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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: NIPSNAP3A (CAeditome ID:25934) |
Gene summary for NIPSNAP3A |
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Gene information | Gene symbol | NIPSNAP3A | Gene ID | 25934 |
Gene name | nipsnap homolog 3A | |
Synonyms | HSPC299|NIPSNAP4|TASSC | |
Cytomap | 9q31.1 | |
Type of gene | protein-coding | |
Description | protein NipSnap homolog 3Aprotein NipSnap homolog 4target for Salmonella secreted protein C | |
Modification date | 20210518 | |
UniProtAcc | Q9UFN0 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for NIPSNAP3A |
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CAediting_699786(104751070, +), CAediting_699787(104751110, +), CAediting_699788(104755020, +), CAediting_699789(104755025, +), CAediting_699790(104755075, +), CAediting_699791(104755078, +), CAediting_699792(104755079, +), CAediting_699793(104755084, +), CAediting_699794(104755130, +), CAediting_699795(104755153, +), CAediting_699796(104755798, +), CAediting_699797(104755857, +), CAediting_699798(104756884, +), CAediting_699799(104757057, +), CAediting_699800(104757823, +), CAediting_699801(104758799, +), CAediting_699802(104758808, +), CAediting_699803(104758849, +), CAediting_699804(104758850, +), CAediting_699805(104758902, +), CAediting_699806(104758945, +), |
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RNA editing positional annotations for NIPSNAP3A using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_699786 | chr9_104751070_+ | nonsynonymous SNV | ENST00000374767.4 | c.A175G | p.N59D | T | B | D |
CAediting_699787 | chr9_104751110_+ | nonsynonymous SNV | ENST00000374767.4 | c.A215G | p.Y72C | D | D | D |
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CAeditome ID | Position | Variant type |
CAediting_699786 | chr9_104751070_+ | exonic |
CAediting_699787 | chr9_104751110_+ | exonic |
CAediting_699788 | chr9_104755020_+ | ncRNA_intronic |
CAediting_699789 | chr9_104755025_+ | ncRNA_intronic |
CAediting_699790 | chr9_104755075_+ | ncRNA_intronic |
CAediting_699791 | chr9_104755078_+ | ncRNA_intronic |
CAediting_699792 | chr9_104755079_+ | ncRNA_intronic |
CAediting_699793 | chr9_104755084_+ | ncRNA_intronic |
CAediting_699794 | chr9_104755130_+ | ncRNA_intronic |
CAediting_699795 | chr9_104755153_+ | ncRNA_intronic |
CAediting_699796 | chr9_104755798_+ | ncRNA_intronic |
CAediting_699797 | chr9_104755857_+ | ncRNA_intronic |
CAediting_699798 | chr9_104756884_+ | ncRNA_intronic |
CAediting_699799 | chr9_104757057_+ | ncRNA_intronic |
CAediting_699800 | chr9_104757823_+ | ncRNA_intronic |
CAediting_699801 | chr9_104758799_+ | ncRNA_intronic |
CAediting_699802 | chr9_104758808_+ | ncRNA_intronic |
CAediting_699803 | chr9_104758849_+ | ncRNA_intronic |
CAediting_699804 | chr9_104758850_+ | ncRNA_intronic |
CAediting_699805 | chr9_104758902_+ | ncRNA_intronic |
CAediting_699806 | chr9_104758945_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_699788 | chr9_104755020_+ | SINE | Alu | AluSq2 |
CAediting_699789 | chr9_104755025_+ | SINE | Alu | AluSq2 |
CAediting_699790 | chr9_104755075_+ | SINE | Alu | AluSq2 |
CAediting_699791 | chr9_104755078_+ | SINE | Alu | AluSq2 |
CAediting_699792 | chr9_104755079_+ | SINE | Alu | AluSq2 |
CAediting_699793 | chr9_104755084_+ | SINE | Alu | AluSq2 |
CAediting_699794 | chr9_104755130_+ | SINE | Alu | AluSq2 |
CAediting_699795 | chr9_104755153_+ | SINE | Alu | AluSq2 |
CAediting_699796 | chr9_104755798_+ | SINE | Alu | AluJr4 |
CAediting_699797 | chr9_104755857_+ | SINE | Alu | AluJr4 |
CAediting_699798 | chr9_104756884_+ | SINE | Alu | AluSx |
CAediting_699799 | chr9_104757057_+ | SINE | Alu | AluSx |
CAediting_699800 | chr9_104757823_+ | SINE | Alu | AluJr |
CAediting_699801 | chr9_104758799_+ | SINE | Alu | AluSq2 |
CAediting_699802 | chr9_104758808_+ | SINE | Alu | AluSq2 |
CAediting_699803 | chr9_104758849_+ | SINE | Alu | AluSq2 |
CAediting_699804 | chr9_104758850_+ | SINE | Alu | AluSq2 |
CAediting_699805 | chr9_104758902_+ | SINE | Alu | AluSq2 |
CAediting_699806 | chr9_104758945_+ | SINE | Alu | AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for NIPSNAP3A |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NIPSNAP3A |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for NIPSNAP3A |
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The effects of the RNA editing to the miRNA binding sites for NIPSNAP3A |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for NIPSNAP3A |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for NIPSNAP3A |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for NIPSNAP3A |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for NIPSNAP3A |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for NIPSNAP3A |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NIPSNAP3A |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |