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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: GGA1 (CAeditome ID:26088)

Gene summary for GGA1

check button Gene summary
Gene informationGene symbol

GGA1

Gene ID

26088

Gene namegolgi associated, gamma adaptin ear containing, ARF binding protein 1
Synonyms-
Cytomap

22q13.1

Type of geneprotein-coding
DescriptionADP-ribosylation factor-binding protein GGA1ADP-ribosylation factor binding protein 1gamma-adaptin related protein 1golgi-localized, gamma ear-containing, ARF-binding protein 1
Modification date20210518
UniProtAcc

Q9UJY5

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
GGA1

GO:0006886

ADP-ribosylation factor-binding protein GGA1

15886016

GGA1

GO:0008104

ADP-ribosylation factor-binding protein GGA1

15886016

GGA1

GO:0034394

ADP-ribosylation factor-binding protein GGA1

27901063

GGA1

GO:0042147

ADP-ribosylation factor-binding protein GGA1

15886016

GGA1

GO:0043001

ADP-ribosylation factor-binding protein GGA1

27901063

GGA1

GO:0005654

ADP-ribosylation factor-binding protein GGA1

0000052

GGA1

GO:0005769

ADP-ribosylation factor-binding protein GGA1

15886016

GGA1

GO:0005794

ADP-ribosylation factor-binding protein GGA1

0000052

GGA1

GO:0043231

ADP-ribosylation factor-binding protein GGA1

0000052


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RNA A-to-I events for GGA1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000100083.17

check button RNA A-to-I editing events in Cancer.
CAediting_1479208(37610341, +), CAediting_1479209(37610383, +), CAediting_1479210(37610461, +), CAediting_1479211(37610473, +), CAediting_1479212(37610483, +), CAediting_1479213(37610521, +), CAediting_1479214(37610541, +), CAediting_1479215(37610550, +), CAediting_1479216(37610556, +), CAediting_1479217(37610603, +), CAediting_1479218(37610615, +), CAediting_1479219(37610640, +), CAediting_1479220(37610655, +), CAediting_1479221(37610664, +), CAediting_1479222(37610667, +), CAediting_1479223(37610840, +), CAediting_1479224(37610861, +), CAediting_1479225(37611874, +), CAediting_1479226(37611880, +), CAediting_1479227(37611896, +), CAediting_1479228(37611897, +), CAediting_1479229(37611902, +), CAediting_1479230(37611937, +), CAediting_1479231(37611956, +), CAediting_1479232(37611965, +), CAediting_1479233(37611974, +), CAediting_1479234(37611975, +), CAediting_1479235(37611976, +), CAediting_1479236(37611987, +), CAediting_1479237(37611990, +), CAediting_1479238(37611991, +), CAediting_1479239(37611992, +), CAediting_1479240(37611993, +), CAediting_1479241(37611994, +), CAediting_1479242(37611996, +), CAediting_1479243(37611998, +), CAediting_1479244(37611999, +), CAediting_1479245(37612007, +), CAediting_1479246(37612039, +), CAediting_1479247(37612052, +), CAediting_1479248(37612058, +), CAediting_1479249(37612059, +), CAediting_1479250(37612062, +), CAediting_1479251(37612065, +), CAediting_1479252(37612068, +), CAediting_1479253(37612076, +), CAediting_1479254(37612077, +), CAediting_1479255(37612081, +), CAediting_1479256(37612085, +), CAediting_1479257(37612092, +), CAediting_1479258(37612097, +), CAediting_1479259(37612106, +), CAediting_1479260(37612140, +), CAediting_1479261(37612144, +), CAediting_1479262(37612189, +), CAediting_1479263(37612193, +), CAediting_1479264(37612201, +), CAediting_1479265(37612209, +), CAediting_1479266(37612210, +), CAediting_1479267(37612215, +), CAediting_1479268(37612245, +), CAediting_1479269(37612277, +), CAediting_1479270(37612287, +), CAediting_1479271(37612351, +), CAediting_1479272(37612357, +), CAediting_1479273(37612392, +), CAediting_1479274(37612517, +), CAediting_1479275(37612583, +), CAediting_1479276(37612653, +), CAediting_1479277(37612659, +), CAediting_1479278(37612663, +), CAediting_1479279(37612686, +), CAediting_1479280(37612715, +), CAediting_1479281(37612724, +), CAediting_1479282(37612726, +), CAediting_1479283(37612754, +), CAediting_1479284(37612776, +), CAediting_1479285(37612777, +), CAediting_1479286(37613440, +), CAediting_1479287(37613444, +), CAediting_1479288(37613481, +), CAediting_1479289(37617572, +), CAediting_1479290(37617858, +), CAediting_1479291(37617866, +), CAediting_1479292(37617872, +), CAediting_1479293(37617909, +), CAediting_1479294(37617920, +), CAediting_1479295(37617921, +), CAediting_1479296(37617936, +), CAediting_1479297(37617938, +), CAediting_1479298(37617942, +), CAediting_1479299(37617951, +), CAediting_1479300(37617967, +), CAediting_1479301(37617969, +), CAediting_1479302(37617970, +), CAediting_1479303(37617971, +), CAediting_1479304(37617974, +), CAediting_1479305(37618002, +), CAediting_1479306(37618011, +), CAediting_1479307(37618024, +), CAediting_1479308(37618028, +), CAediting_1479309(37618042, +), CAediting_1479310(37618054, +), CAediting_1479311(37618061, +), CAediting_1479312(37618067, +), CAediting_1479313(37619195, +), CAediting_1479314(37619845, +), CAediting_1479315(37622675, +), CAediting_1479316(37622676, +), CAediting_1479317(37624172, +), CAediting_1479318(37624173, +), CAediting_1479319(37624396, +), CAediting_1479320(37624397, +), CAediting_1479321(37626039, +), CAediting_1479322(37626457, +), CAediting_1479323(37626884, +), CAediting_1479324(37626915, +), CAediting_1479325(37626929, +), CAediting_1479326(37626933, +), CAediting_1479327(37626952, +), CAediting_1479328(37626961, +), CAediting_1479329(37626962, +), CAediting_1479330(37626963, +), CAediting_1479331(37626976, +), CAediting_1479332(37626978, +), CAediting_1479333(37627003, +), CAediting_1479334(37627004, +), CAediting_1479335(37627014, +), CAediting_1479336(37627067, +), CAediting_1479337(37627090, +), CAediting_1479338(37627178, +), CAediting_1479339(37627181, +), CAediting_1479340(37627345, +), CAediting_1479341(37627901, +), CAediting_1479342(37627927, +), CAediting_1479343(37627944, +), CAediting_1479344(37627956, +), CAediting_1479345(37627963, +), CAediting_1479346(37627968, +), CAediting_1479347(37627979, +), CAediting_1479348(37627984, +), CAediting_1479349(37628007, +), CAediting_1479350(37628010, +), CAediting_1479351(37628024, +), CAediting_1479352(37628045, +), CAediting_1479353(37628075, +), CAediting_1479354(37628080, +), CAediting_1479355(37628089, +), CAediting_1479356(37628090, +), CAediting_1479357(37628091, +), CAediting_1479358(37628102, +), CAediting_1479359(37628108, +), CAediting_1479360(37628154, +), CAediting_1479361(37628159, +), CAediting_1479362(37628209, +), CAediting_1479363(37628218, +), CAediting_1479364(37628221, +), CAediting_1479365(37628231, +), CAediting_1479366(37628315, +), CAediting_1479367(37628324, +), CAediting_1479368(37628325, +), CAediting_1479369(37628377, +), CAediting_1479370(37628384, +), CAediting_1479371(37628399, +), CAediting_1479372(37630666, +), CAediting_1479373(37630788, +),

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RNA editing positional annotations for GGA1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1479208chr22_37610341_+ncRNA_exonic
CAediting_1479209chr22_37610383_+ncRNA_exonic
CAediting_1479210chr22_37610461_+ncRNA_exonic
CAediting_1479211chr22_37610473_+ncRNA_exonic
CAediting_1479212chr22_37610483_+ncRNA_exonic
CAediting_1479213chr22_37610521_+ncRNA_intronic
CAediting_1479214chr22_37610541_+ncRNA_intronic
CAediting_1479215chr22_37610550_+ncRNA_intronic
CAediting_1479216chr22_37610556_+ncRNA_intronic
CAediting_1479217chr22_37610603_+ncRNA_exonic
CAediting_1479218chr22_37610615_+ncRNA_exonic
CAediting_1479219chr22_37610640_+ncRNA_exonic
CAediting_1479220chr22_37610655_+ncRNA_exonic
CAediting_1479221chr22_37610664_+ncRNA_exonic
CAediting_1479222chr22_37610667_+ncRNA_exonic
CAediting_1479223chr22_37610840_+ncRNA_intronic
CAediting_1479224chr22_37610861_+ncRNA_intronic
CAediting_1479225chr22_37611874_+ncRNA_intronic
CAediting_1479226chr22_37611880_+ncRNA_intronic
CAediting_1479227chr22_37611896_+ncRNA_intronic
CAediting_1479228chr22_37611897_+ncRNA_intronic
CAediting_1479229chr22_37611902_+ncRNA_intronic
CAediting_1479230chr22_37611937_+ncRNA_intronic
CAediting_1479231chr22_37611956_+ncRNA_intronic
CAediting_1479232chr22_37611965_+ncRNA_intronic
CAediting_1479233chr22_37611974_+ncRNA_intronic
CAediting_1479234chr22_37611975_+ncRNA_intronic
CAediting_1479235chr22_37611976_+ncRNA_intronic
CAediting_1479236chr22_37611987_+ncRNA_intronic
CAediting_1479237chr22_37611990_+ncRNA_intronic
CAediting_1479238chr22_37611991_+ncRNA_intronic
CAediting_1479239chr22_37611992_+ncRNA_intronic
CAediting_1479240chr22_37611993_+ncRNA_intronic
CAediting_1479241chr22_37611994_+ncRNA_intronic
CAediting_1479242chr22_37611996_+ncRNA_intronic
CAediting_1479243chr22_37611998_+ncRNA_intronic
CAediting_1479244chr22_37611999_+ncRNA_intronic
CAediting_1479245chr22_37612007_+ncRNA_intronic
CAediting_1479246chr22_37612039_+ncRNA_intronic
CAediting_1479247chr22_37612052_+ncRNA_intronic
CAediting_1479248chr22_37612058_+ncRNA_intronic
CAediting_1479249chr22_37612059_+ncRNA_intronic
CAediting_1479250chr22_37612062_+ncRNA_intronic
CAediting_1479251chr22_37612065_+ncRNA_intronic
CAediting_1479252chr22_37612068_+ncRNA_intronic
CAediting_1479253chr22_37612076_+ncRNA_intronic
CAediting_1479254chr22_37612077_+ncRNA_intronic
CAediting_1479255chr22_37612081_+ncRNA_intronic
CAediting_1479256chr22_37612085_+ncRNA_intronic
CAediting_1479257chr22_37612092_+ncRNA_intronic
CAediting_1479258chr22_37612097_+ncRNA_intronic
CAediting_1479259chr22_37612106_+ncRNA_intronic
CAediting_1479260chr22_37612140_+ncRNA_intronic
CAediting_1479261chr22_37612144_+ncRNA_intronic
CAediting_1479262chr22_37612189_+ncRNA_intronic
CAediting_1479263chr22_37612193_+ncRNA_intronic
CAediting_1479264chr22_37612201_+ncRNA_intronic
CAediting_1479265chr22_37612209_+ncRNA_intronic
CAediting_1479266chr22_37612210_+ncRNA_intronic
CAediting_1479267chr22_37612215_+ncRNA_intronic
CAediting_1479268chr22_37612245_+ncRNA_intronic
CAediting_1479269chr22_37612277_+ncRNA_intronic
CAediting_1479270chr22_37612287_+ncRNA_intronic
CAediting_1479271chr22_37612351_+ncRNA_intronic
CAediting_1479272chr22_37612357_+ncRNA_intronic
CAediting_1479273chr22_37612392_+ncRNA_intronic
CAediting_1479274chr22_37612517_+ncRNA_intronic
CAediting_1479275chr22_37612583_+ncRNA_intronic
CAediting_1479276chr22_37612653_+ncRNA_intronic
CAediting_1479277chr22_37612659_+ncRNA_intronic
CAediting_1479278chr22_37612663_+ncRNA_intronic
CAediting_1479279chr22_37612686_+ncRNA_intronic
CAediting_1479280chr22_37612715_+ncRNA_intronic
CAediting_1479281chr22_37612724_+ncRNA_intronic
CAediting_1479282chr22_37612726_+ncRNA_intronic
CAediting_1479283chr22_37612754_+ncRNA_intronic
CAediting_1479284chr22_37612776_+ncRNA_intronic
CAediting_1479285chr22_37612777_+ncRNA_intronic
CAediting_1479286chr22_37613440_+ncRNA_intronic
CAediting_1479287chr22_37613444_+ncRNA_intronic
CAediting_1479288chr22_37613481_+ncRNA_intronic
CAediting_1479289chr22_37617572_+ncRNA_exonic
CAediting_1479290chr22_37617858_+ncRNA_exonic
CAediting_1479291chr22_37617866_+ncRNA_exonic
CAediting_1479292chr22_37617872_+ncRNA_exonic
CAediting_1479293chr22_37617909_+ncRNA_exonic
CAediting_1479294chr22_37617920_+ncRNA_exonic
CAediting_1479295chr22_37617921_+ncRNA_exonic
CAediting_1479296chr22_37617936_+ncRNA_exonic
CAediting_1479297chr22_37617938_+ncRNA_exonic
CAediting_1479298chr22_37617942_+ncRNA_exonic
CAediting_1479299chr22_37617951_+ncRNA_exonic
CAediting_1479300chr22_37617967_+ncRNA_exonic
CAediting_1479301chr22_37617969_+ncRNA_exonic
CAediting_1479302chr22_37617970_+ncRNA_exonic
CAediting_1479303chr22_37617971_+ncRNA_exonic
CAediting_1479304chr22_37617974_+ncRNA_exonic
CAediting_1479305chr22_37618002_+ncRNA_exonic
CAediting_1479306chr22_37618011_+ncRNA_exonic
CAediting_1479307chr22_37618024_+ncRNA_exonic
CAediting_1479308chr22_37618028_+ncRNA_exonic
CAediting_1479309chr22_37618042_+ncRNA_exonic
CAediting_1479310chr22_37618054_+ncRNA_exonic
CAediting_1479311chr22_37618061_+ncRNA_exonic
CAediting_1479312chr22_37618067_+ncRNA_exonic
CAediting_1479313chr22_37619195_+ncRNA_intronic
CAediting_1479314chr22_37619845_+ncRNA_exonic
CAediting_1479315chr22_37622675_+ncRNA_intronic
CAediting_1479316chr22_37622676_+ncRNA_intronic
CAediting_1479317chr22_37624172_+ncRNA_exonic
CAediting_1479318chr22_37624173_+ncRNA_exonic
CAediting_1479319chr22_37624396_+ncRNA_exonic
CAediting_1479320chr22_37624397_+ncRNA_exonic
CAediting_1479321chr22_37626039_+ncRNA_exonic
CAediting_1479322chr22_37626457_+ncRNA_exonic
CAediting_1479323chr22_37626884_+ncRNA_exonic
CAediting_1479324chr22_37626915_+ncRNA_exonic
CAediting_1479325chr22_37626929_+ncRNA_exonic
CAediting_1479326chr22_37626933_+ncRNA_exonic
CAediting_1479327chr22_37626952_+ncRNA_exonic
CAediting_1479328chr22_37626961_+ncRNA_exonic
CAediting_1479329chr22_37626962_+ncRNA_exonic
CAediting_1479330chr22_37626963_+ncRNA_exonic
CAediting_1479331chr22_37626976_+ncRNA_exonic
CAediting_1479332chr22_37626978_+ncRNA_exonic
CAediting_1479333chr22_37627003_+ncRNA_exonic
CAediting_1479334chr22_37627004_+ncRNA_exonic
CAediting_1479335chr22_37627014_+ncRNA_exonic
CAediting_1479336chr22_37627067_+ncRNA_exonic
CAediting_1479337chr22_37627090_+ncRNA_exonic
CAediting_1479338chr22_37627178_+intronic
CAediting_1479339chr22_37627181_+intronic
CAediting_1479340chr22_37627345_+intronic
CAediting_1479341chr22_37627901_+intronic
CAediting_1479342chr22_37627927_+intronic
CAediting_1479343chr22_37627944_+intronic
CAediting_1479344chr22_37627956_+intronic
CAediting_1479345chr22_37627963_+intronic
CAediting_1479346chr22_37627968_+intronic
CAediting_1479347chr22_37627979_+intronic
CAediting_1479348chr22_37627984_+intronic
CAediting_1479349chr22_37628007_+intronic
CAediting_1479350chr22_37628010_+intronic
CAediting_1479351chr22_37628024_+intronic
CAediting_1479352chr22_37628045_+intronic
CAediting_1479353chr22_37628075_+intronic
CAediting_1479354chr22_37628080_+intronic
CAediting_1479355chr22_37628089_+intronic
CAediting_1479356chr22_37628090_+intronic
CAediting_1479357chr22_37628091_+intronic
CAediting_1479358chr22_37628102_+intronic
CAediting_1479359chr22_37628108_+intronic
CAediting_1479360chr22_37628154_+intronic
CAediting_1479361chr22_37628159_+intronic
CAediting_1479362chr22_37628209_+intronic
CAediting_1479363chr22_37628218_+intronic
CAediting_1479364chr22_37628221_+intronic
CAediting_1479365chr22_37628231_+intronic
CAediting_1479366chr22_37628315_+intronic
CAediting_1479367chr22_37628324_+intronic
CAediting_1479368chr22_37628325_+intronic
CAediting_1479369chr22_37628377_+intronic
CAediting_1479370chr22_37628384_+intronic
CAediting_1479371chr22_37628399_+intronic
CAediting_1479372chr22_37630666_+intronic
CAediting_1479373chr22_37630788_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1479209chr22_37610383_+SINEAluAluSq2
CAediting_1479210chr22_37610461_+SINEAluAluSq2
CAediting_1479211chr22_37610473_+SINEAluAluSq2
CAediting_1479212chr22_37610483_+SINEAluAluSq2
CAediting_1479213chr22_37610521_+SINEAluAluSq2
CAediting_1479214chr22_37610541_+SINEAluAluSq2
CAediting_1479215chr22_37610550_+SINEAluAluSq2
CAediting_1479216chr22_37610556_+SINEAluAluSq2
CAediting_1479217chr22_37610603_+SINEAluAluSq2
CAediting_1479218chr22_37610615_+SINEAluAluSq2
CAediting_1479219chr22_37610640_+SINEAluAlu
CAediting_1479220chr22_37610655_+SINEAluAlu
CAediting_1479221chr22_37610664_+SINEAluAlu
CAediting_1479222chr22_37610667_+SINEAluAlu
CAediting_1479225chr22_37611874_+SINEAluAluSx1
CAediting_1479226chr22_37611880_+SINEAluAluSx1
CAediting_1479227chr22_37611896_+SINEAluAluSx1
CAediting_1479228chr22_37611897_+SINEAluAluSx1
CAediting_1479229chr22_37611902_+SINEAluAluSx1
CAediting_1479230chr22_37611937_+SINEAluAluSx1
CAediting_1479231chr22_37611956_+SINEAluAluSx1
CAediting_1479232chr22_37611965_+SINEAluAluSx1
CAediting_1479233chr22_37611974_+SINEAluAluSx1
CAediting_1479234chr22_37611975_+SINEAluAluSx1
CAediting_1479235chr22_37611976_+SINEAluAluSx1
CAediting_1479236chr22_37611987_+SINEAluAluSx1
CAediting_1479237chr22_37611990_+SINEAluAluSx1
CAediting_1479238chr22_37611991_+SINEAluAluSx1
CAediting_1479239chr22_37611992_+SINEAluAluSx1
CAediting_1479240chr22_37611993_+SINEAluAluSx1
CAediting_1479241chr22_37611994_+SINEAluAluSx1
CAediting_1479242chr22_37611996_+SINEAluAluSx1
CAediting_1479243chr22_37611998_+SINEAluAluSx1
CAediting_1479244chr22_37611999_+SINEAluAluSx1
CAediting_1479245chr22_37612007_+SINEAluAluSx1
CAediting_1479246chr22_37612039_+SINEAluAluSx1
CAediting_1479247chr22_37612052_+SINEAluAluSx1
CAediting_1479248chr22_37612058_+SINEAluAluSx1
CAediting_1479249chr22_37612059_+SINEAluAluSx1
CAediting_1479250chr22_37612062_+SINEAluAluSx1
CAediting_1479251chr22_37612065_+SINEAluAluSx1
CAediting_1479252chr22_37612068_+SINEAluAluSx1
CAediting_1479253chr22_37612076_+SINEAluAluSx1
CAediting_1479254chr22_37612077_+SINEAluAluSx1
CAediting_1479255chr22_37612081_+SINEAluAluSx1
CAediting_1479256chr22_37612085_+SINEAluAluSx1
CAediting_1479257chr22_37612092_+SINEAluAluSx1
CAediting_1479258chr22_37612097_+SINEAluAluSx1
CAediting_1479259chr22_37612106_+SINEAluAluSx1
CAediting_1479260chr22_37612140_+SINEAluAluSx1
CAediting_1479261chr22_37612144_+SINEAluAluSx1
CAediting_1479262chr22_37612189_+SINEAluAluY
CAediting_1479263chr22_37612193_+SINEAluAluY
CAediting_1479264chr22_37612201_+SINEAluAluY
CAediting_1479265chr22_37612209_+SINEAluAluY
CAediting_1479266chr22_37612210_+SINEAluAluY
CAediting_1479267chr22_37612215_+SINEAluAluY
CAediting_1479268chr22_37612245_+SINEAluAluY
CAediting_1479269chr22_37612277_+SINEAluAluY
CAediting_1479270chr22_37612287_+SINEAluAluY
CAediting_1479271chr22_37612351_+SINEAluAluY
CAediting_1479272chr22_37612357_+SINEAluAluY
CAediting_1479273chr22_37612392_+SINEAluAluY
CAediting_1479274chr22_37612517_+SINEAluAluY
CAediting_1479275chr22_37612583_+SINEAluAluY
CAediting_1479276chr22_37612653_+SINEAluAluY
CAediting_1479277chr22_37612659_+SINEAluAluY
CAediting_1479278chr22_37612663_+SINEAluAluY
CAediting_1479279chr22_37612686_+SINEAluAluY
CAediting_1479280chr22_37612715_+SINEAluAluY
CAediting_1479281chr22_37612724_+SINEAluAluY
CAediting_1479282chr22_37612726_+SINEAluAluY
CAediting_1479283chr22_37612754_+SINEAluAluY
CAediting_1479284chr22_37612776_+SINEAluAluY
CAediting_1479285chr22_37612777_+SINEAluAluY
CAediting_1479286chr22_37613440_+SINEAluAluY
CAediting_1479287chr22_37613444_+SINEAluAluY
CAediting_1479288chr22_37613481_+SINEAluAluY
CAediting_1479289chr22_37617572_+SINEAluFRAM
CAediting_1479290chr22_37617858_+SINEAluAluSq
CAediting_1479291chr22_37617866_+SINEAluAluSq
CAediting_1479292chr22_37617872_+SINEAluAluSq
CAediting_1479293chr22_37617909_+SINEAluAluSq
CAediting_1479294chr22_37617920_+SINEAluAluSq
CAediting_1479295chr22_37617921_+SINEAluAluSq
CAediting_1479296chr22_37617936_+SINEAluAluSq
CAediting_1479297chr22_37617938_+SINEAluAluSq
CAediting_1479298chr22_37617942_+SINEAluAluSq
CAediting_1479299chr22_37617951_+SINEAluAluSq
CAediting_1479300chr22_37617967_+SINEAluAluSq
CAediting_1479301chr22_37617969_+SINEAluAluSq
CAediting_1479302chr22_37617970_+SINEAluAluSq
CAediting_1479303chr22_37617971_+SINEAluAluSq
CAediting_1479304chr22_37617974_+SINEAluAluSq
CAediting_1479305chr22_37618002_+SINEAluAluSq
CAediting_1479306chr22_37618011_+SINEAluAluSq
CAediting_1479307chr22_37618024_+SINEAluAluSq
CAediting_1479308chr22_37618028_+SINEAluAluSq
CAediting_1479309chr22_37618042_+SINEAluAluSq
CAediting_1479310chr22_37618054_+SINEAluAluSq
CAediting_1479311chr22_37618061_+SINEAluAluSq
CAediting_1479312chr22_37618067_+SINEAluAluSq
CAediting_1479313chr22_37619195_+SINEAluAluSx3
CAediting_1479315chr22_37622675_+SINEAluAluJo
CAediting_1479316chr22_37622676_+SINEAluAluJo
CAediting_1479319chr22_37624396_+SINEAluFLAM_C
CAediting_1479320chr22_37624397_+SINEAluFLAM_C
CAediting_1479323chr22_37626884_+SINEMIRMIR
CAediting_1479324chr22_37626915_+SINEAluAluSz
CAediting_1479325chr22_37626929_+SINEAluAluSz
CAediting_1479326chr22_37626933_+SINEAluAluSz
CAediting_1479327chr22_37626952_+SINEAluAluSz
CAediting_1479328chr22_37626961_+SINEAluAluSz
CAediting_1479329chr22_37626962_+SINEAluAluSz
CAediting_1479330chr22_37626963_+SINEAluAluSz
CAediting_1479331chr22_37626976_+SINEAluAluSz
CAediting_1479332chr22_37626978_+SINEAluAluSz
CAediting_1479333chr22_37627003_+SINEAluAluSz
CAediting_1479334chr22_37627004_+SINEAluAluSz
CAediting_1479335chr22_37627014_+SINEAluAluSz
CAediting_1479336chr22_37627067_+SINEAluAluSz
CAediting_1479337chr22_37627090_+SINEAluAluSz
CAediting_1479338chr22_37627178_+SINEAluAluSz
CAediting_1479339chr22_37627181_+SINEAluAluSz
CAediting_1479342chr22_37627927_+SINEAluAluJb
CAediting_1479343chr22_37627944_+SINEAluAluJb
CAediting_1479344chr22_37627956_+SINEAluAluJb
CAediting_1479345chr22_37627963_+SINEAluAluJb
CAediting_1479346chr22_37627968_+SINEAluAluJb
CAediting_1479347chr22_37627979_+SINEAluAluJb
CAediting_1479348chr22_37627984_+SINEAluAluJb
CAediting_1479349chr22_37628007_+SINEAluAluJb
CAediting_1479350chr22_37628010_+SINEAluAluJb
CAediting_1479351chr22_37628024_+SINEAluAluJb
CAediting_1479352chr22_37628045_+SINEAluAluJb
CAediting_1479353chr22_37628075_+SINEAluAluJb
CAediting_1479354chr22_37628080_+SINEAluAluJb
CAediting_1479355chr22_37628089_+SINEAluAluJb
CAediting_1479356chr22_37628090_+SINEAluAluJb
CAediting_1479357chr22_37628091_+SINEAluAluJb
CAediting_1479358chr22_37628102_+SINEAluAluJb
CAediting_1479359chr22_37628108_+SINEAluAluJb
CAediting_1479360chr22_37628154_+SINEAluAluJr
CAediting_1479361chr22_37628159_+SINEAluAluJr
CAediting_1479362chr22_37628209_+SINEAluAluJr
CAediting_1479363chr22_37628218_+SINEAluAluJr
CAediting_1479364chr22_37628221_+SINEAluAluJr
CAediting_1479365chr22_37628231_+SINEAluAluJr
CAediting_1479366chr22_37628315_+SINEAluAluJr
CAediting_1479367chr22_37628324_+SINEAluAluJr
CAediting_1479368chr22_37628325_+SINEAluAluJr
CAediting_1479369chr22_37628377_+SINEMIRMIR
CAediting_1479370chr22_37628384_+SINEMIRMIR
CAediting_1479371chr22_37628399_+SINEMIRMIR
CAediting_1479372chr22_37630666_+SINEAluAluSz
CAediting_1479373chr22_37630788_+SINEAluAluSz

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RNA A-to-I editing events in the alternative splicing sites for GGA1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_1479216chr22_37610556_+37610556:376105783SS0+20iATCTCGAACTCCTGACCTCAGGT-11.6GTCTCGAACTCCTGACCTCAGGT-11.52

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000100083.17.GGA1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000100083.17.GGA1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GGA1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
LAML.CAediting_1479349.ENSG00000100083.GGA1.png
Soverview
LGG.CAediting_1479226.ENSG00000100083.GGA1.png
Soverview
STAD.CAediting_1479349.ENSG00000100083.GGA1.png
Soverview

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Protein coding region RNA A-to-I editings for GGA1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for GGA1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1479314chr22_37619845_+ENSG00000100083.17ENST00000405147hsa-miR-453037619839376198457mer-m83761982737619846145.00-24.43
CAediting_1479314chr22_37619845_+ENSG00000100083.17ENST00000405147hsa-miR-4713-5p37619843376198497mer-m83761982937619850162.00-18.17
CAediting_1479314chr22_37619845_+ENSG00000100083.17ENST00000405147hsa-miR-797737619841376198477mer-m83761983237619848146.00-16.09

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1479314chr22_37619845_+ENSG00000100083.17ENST00000405147hsa-miR-4524a-5p37619838376198447mer-m83761982637619845153-13.49
CAediting_1479314chr22_37619845_+ENSG00000100083.17ENST00000405147hsa-miR-4524b-5p37619838376198447mer-m83761982337619845148-13.53

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846604chr11_93733708_-ENSG00000100083.17ENST00000343632hsa-miR-1304-3p37633385376333917mer-m83763337137633392152-22.52
CAediting_846604chr11_93733708_-ENSG00000100083.17ENST00000325180hsa-miR-1304-3p37633385376333917mer-m83763337137633392152-22.52
CAediting_846604chr11_93733708_-ENSG00000100083.17ENST00000406772hsa-miR-1304-3p37633385376333917mer-m83763337137633392152-22.52
CAediting_86358chr1_109598906_+ENSG00000100083.17ENST00000405147hsa-miR-197-5p37619877376198837mer-m83761986237619884152-28.03
CAediting_396018chr5_1062918_-ENSG00000100083.17ENST00000343632hsa-miR-463537632852376328587mer-m83763283937632859146-15.95
CAediting_604450chr7_133034877_-ENSG00000100083.17ENST00000343632hsa-miR-365437632755376327617mer-m83763274637632762147-20.56
CAediting_396018chr5_1062918_-ENSG00000100083.17ENST00000325180hsa-miR-463537632852376328587mer-m83763283937632859146-15.95
CAediting_604450chr7_133034877_-ENSG00000100083.17ENST00000325180hsa-miR-365437632755376327617mer-m83763274637632762147-20.56
CAediting_396018chr5_1062918_-ENSG00000100083.17ENST00000406772hsa-miR-463537632852376328587mer-m83763283937632859146-15.95
CAediting_604450chr7_133034877_-ENSG00000100083.17ENST00000406772hsa-miR-365437632755376327617mer-m83763274637632762147-20.56
CAediting_468389chr6_31355314_-ENSG00000100083.17ENST00000343632hsa-miR-6891-5p37633154376331607mer-m83763314337633161140-23.52
CAediting_468389chr6_31355314_-ENSG00000100083.17ENST00000325180hsa-miR-6891-5p37633154376331607mer-m83763314337633161140-23.52
CAediting_468389chr6_31355314_-ENSG00000100083.17ENST00000406772hsa-miR-6891-5p37633154376331607mer-m83763314337633161140-23.52

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GGA1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for GGA1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_1479226chr22_37611880_+....0.004960308643838760.36718021735794
OVCAediting_1479255chr22_37612081_+....0.0229979762783290.29078240262733
OVCAediting_1479263chr22_37612193_+0.03555273802161970.298014648624475....

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Relation with cancer stages for GGA1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for GGA1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LGGCAediting_1479225chr22_37611874_+0.01190754492798540.0248292362929000

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RelatedDrugs for GGA1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GGA1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource