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Editing gene: PTCD1 (CAeditome ID:26024)

Gene summary for PTCD1

Gene summary

Gene information	Gene symbol	PTCD1
	Gene ID	26024
	Gene name	pentatricopeptide repeat domain 1
	Synonyms	-
	Cytomap	7q22.1
	Type of gene	protein-coding
	Description	pentatricopeptide repeat-containing protein 1, mitochondrial
	Modification date	20210518
	UniProtAcc	O75127
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
PTCD1	GO:0000049	Pentatricopeptide repeat-containing protein 1, mitochondrial	19651879
PTCD1	GO:0042780	Pentatricopeptide repeat-containing protein 1, mitochondrial	21857155
PTCD1	GO:0005739	Pentatricopeptide repeat-containing protein 1, mitochondrial	19651879

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RNA A-to-I events for PTCD1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000106246.16

RNA A-to-I editing events in Cancer.

CAediting_577814(99420839, -), CAediting_577815(99420864, -), CAediting_577816(99426391, -), CAediting_577817(99430988, -), CAediting_577818(99430989, -), CAediting_577819(99430992, -), CAediting_577820(99431053, -), CAediting_577821(99431188, -), CAediting_577822(99431232, -), CAediting_577823(99431240, -), CAediting_577824(99431241, -), CAediting_577825(99431258, -), CAediting_577826(99431268, -), CAediting_577827(99431401, -), CAediting_577828(99431485, -), CAediting_577829(99431491, -), CAediting_577830(99431497, -), CAediting_577831(99431498, -), CAediting_577832(99431561, -), CAediting_577833(99431570, -), CAediting_577834(99431609, -), CAediting_577835(99431619, -), CAediting_577836(99431629, -), CAediting_577837(99431641, -), CAediting_577838(99431646, -), CAediting_577839(99432937, -), CAediting_577840(99432997, -), CAediting_577841(99435517, -), CAediting_577842(99436460, -), CAediting_577843(99436466, -), CAediting_577844(99436467, -), CAediting_577845(99436471, -), CAediting_577846(99437098, -), CAediting_577847(99437387, -), CAediting_577848(99437416, -), CAediting_577849(99437443, -), CAediting_577850(99437453, -), CAediting_577851(99437469, -), CAediting_577852(99437472, -), CAediting_577853(99437474, -), CAediting_577854(99437476, -), CAediting_577855(99438367, -), CAediting_577856(99438391, -), CAediting_577857(99459548, -), CAediting_577858(99459556, -), CAediting_577859(99459606, -), CAediting_577860(99459626, -), CAediting_577861(99461299, -), CAediting_577862(99461302, -), CAediting_577863(99461312, -), CAediting_577864(99461321, -), CAediting_577865(99461325, -), CAediting_577866(99461331, -), CAediting_577867(99461334, -), CAediting_577868(99461342, -), CAediting_577869(99461348, -), CAediting_577870(99461354, -), CAediting_577871(99461374, -), CAediting_577872(99461578, -), CAediting_577873(99461579, -), CAediting_577874(99461601, -), CAediting_577875(99461626, -), CAediting_577876(99461627, -), CAediting_577877(99461639, -), CAediting_577878(99461641, -), CAediting_577879(99461711, -), CAediting_577880(99461721, -), CAediting_577881(99461724, -), CAediting_577882(99461751, -), CAediting_577883(99461782, -), CAediting_577884(99461786, -), CAediting_577885(99461790, -), CAediting_577886(99461804, -), CAediting_577887(99461861, -), CAediting_577888(99461862, -), CAediting_577889(99461890, -), CAediting_577890(99461930, -), CAediting_577891(99461931, -), CAediting_577892(99462196, -), CAediting_577893(99462346, -), CAediting_577894(99462352, -), CAediting_577895(99462356, -), CAediting_577896(99462392, -), CAediting_577897(99462405, -), CAediting_577898(99462416, -), CAediting_577899(99462421, -), CAediting_577900(99462520, -), CAediting_577901(99462583, -), CAediting_577902(99462607, -), CAediting_577903(99462609, -), CAediting_577904(99462645, -), CAediting_577905(99462663, -), CAediting_577906(99462675, -), CAediting_577907(99462692, -), CAediting_577908(99462699, -), CAediting_577909(99462712, -), CAediting_577910(99462713, -), CAediting_577911(99462728, -), CAediting_577912(99462731, -), CAediting_577913(99462978, -), CAediting_577914(99463658, -), CAediting_577915(99463668, -), CAediting_577916(99463693, -), CAediting_577917(99463694, -), CAediting_577918(99463787, -), CAediting_577919(99463791, -), CAediting_577920(99464419, -), CAediting_577921(99464429, -), CAediting_577922(99464474, -), CAediting_577923(99464496, -), CAediting_577924(99464695, -), CAediting_577925(99464709, -), CAediting_577926(99464758, -), CAediting_577927(99464772, -), CAediting_577928(99464859, -), CAediting_577929(99464860, -), CAediting_577930(99464868, -), CAediting_577931(99464884, -), CAediting_577932(99464892, -), CAediting_577933(99464924, -), CAediting_577934(99464934, -), CAediting_577935(99464951, -), CAediting_577936(99465885, -),

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RNA editing positional annotations for PTCD1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_577814	chr7_99420839_-	intronic
CAediting_577815	chr7_99420864_-	intronic
CAediting_577816	chr7_99426391_-	intronic
CAediting_577817	chr7_99430988_-	ncRNA_intronic
CAediting_577818	chr7_99430989_-	ncRNA_intronic
CAediting_577819	chr7_99430992_-	ncRNA_intronic
CAediting_577820	chr7_99431053_-	ncRNA_intronic
CAediting_577821	chr7_99431188_-	ncRNA_intronic
CAediting_577822	chr7_99431232_-	ncRNA_intronic
CAediting_577823	chr7_99431240_-	ncRNA_intronic
CAediting_577824	chr7_99431241_-	ncRNA_intronic
CAediting_577825	chr7_99431258_-	ncRNA_intronic
CAediting_577826	chr7_99431268_-	ncRNA_intronic
CAediting_577827	chr7_99431401_-	ncRNA_intronic
CAediting_577828	chr7_99431485_-	ncRNA_intronic
CAediting_577829	chr7_99431491_-	ncRNA_intronic
CAediting_577830	chr7_99431497_-	ncRNA_intronic
CAediting_577831	chr7_99431498_-	ncRNA_intronic
CAediting_577832	chr7_99431561_-	ncRNA_intronic
CAediting_577833	chr7_99431570_-	ncRNA_intronic
CAediting_577834	chr7_99431609_-	ncRNA_intronic
CAediting_577835	chr7_99431619_-	ncRNA_intronic
CAediting_577836	chr7_99431629_-	ncRNA_intronic
CAediting_577837	chr7_99431641_-	ncRNA_intronic
CAediting_577838	chr7_99431646_-	ncRNA_intronic
CAediting_577839	chr7_99432937_-	ncRNA_exonic
CAediting_577840	chr7_99432997_-	ncRNA_intronic
CAediting_577841	chr7_99435517_-	ncRNA_intronic
CAediting_577842	chr7_99436460_-	ncRNA_intronic
CAediting_577843	chr7_99436466_-	ncRNA_intronic
CAediting_577844	chr7_99436467_-	ncRNA_intronic
CAediting_577845	chr7_99436471_-	ncRNA_intronic
CAediting_577846	chr7_99437098_-	ncRNA_intronic
CAediting_577847	chr7_99437387_-	ncRNA_intronic
CAediting_577848	chr7_99437416_-	ncRNA_intronic
CAediting_577849	chr7_99437443_-	ncRNA_intronic
CAediting_577850	chr7_99437453_-	ncRNA_intronic
CAediting_577851	chr7_99437469_-	ncRNA_intronic
CAediting_577852	chr7_99437472_-	ncRNA_intronic
CAediting_577853	chr7_99437474_-	ncRNA_intronic
CAediting_577854	chr7_99437476_-	ncRNA_intronic
CAediting_577855	chr7_99438367_-	ncRNA_intronic
CAediting_577856	chr7_99438391_-	ncRNA_intronic
CAediting_577857	chr7_99459548_-	ncRNA_intronic
CAediting_577858	chr7_99459556_-	ncRNA_intronic
CAediting_577859	chr7_99459606_-	ncRNA_intronic
CAediting_577860	chr7_99459626_-	ncRNA_intronic
CAediting_577861	chr7_99461299_-	ncRNA_intronic
CAediting_577862	chr7_99461302_-	ncRNA_intronic
CAediting_577863	chr7_99461312_-	ncRNA_intronic
CAediting_577864	chr7_99461321_-	ncRNA_intronic
CAediting_577865	chr7_99461325_-	ncRNA_intronic
CAediting_577866	chr7_99461331_-	ncRNA_intronic
CAediting_577867	chr7_99461334_-	ncRNA_intronic
CAediting_577868	chr7_99461342_-	ncRNA_intronic
CAediting_577869	chr7_99461348_-	ncRNA_intronic
CAediting_577870	chr7_99461354_-	ncRNA_intronic
CAediting_577871	chr7_99461374_-	ncRNA_intronic
CAediting_577872	chr7_99461578_-	ncRNA_intronic
CAediting_577873	chr7_99461579_-	ncRNA_intronic
CAediting_577874	chr7_99461601_-	ncRNA_intronic
CAediting_577875	chr7_99461626_-	ncRNA_intronic
CAediting_577876	chr7_99461627_-	ncRNA_intronic
CAediting_577877	chr7_99461639_-	ncRNA_intronic
CAediting_577878	chr7_99461641_-	ncRNA_intronic
CAediting_577879	chr7_99461711_-	ncRNA_intronic
CAediting_577880	chr7_99461721_-	ncRNA_intronic
CAediting_577881	chr7_99461724_-	ncRNA_intronic
CAediting_577882	chr7_99461751_-	ncRNA_intronic
CAediting_577883	chr7_99461782_-	ncRNA_intronic
CAediting_577884	chr7_99461786_-	ncRNA_intronic
CAediting_577885	chr7_99461790_-	ncRNA_intronic
CAediting_577886	chr7_99461804_-	ncRNA_intronic
CAediting_577887	chr7_99461861_-	ncRNA_intronic
CAediting_577888	chr7_99461862_-	ncRNA_intronic
CAediting_577889	chr7_99461890_-	ncRNA_intronic
CAediting_577890	chr7_99461930_-	ncRNA_intronic
CAediting_577891	chr7_99461931_-	ncRNA_intronic
CAediting_577892	chr7_99462196_-	ncRNA_intronic
CAediting_577893	chr7_99462346_-	ncRNA_intronic
CAediting_577894	chr7_99462352_-	ncRNA_intronic
CAediting_577895	chr7_99462356_-	ncRNA_intronic
CAediting_577896	chr7_99462392_-	ncRNA_intronic
CAediting_577897	chr7_99462405_-	ncRNA_intronic
CAediting_577898	chr7_99462416_-	ncRNA_intronic
CAediting_577899	chr7_99462421_-	ncRNA_intronic
CAediting_577900	chr7_99462520_-	ncRNA_intronic
CAediting_577901	chr7_99462583_-	ncRNA_intronic
CAediting_577902	chr7_99462607_-	ncRNA_intronic
CAediting_577903	chr7_99462609_-	ncRNA_intronic
CAediting_577904	chr7_99462645_-	ncRNA_intronic
CAediting_577905	chr7_99462663_-	ncRNA_intronic
CAediting_577906	chr7_99462675_-	ncRNA_intronic
CAediting_577907	chr7_99462692_-	ncRNA_intronic
CAediting_577908	chr7_99462699_-	ncRNA_intronic
CAediting_577909	chr7_99462712_-	ncRNA_intronic
CAediting_577910	chr7_99462713_-	ncRNA_intronic
CAediting_577911	chr7_99462728_-	ncRNA_intronic
CAediting_577912	chr7_99462731_-	ncRNA_intronic
CAediting_577913	chr7_99462978_-	ncRNA_intronic
CAediting_577914	chr7_99463658_-	ncRNA_intronic
CAediting_577915	chr7_99463668_-	ncRNA_intronic
CAediting_577916	chr7_99463693_-	ncRNA_intronic
CAediting_577917	chr7_99463694_-	ncRNA_intronic
CAediting_577918	chr7_99463787_-	ncRNA_intronic
CAediting_577919	chr7_99463791_-	ncRNA_intronic
CAediting_577920	chr7_99464419_-	ncRNA_intronic
CAediting_577921	chr7_99464429_-	ncRNA_intronic
CAediting_577922	chr7_99464474_-	ncRNA_intronic
CAediting_577923	chr7_99464496_-	ncRNA_intronic
CAediting_577924	chr7_99464695_-	ncRNA_intronic
CAediting_577925	chr7_99464709_-	ncRNA_intronic
CAediting_577926	chr7_99464758_-	ncRNA_intronic
CAediting_577927	chr7_99464772_-	ncRNA_intronic
CAediting_577928	chr7_99464859_-	ncRNA_intronic
CAediting_577929	chr7_99464860_-	ncRNA_intronic
CAediting_577930	chr7_99464868_-	ncRNA_intronic
CAediting_577931	chr7_99464884_-	ncRNA_intronic
CAediting_577932	chr7_99464892_-	ncRNA_intronic
CAediting_577933	chr7_99464924_-	ncRNA_intronic
CAediting_577934	chr7_99464934_-	ncRNA_intronic
CAediting_577935	chr7_99464951_-	ncRNA_intronic
CAediting_577936	chr7_99465885_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_577814	chr7_99420839_-	SINE	Alu	AluSz
CAediting_577815	chr7_99420864_-	SINE	Alu	AluSz
CAediting_577816	chr7_99426391_-	Retroposon	SVA	SVA_D
CAediting_577817	chr7_99430988_-	SINE	Alu	AluSx1
CAediting_577818	chr7_99430989_-	SINE	Alu	AluSx1
CAediting_577819	chr7_99430992_-	SINE	Alu	AluSx1
CAediting_577820	chr7_99431053_-	SINE	Alu	AluSx1
CAediting_577821	chr7_99431188_-	SINE	Alu	AluSc
CAediting_577822	chr7_99431232_-	SINE	Alu	AluSc
CAediting_577823	chr7_99431240_-	SINE	Alu	AluSc
CAediting_577824	chr7_99431241_-	SINE	Alu	AluSc
CAediting_577825	chr7_99431258_-	SINE	Alu	AluSc
CAediting_577826	chr7_99431268_-	SINE	Alu	AluSc
CAediting_577827	chr7_99431401_-	SINE	Alu	AluSc
CAediting_577828	chr7_99431485_-	SINE	Alu	AluSz
CAediting_577829	chr7_99431491_-	SINE	Alu	AluSz
CAediting_577830	chr7_99431497_-	SINE	Alu	AluSz
CAediting_577831	chr7_99431498_-	SINE	Alu	AluSz
CAediting_577832	chr7_99431561_-	SINE	Alu	AluSz
CAediting_577833	chr7_99431570_-	SINE	Alu	AluSz
CAediting_577834	chr7_99431609_-	SINE	Alu	AluSz
CAediting_577835	chr7_99431619_-	SINE	Alu	AluSz
CAediting_577836	chr7_99431629_-	SINE	Alu	AluSz
CAediting_577837	chr7_99431641_-	SINE	Alu	AluSz
CAediting_577838	chr7_99431646_-	SINE	Alu	AluSz
CAediting_577839	chr7_99432937_-	SINE	Alu	AluJr
CAediting_577840	chr7_99432997_-	SINE	Alu	AluJr
CAediting_577841	chr7_99435517_-	SINE	Alu	AluSz
CAediting_577842	chr7_99436460_-	SINE	Alu	AluSx
CAediting_577843	chr7_99436466_-	SINE	Alu	AluSx
CAediting_577844	chr7_99436467_-	SINE	Alu	AluSx
CAediting_577845	chr7_99436471_-	SINE	Alu	AluSx
CAediting_577846	chr7_99437098_-	SINE	Alu	AluJr4
CAediting_577847	chr7_99437387_-	SINE	Alu	AluSc
CAediting_577848	chr7_99437416_-	SINE	Alu	AluSc
CAediting_577849	chr7_99437443_-	SINE	Alu	AluSc
CAediting_577850	chr7_99437453_-	SINE	Alu	AluSc
CAediting_577851	chr7_99437469_-	SINE	Alu	AluSc
CAediting_577852	chr7_99437472_-	SINE	Alu	AluSc
CAediting_577853	chr7_99437474_-	SINE	Alu	AluSc
CAediting_577854	chr7_99437476_-	SINE	Alu	AluSc
CAediting_577855	chr7_99438367_-	SINE	Alu	AluJr
CAediting_577856	chr7_99438391_-	SINE	Alu	AluJr
CAediting_577857	chr7_99459548_-	SINE	Alu	AluJo
CAediting_577858	chr7_99459556_-	SINE	Alu	AluJo
CAediting_577859	chr7_99459606_-	SINE	Alu	AluJo
CAediting_577860	chr7_99459626_-	SINE	Alu	AluJo
CAediting_577861	chr7_99461299_-	SINE	Alu	FAM
CAediting_577862	chr7_99461302_-	SINE	Alu	FAM
CAediting_577863	chr7_99461312_-	SINE	Alu	FAM
CAediting_577864	chr7_99461321_-	SINE	Alu	FAM
CAediting_577865	chr7_99461325_-	SINE	Alu	FAM
CAediting_577866	chr7_99461331_-	SINE	Alu	FAM
CAediting_577867	chr7_99461334_-	SINE	Alu	FAM
CAediting_577868	chr7_99461342_-	SINE	Alu	FAM
CAediting_577869	chr7_99461348_-	SINE	Alu	FAM
CAediting_577870	chr7_99461354_-	SINE	Alu	FAM
CAediting_577872	chr7_99461578_-	SINE	Alu	AluSz
CAediting_577873	chr7_99461579_-	SINE	Alu	AluSz
CAediting_577874	chr7_99461601_-	SINE	Alu	AluSz
CAediting_577875	chr7_99461626_-	SINE	Alu	AluSz
CAediting_577876	chr7_99461627_-	SINE	Alu	AluSz
CAediting_577877	chr7_99461639_-	SINE	Alu	AluSz
CAediting_577878	chr7_99461641_-	SINE	Alu	AluSz
CAediting_577879	chr7_99461711_-	SINE	Alu	AluSx
CAediting_577880	chr7_99461721_-	SINE	Alu	AluSx
CAediting_577881	chr7_99461724_-	SINE	Alu	AluSx
CAediting_577882	chr7_99461751_-	SINE	Alu	AluSx
CAediting_577883	chr7_99461782_-	SINE	Alu	AluSx
CAediting_577884	chr7_99461786_-	SINE	Alu	AluSx
CAediting_577885	chr7_99461790_-	SINE	Alu	AluSx
CAediting_577886	chr7_99461804_-	SINE	Alu	AluSx
CAediting_577887	chr7_99461861_-	SINE	Alu	AluSx
CAediting_577888	chr7_99461862_-	SINE	Alu	AluSx
CAediting_577889	chr7_99461890_-	SINE	Alu	AluSx
CAediting_577890	chr7_99461930_-	SINE	Alu	AluSx
CAediting_577891	chr7_99461931_-	SINE	Alu	AluSx
CAediting_577892	chr7_99462196_-	SINE	Alu	AluY
CAediting_577893	chr7_99462346_-	SINE	Alu	AluY
CAediting_577894	chr7_99462352_-	SINE	Alu	AluY
CAediting_577895	chr7_99462356_-	SINE	Alu	AluY
CAediting_577896	chr7_99462392_-	SINE	Alu	AluY
CAediting_577897	chr7_99462405_-	SINE	Alu	AluY
CAediting_577898	chr7_99462416_-	SINE	Alu	AluY
CAediting_577899	chr7_99462421_-	SINE	Alu	AluY
CAediting_577900	chr7_99462520_-	SINE	Alu	AluSg
CAediting_577901	chr7_99462583_-	SINE	Alu	AluSg
CAediting_577902	chr7_99462607_-	SINE	Alu	AluSg
CAediting_577903	chr7_99462609_-	SINE	Alu	AluSg
CAediting_577904	chr7_99462645_-	SINE	Alu	AluSg
CAediting_577905	chr7_99462663_-	SINE	Alu	AluSg
CAediting_577906	chr7_99462675_-	SINE	Alu	AluSg
CAediting_577907	chr7_99462692_-	SINE	Alu	AluSg
CAediting_577908	chr7_99462699_-	SINE	Alu	AluSg
CAediting_577909	chr7_99462712_-	SINE	Alu	AluSg
CAediting_577910	chr7_99462713_-	SINE	Alu	AluSg
CAediting_577911	chr7_99462728_-	SINE	Alu	AluSg
CAediting_577912	chr7_99462731_-	SINE	Alu	AluSg
CAediting_577913	chr7_99462978_-	SINE	MIR	MIRb
CAediting_577914	chr7_99463658_-	SINE	Alu	AluSq2
CAediting_577915	chr7_99463668_-	SINE	Alu	AluSq2
CAediting_577916	chr7_99463693_-	SINE	Alu	AluSq2
CAediting_577917	chr7_99463694_-	SINE	Alu	AluSq2
CAediting_577918	chr7_99463787_-	SINE	Alu	AluSq2
CAediting_577919	chr7_99463791_-	SINE	Alu	AluSq2
CAediting_577920	chr7_99464419_-	SINE	Alu	AluYf1
CAediting_577921	chr7_99464429_-	SINE	Alu	AluYf1
CAediting_577922	chr7_99464474_-	SINE	Alu	AluYf1
CAediting_577923	chr7_99464496_-	SINE	Alu	AluYf1
CAediting_577924	chr7_99464695_-	SINE	Alu	AluSz
CAediting_577925	chr7_99464709_-	SINE	Alu	AluSz
CAediting_577926	chr7_99464758_-	SINE	Alu	AluSz
CAediting_577927	chr7_99464772_-	SINE	Alu	AluSz
CAediting_577928	chr7_99464859_-	SINE	Alu	AluSz
CAediting_577929	chr7_99464860_-	SINE	Alu	AluSz
CAediting_577930	chr7_99464868_-	SINE	Alu	AluSz
CAediting_577931	chr7_99464884_-	SINE	Alu	AluSz
CAediting_577932	chr7_99464892_-	SINE	Alu	AluSz
CAediting_577933	chr7_99464924_-	SINE	Alu	AluSz
CAediting_577934	chr7_99464934_-	SINE	Alu	AluSz
CAediting_577935	chr7_99464951_-	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for PTCD1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000106246.16.PTCD1.

Correlation between RNA A-to-I editing and PSI for ENSG00000106246.16.PTCD1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PTCD1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for PTCD1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for PTCD1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000106246.16	ENST00000292478	hsa-miR-624-3p	99416742	99416748	7mer-m8	99416741	99416761	156	-14.86
CAediting_1054808	chr15_66496985_-	ENSG00000106246.16	ENST00000292478	hsa-miR-4512	99418501	99418507	7mer-m8	99418500	99418521	152	-19.56
CAediting_1160181	chr17_7017644_-	ENSG00000106246.16	ENST00000292478	hsa-miR-195-3p	99418164	99418171	8mer-1a	99418164	99418185	160	-18.22
CAediting_1368054	chr19_46709310_-	ENSG00000106246.16	ENST00000292478	hsa-miR-320e	99419735	99419741	7mer-m8	99419734	99419755	142	-21.81
CAediting_524911	chr7_5495852_-	ENSG00000106246.16	ENST00000292478	hsa-miR-589-3p	99419634	99419641	8mer-1a	99419634	99419657	149	-24.72
CAediting_524911	chr7_5495852_-	ENSG00000106246.16	ENST00000292478	hsa-miR-589-3p	99419924	99419930	7mer-m8	99419923	99419945	144	-19.43
CAediting_573001	chr7_92204086_-	ENSG00000106246.16	ENST00000292478	hsa-miR-1285-5p	99419366	99419372	7mer-m8	99419365	99419385	154	-18.49
CAediting_1524209	chrX_134546392_-	ENSG00000106246.16	ENST00000292478	hsa-miR-503-5p	99417764	99417770	7mer-m8	99417763	99417785	142	-16.69

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000106246.16	ENST00000292478	hsa-miR-1304-3p	99419367	99419374	8mer-1a	99419367	99419386	152	-24.24
CAediting_393	chr1_1167164_+	ENSG00000106246.16	ENST00000292478	hsa-miR-200b-3p	99417053	99417059	7mer-m8	99417052	99417073	144	-10.57
CAediting_1306324	chr19_13836464_-	ENSG00000106246.16	ENST00000292478	hsa-miR-27a-3p	99417939	99417945	7mer-m8	99417938	99417957	151	-15.86
CAediting_1368054	chr19_46709310_-	ENSG00000106246.16	ENST00000292478	hsa-miR-320e	99417584	99417590	7mer-m8	99417583	99417601	143	-13.25
CAediting_524911	chr7_5495852_-	ENSG00000106246.16	ENST00000292478	hsa-miR-589-3p	99419159	99419165	7mer-m8	99419158	99419181	147	-9.41
CAediting_1399425	chr20_1392958_-	ENSG00000106246.16	ENST00000292478	hsa-miR-6869-5p	99418092	99418098	7mer-m8	99418091	99418115	153	-23
CAediting_1399425	chr20_1392958_-	ENSG00000106246.16	ENST00000292478	hsa-miR-6869-5p	99416845	99416851	7mer-m8	99416844	99416864	146	-15.65

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PTCD1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000485746.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_577839	ENST00000485746.1	chr7_99432937_-	-254.80	-253.90	-254.80

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Relation with ADAR for PTCD1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for PTCD1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for PTCD1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_577862	chr7_99461302_-	0.0307162155686383	0.0159843	0.0185453

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RelatedDrugs for PTCD1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for PTCD1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene