+ncRNA_intronic
CAediting_104066chr1_153640315_+ncRNA_intronic
CAediting_104067chr1_153640316_+ncRNA_intronic
CAediting_104068chr1_153640317_+ncRNA_intronic
CAediting_104069chr1_153640319_+ncRNA_intronic
CAediting_104070chr1_153640320_+ncRNA_intronic
CAediting_104071chr1_153640322_+ncRNA_intronic
CAediting_104072chr1_153640323_+ncRNA_intronic
CAediting_104073chr1_153640334_+ncRNA_intronic
CAediting_104074chr1_153640352_+ncRNA_intronic
CAediting_104075chr1_153640353_+ncRNA_intronic
CAediting_104076chr1_153640366_+ncRNA_intronic
CAediting_104077chr1_153640381_+ncRNA_intronic
CAediting_104078chr1_153640390_+ncRNA_intronic
CAediting_104079chr1_153640394_+ncRNA_intronic
CAediting_104080chr1_153640398_+ncRNA_intronic
CAediting_104081chr1_153640414_+ncRNA_intronic
CAediting_104082chr1_153640419_+ncRNA_intronic
CAediting_104083chr1_153640426_+ncRNA_intronic
CAediting_104084chr1_153640492_+ncRNA_intronic
CAediting_104085chr1_153640518_+ncRNA_intronic
CAediting_104086chr1_153640524_+ncRNA_intronic
CAediting_104087chr1_153640525_+ncRNA_intronic
CAediting_104088chr1_153640530_+ncRNA_intronic
CAediting_104089chr1_153640533_+ncRNA_intronic
CAediting_104090chr1_153640551_+ncRNA_intronic
CAediting_104091chr1_153640565_+ncRNA_intronic
CAediting_104092chr1_153640570_+ncRNA_intronic
CAediting_104093chr1_153640573_+ncRNA_intronic
CAediting_104094chr1_153640578_+ncRNA_intronic
CAediting_104095chr1_153640579_+ncRNA_intronic
CAediting_104096chr1_153640581_+ncRNA_intronic
CAediting_104097chr1_153640584_+ncRNA_intronic
CAediting_104098chr1_153640593_+ncRNA_intronic
CAediting_104099chr1_153640594_+ncRNA_intronic
CAediting_104100chr1_153640596_+ncRNA_intronic
CAediting_104101chr1_153640599_+ncRNA_intronic
CAediting_104102chr1_153640601_+ncRNA_intronic
CAediting_104103chr1_153640602_+ncRNA_intronic
CAediting_104104chr1_153640618_+ncRNA_intronic
CAediting_104105chr1_153640620_+ncRNA_intronic
CAediting_104106chr1_153640621_+ncRNA_intronic
CAediting_104107chr1_153640622_+ncRNA_intronic
CAediting_104108chr1_153640625_+ncRNA_intronic
CAediting_104109chr1_153640636_+ncRNA_intronic
CAediting_104110chr1_153640641_+ncRNA_intronic
CAediting_104111chr1_153640650_+ncRNA_intronic
CAediting_104112chr1_153640651_+ncRNA_intronic
CAediting_104113chr1_153640656_+ncRNA_intronic
CAediting_104114chr1_153640660_+ncRNA_intronic
CAediting_104115chr1_153640667_+ncRNA_intronic
CAediting_104116chr1_153640673_+ncRNA_intronic
CAediting_104117chr1_153640677_+ncRNA_intronic
CAediting_104118chr1_153640683_+ncRNA_intronic
CAediting_104119chr1_153640691_+ncRNA_intronic
CAediting_104120chr1_153640692_+ncRNA_intronic
CAediting_104121chr1_153640699_+ncRNA_intronic
CAediting_104122chr1_153640701_+ncRNA_intronic
CAediting_104123chr1_153640704_+ncRNA_intronic
CAediting_104124chr1_153640705_+ncRNA_intronic
CAediting_104125chr1_153640712_+ncRNA_intronic
CAediting_104126chr1_153640716_+ncRNA_intronic
CAediting_104127chr1_153640720_+ncRNA_intronic
CAediting_104128chr1_153640721_+ncRNA_intronic
CAediting_104129chr1_153640723_+ncRNA_intronic
CAediting_104130chr1_153640731_+ncRNA_intronic
CAediting_104131chr1_153640751_+ncRNA_intronic
CAediting_104132chr1_153640753_+ncRNA_intronic
CAediting_104133chr1_153640755_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_103986chr1_153636197_+SINEAluAluJr
CAediting_103987chr1_153637394_+SINEAluAluSg
CAediting_103988chr1_153637395_+SINEAluAluSg
CAediting_103989chr1_153637400_+SINEAluAluSg
CAediting_103990chr1_153637430_+SINEAluAluSg
CAediting_103991chr1_153637487_+SINEAluAluSg
CAediting_103992chr1_153637489_+SINEAluAluSg
CAediting_103993chr1_153637490_+SINEAluAluSg
CAediting_103994chr1_153637501_+SINEAluAluSg
CAediting_103995chr1_153637533_+SINEAluAluSg
CAediting_103996chr1_153637537_+SINEAluAluSg
CAediting_103997chr1_153637544_+SINEAluAluSg
CAediting_103998chr1_153637569_+SINEAluAluSg
CAediting_103999chr1_153637581_+SINEAluAluSg
CAediting_104000chr1_153637593_+SINEAluAluSg
CAediting_104001chr1_153637597_+SINEAluAluSg
CAediting_104002chr1_153637630_+SINEAluAluSg
CAediting_104003chr1_153637635_+SINEAluAluSg
CAediting_104004chr1_153637637_+SINEAluAluSg
CAediting_104005chr1_153637664_+SINEAluAluSg
CAediting_104006chr1_153638942_+SINEAluAluYm1
CAediting_104007chr1_153638945_+SINEAluAluYm1
CAediting_104008chr1_153638982_+SINEAluAluYm1
CAediting_104009chr1_153638998_+SINEAluAluYm1
CAediting_104010chr1_153639010_+SINEAluAluYm1
CAediting_104011chr1_153639021_+SINEAluAluYm1
CAediting_104012chr1_153639022_+SINEAluAluYm1
CAediting_104013chr1_153639063_+SINEAluAluYm1
CAediting_104014chr1_153639066_+SINEAluAluYm1
CAediting_104015chr1_153639080_+SINEAluAluYm1
CAediting_104016chr1_153639085_+SINEAluAluYm1
CAediting_104017chr1_153639141_+SINEAluAluYm1
CAediting_104018chr1_153639143_+SINEAluAluYm1
CAediting_104019chr1_153639155_+SINEAluAluYm1
CAediting_104020chr1_153639811_+SINEAluAluSx1
CAediting_104021chr1_153639831_+SINEAluAluSx1
CAediting_104022chr1_153639855_+SINEAluAluSx1
CAediting_104023chr1_153639861_+SINEAluAluSx1
CAediting_104024chr1_153639862_+SINEAluAluSx1
CAediting_104025chr1_153639866_+SINEAluAluSx1
CAediting_104026chr1_153639871_+SINEAluAluSx1
CAediting_104027chr1_153639891_+SINEAluAluSx1
CAediting_104028chr1_153639909_+SINEAluAluSx1
CAediting_104029chr1_153639913_+SINEAluAluSx1
CAediting_104030chr1_153639915_+SINEAluAluSx1
CAediting_104031chr1_153639931_+SINEAluAluSx1
CAediting_104032chr1_153639939_+SINEAluAluSx1
CAediting_104033chr1_153639954_+SINEAluAluSx1
CAediting_104034chr1_153639957_+SINEAluAluSx1
CAediting_104035chr1_153639961_+SINEAluAluSx1
CAediting_104036chr1_153639983_+SINEAluAluSx1
CAediting_104037chr1_153639985_+SINEAluAluSx1
CAediting_104038chr1_153639996_+SINEAluAluSx1
CAediting_104039chr1_153640003_+SINEAluAluSx1
CAediting_104040chr1_153640008_+SINEAluAluSx1
CAediting_104041chr1_153640009_+SINEAluAluSx1
CAediting_104042chr1_153640013_+SINEAluAluSx1
CAediting_104043chr1_153640034_+SINEAluAluSx1
CAediting_104044chr1_153640036_+SINEAluAluSx1
CAediting_104045chr1_153640043_+SINEAluAluSx1
CAediting_104046chr1_153640077_+DNAhAT-CharlieMER3
CAediting_104047chr1_153640121_+DNAhAT-CharlieMER3
CAediting_104048chr1_153640206_+DNAhAT-CharlieMER3
CAediting_104049chr1_153640211_+SINEAluAluSz6
CAediting_104050chr1_153640220_+SINEAluAluSz6
CAediting_104051chr1_153640225_+SINEAluAluSz6
CAediting_104052chr1_153640228_+SINEAluAluSz6
CAediting_104053chr1_153640242_+SINEAluAluSz6
CAediting_104054chr1_153640246_+SINEAluAluSz6
CAediting_104055chr1_153640252_+SINEAluAluSz6
CAediting_104056chr1_153640255_+SINEAluAluSz6
CAediting_104057chr1_153640260_+SINEAluAluSz6
CAediting_104058chr1_153640265_+SINEAluAluSz6
CAediting_104059chr1_153640268_+SINEAluAluSz6
CAediting_104060chr1_153640276_+SINEAluAluSz6
CAediting_104061chr1_153640288_+SINEAluAluSz6
CAediting_104062chr1_153640289_+SINEAluAluSz6
CAediting_104063chr1_153640297_+SINEAluAluSz6
CAediting_104064chr1_153640299_+SINEAluAluSz6
CAediting_104065chr1_153640310_+SINEAluAluSz6
CAediting_104066chr1_153640315_+SINEAluAluSz6
CAediting_104067chr1_153640316_+SINEAluAluSz6
CAediting_104068chr1_153640317_+SINEAluAluSz6
CAediting_104069chr1_153640319_+SINEAluAluSz6
CAediting_104070chr1_153640320_+SINEAluAluSz6
CAediting_104071chr1_153640322_+SINEAluAluSz6
CAediting_104072chr1_153640323_+SINEAluAluSz6
CAediting_104073chr1_153640334_+SINEAluAluSz6
CAediting_104074chr1_153640352_+SINEAluAluSz6
CAediting_104075chr1_153640353_+SINEAluAluSz6
CAediting_104076chr1_153640366_+SINEAluAluSz6
CAediting_104077chr1_153640381_+SINEAluAluSz6
CAediting_104078chr1_153640390_+SINEAluAluSz6
CAediting_104079chr1_153640394_+SINEAluAluSz6
CAediting_104080chr1_153640398_+SINEAluAluSz6
CAediting_104081chr1_153640414_+SINEAluAluSz6
CAediting_104082chr1_153640419_+SINEAluAluSz6
CAediting_104083chr1_153640426_+SINEAluAluSz6
CAediting_104084chr1_153640492_+DNAhAT-CharlieMER3
CAediting_104085chr1_153640518_+SINEAluAluSx
CAediting_104086chr1_153640524_+SINEAluAluSx
CAediting_104087chr1_153640525_+SINEAluAluSx
CAediting_104088chr1_153640530_+SINEAluAluSx
CAediting_104089chr1_153640533_+SINEAluAluSx
CAediting_104090chr1_153640551_+SINEAluAluSx
CAediting_104091chr1_153640565_+SINEAluAluSx
CAediting_104092chr1_153640570_+SINEAluAluSx
CAediting_104093chr1_153640573_+SINEAluAluSx
CAediting_104094chr1_153640578_+SINEAluAluSx
CAediting_104095chr1_153640579_+SINEAluAluSx
CAediting_104096chr1_153640581_+SINEAluAluSx
CAediting_104097chr1_153640584_+SINEAluAluSx
CAediting_104098chr1_153640593_+SINEAluAluSx
CAediting_104099chr1_153640594_+SINEAluAluSx
CAediting_104100chr1_153640596_+SINEAluAluSx
CAediting_104101chr1_153640599_+SINEAluAluSx
CAediting_104102chr1_153640601_+SINEAluAluSx
CAediting_104103chr1_153640602_+SINEAluAluSx
CAediting_104104chr1_153640618_+SINEAluAluSx
CAediting_104105chr1_153640620_+SINEAluAluSx
CAediting_104106chr1_153640621_+SINEAluAluSx
CAediting_104107chr1_153640622_+SINEAluAluSx
CAediting_104108chr1_153640625_+SINEAluAluSx
CAediting_104109chr1_153640636_+SINEAluAluSx
CAediting_104110chr1_153640641_+SINEAluAluSx
CAediting_104111chr1_153640650_+SINEAluAluSx
CAediting_104112chr1_153640651_+SINEAluAluSx
CAediting_104113chr1_153640656_+SINEAluAluSx
CAediting_104114chr1_153640660_+SINEAluAluSx
CAediting_104115chr1_153640667_+SINEAluAluSx
CAediting_104116chr1_153640673_+SINEAluAluSx
CAediting_104117chr1_153640677_+SINEAluAluSx
CAediting_104118chr1_153640683_+SINEAluAluSx
CAediting_104119chr1_153640691_+SINEAluAluSx
CAediting_104120chr1_153640692_+SINEAluAluSx
CAediting_104121chr1_153640699_+SINEAluAluSx
CAediting_104122chr1_153640701_+SINEAluAluSx
CAediting_104123chr1_153640704_+SINEAluAluSx
CAediting_104124chr1_153640705_+SINEAluAluSx
CAediting_104125chr1_153640712_+SINEAluAluSx
CAediting_104126chr1_153640716_+SINEAluAluSx
CAediting_104127chr1_153640720_+SINEAluAluSx
CAediting_104128chr1_153640721_+SINEAluAluSx
CAediting_104129chr1_153640723_+SINEAluAluSx
CAediting_104130chr1_153640731_+SINEAluAluSx
CAediting_104131chr1_153640751_+SINEAluAluSx
CAediting_104132chr1_153640753_+SINEAluAluSx
CAediting_104133chr1_153640755_+SINEAluAluSx

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RNA A-to-I editing events in the alternative splicing sites for CHTOP

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_104004chr1_153637637_+153637637:1536376455SS3+0iAGAGTGAGG2.6GGAGTGAGG0.98
IRCAediting_104004chr1_153637637_+153637637:1536376455SS3+0iAGAGTGAGG2.6GGAGTGAGG0.98

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000160679.11.CHTOP.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000160679.11.CHTOP.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHTOP

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
SKCM.CAediting_104112.ENSG00000160679.CHTOP.png
Soverview

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Protein coding region RNA A-to-I editings for CHTOP

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CHTOP

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000160679.11ENST00000368686hsa-miR-624-3p1536437071536437148mer-1a153643697153643714148-15.74
CAediting_1160181chr17_7017644_-ENSG00000160679.11ENST00000614256hsa-miR-195-3p1536458161536458238mer-1a153645803153645823150-11.46
CAediting_524911chr7_5495852_-ENSG00000160679.11ENST00000614256hsa-miR-589-3p1536456091536456168mer-1a153645593153645616158-17.57
CAediting_1160181chr17_7017644_-ENSG00000160679.11ENST00000368690hsa-miR-195-3p1536458161536458238mer-1a153645803153645823150-11.46
CAediting_524911chr7_5495852_-ENSG00000160679.11ENST00000368690hsa-miR-589-3p1536456091536456168mer-1a153645593153645616158-17.57
CAediting_1160181chr17_7017644_-ENSG00000160679.11ENST00000368694hsa-miR-195-3p1536458161536458238mer-1a153645803153645823150-11.46
CAediting_524911chr7_5495852_-ENSG00000160679.11ENST00000368694hsa-miR-589-3p1536456091536456168mer-1a153645593153645616158-17.57
CAediting_1160181chr17_7017644_-ENSG00000160679.11ENST00000403433hsa-miR-195-3p1536458161536458238mer-1a153645803153645823150-11.46
CAediting_524911chr7_5495852_-ENSG00000160679.11ENST00000403433hsa-miR-589-3p1536456091536456168mer-1a153645593153645616158-17.57
CAediting_1229413chr17_67471544_+ENSG00000160679.11ENST00000368686hsa-miR-548aa1536442831536442897mer-1a153644266153644289145-20.1
CAediting_1351755chr19_40282625_-ENSG00000160679.11ENST00000368686hsa-miR-6411536431791536431846mer153643160153643185157-23.72
CAediting_524911chr7_5495852_-ENSG00000160679.11ENST00000368686hsa-miR-589-3p1536438171536438237mer-1a153643799153643823153-32.94
CAediting_573001chr7_92204086_-ENSG00000160679.11ENST00000368686hsa-miR-1285-5p1536437941536438007mer-m8153643781153643801142-17.53
CAediting_468389chr6_31355314_-ENSG00000160679.11ENST00000368686hsa-miR-6891-5p1536432131536432197mer-m8153643202153643220149-15.97

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1368054chr19_46709310_-ENSG00000160679.11ENST00000614256hsa-miR-320e1536454001536454067mer-m8153645389153645407147-13.89
CAediting_1229413chr17_67471544_+ENSG00000160679.11ENST00000614256hsa-miR-548aa1536454731536454797mer-m8153645457153645480152-8.79
CAediting_1229415chr17_67471547_+ENSG00000160679.11ENST00000614256hsa-miR-548aa1536454731536454797mer-m8153645457153645480152-8.79
CAediting_1368054chr19_46709310_-ENSG00000160679.11ENST00000368690hsa-miR-320e1536454001536454067mer-m8153645389153645407147-13.89
CAediting_1229413chr17_67471544_+ENSG00000160679.11ENST00000368690hsa-miR-548aa1536454731536454797mer-m8153645457153645480152-8.79
CAediting_1368054chr19_46709310_-ENSG00000160679.11ENST00000368694hsa-miR-320e1536454001536454067mer-m8153645389153645407147-13.89
CAediting_1229413chr17_67471544_+ENSG00000160679.11ENST00000368694hsa-miR-548aa1536454731536454797mer-m8153645457153645480152-8.79
CAediting_1368054chr19_46709310_-ENSG00000160679.11ENST00000403433hsa-miR-320e1536454001536454067mer-m8153645389153645407147-13.89
CAediting_1229413chr17_67471544_+ENSG00000160679.11ENST00000403433hsa-miR-548aa1536454731536454797mer-m8153645457153645480152-8.79
CAediting_1351755chr19_40282625_-ENSG00000160679.11ENST00000368686hsa-miR-6411536425771536425837mer-m8153642561153642584140-10.77

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CHTOP

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000495554.1processed_transcriptSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_103987ENST00000495554.1chr1_153637394_+-779.35-778.15-799.35
CAediting_103988ENST00000495554.1chr1_153637395_+-778.85-778.15-799.35
CAediting_103989ENST00000495554.1chr1_153637400_+-777.75-778.15-799.35
CAediting_103990ENST00000495554.1chr1_153637430_+-778.15-778.15-799.35
CAediting_103991ENST00000495554.1chr1_153637487_+-779.75-778.15-799.35
CAediting_103992ENST00000495554.1chr1_153637489_+-780.35-778.15-799.35
CAediting_103993ENST00000495554.1chr1_153637490_+-782.45-778.15-799.35
CAediting_103994ENST00000495554.1chr1_153637501_+-777.85-778.15-799.35
CAediting_103995ENST00000495554.1chr1_153637533_+-777.45-778.15-799.35
CAediting_103996ENST00000495554.1chr1_153637537_+-777.85-778.15-799.35
CAediting_103997ENST00000495554.1chr1_153637544_+-778.75-778.15-799.35
CAediting_103998ENST00000495554.1chr1_153637569_+-780.65-778.15-799.35
CAediting_103999ENST00000495554.1chr1_153637581_+-782.45-778.15-799.35
CAediting_104000ENST00000495554.1chr1_153637593_+-779.65-778.15-799.35
CAediting_104001ENST00000495554.1chr1_153637597_+-779.05-778.15-799.35
CAediting_104002ENST00000495554.1chr1_153637630_+-778.65-778.15-799.35
CAediting_104003ENST00000495554.1chr1_153637635_+-778.95-778.15-799.35
CAediting_104004ENST00000495554.1chr1_153637637_+-781.35-778.15-799.35
CAediting_104005ENST00000495554.1chr1_153637664_+-782.45-778.15-799.35

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Relation with ADAR for CHTOP

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
ESCACAediting_104034chr1_153639957_+..0.01006794127090950.319503363190594..
BRCACAediting_104079chr1_153640394_+..0.01903579716867850.268461824080288..
LUSCCAediting_104090chr1_153640551_+....0.006567820226746030.375848902236594
BRCACAediting_104111chr1_153640650_+..0.02893582410884030.238456758878055..
OVCAediting_104112chr1_153640651_+0.002574636047830620.27855429667758....
LUADCAediting_104113chr1_153640656_+0.01930078947887760.283143202664915....

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Relation with cancer stages for CHTOP

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCApathologic_stageCAediting_104034chr1_153639957_+0.01500209348157870.320714599595422
LUADpathologic_stageCAediting_104112chr1_153640651_+0.0405639223163680.185709245042074

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Relation with survival for CHTOP

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
BRCACAediting_104079chr1_153640394_+0.001863428522963060.02620651.60765e-07

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RelatedDrugs for CHTOP

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CHTOP

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource