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Editing gene: RNF19A (CAeditome ID:25897)

Gene summary for RNF19A

Gene summary

Gene information	Gene symbol	RNF19A
	Gene ID	25897
	Gene name	ring finger protein 19A, RBR E3 ubiquitin protein ligase
	Synonyms	RNF19
	Cytomap	8q22.2
	Type of gene	protein-coding
	Description	E3 ubiquitin-protein ligase RNF19Adouble ring-finger proteinprotein p38 interacting with transcription factor Sp1ring finger protein 19A, E3 ubiquitin protein ligasering-IBR-ring domain containing protein Dorfin
	Modification date	20210529
	UniProtAcc	Q9NV58
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for RNF19A

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000034677.10

RNA A-to-I editing events in Cancer.

CAediting_653494(100266520, -), CAediting_653495(100267607, -), CAediting_653496(100267614, -), CAediting_653497(100267773, -), CAediting_653498(100267866, -), CAediting_653499(100274671, -), CAediting_653500(100276655, -), CAediting_653501(100276669, -), CAediting_653502(100276670, -), CAediting_653503(100276675, -), CAediting_653504(100276676, -), CAediting_653505(100276699, -), CAediting_653506(100276718, -), CAediting_653507(100276720, -), CAediting_653508(100277450, -), CAediting_653509(100279735, -), CAediting_653510(100290211, -), CAediting_653511(100290266, -), CAediting_653512(100290366, -), CAediting_653513(100296157, -), CAediting_653514(100296181, -), CAediting_653515(100296201, -), CAediting_653516(100296213, -), CAediting_653517(100296220, -), CAediting_653518(100296230, -), CAediting_653519(100296233, -), CAediting_653520(100296243, -), CAediting_653521(100296253, -), CAediting_653522(100296265, -), CAediting_653523(100296269, -), CAediting_653524(100296283, -), CAediting_653525(100296287, -), CAediting_653526(100296308, -), CAediting_653527(100296323, -), CAediting_653528(100296351, -), CAediting_653529(100296369, -), CAediting_653530(100296372, -), CAediting_653531(100299047, -), CAediting_653532(100299076, -), CAediting_653533(100299077, -), CAediting_653534(100299078, -), CAediting_653535(100299086, -), CAediting_653536(100299094, -), CAediting_653537(100299098, -), CAediting_653538(100299101, -), CAediting_653539(100300132, -), CAediting_653540(100300138, -), CAediting_653541(100300144, -), CAediting_653542(100300145, -), CAediting_653543(100300157, -), CAediting_653544(100300159, -), CAediting_653545(100300165, -), CAediting_653546(100300170, -), CAediting_653547(100300171, -), CAediting_653548(100300177, -), CAediting_653549(100300391, -), CAediting_653550(100300433, -), CAediting_653551(100300487, -), CAediting_653552(100300531, -), CAediting_653553(100300537, -), CAediting_653554(100300601, -), CAediting_653555(100300617, -), CAediting_653556(100300619, -), CAediting_653557(100300647, -), CAediting_653558(100303649, -), CAediting_653559(100303654, -), CAediting_653560(100303667, -), CAediting_653561(100303679, -), CAediting_653562(100303680, -), CAediting_653563(100303681, -), CAediting_653564(100303689, -), CAediting_653565(100303702, -), CAediting_653566(100303706, -), CAediting_653567(100303707, -), CAediting_653568(100303720, -), CAediting_653569(100303726, -), CAediting_653570(100303732, -), CAediting_653571(100303758, -), CAediting_653572(100303810, -), CAediting_653573(100303814, -), CAediting_653574(100303816, -), CAediting_653575(100303826, -), CAediting_653576(100303837, -), CAediting_653577(100303844, -), CAediting_653578(100303850, -), CAediting_653579(100303853, -), CAediting_653580(100303854, -), CAediting_653581(100303855, -), CAediting_653582(100303880, -), CAediting_653583(100303895, -), CAediting_653584(100303899, -), CAediting_653585(100303911, -), CAediting_653586(100303915, -), CAediting_653587(100303923, -), CAediting_653588(100303931, -), CAediting_653589(100303933, -), CAediting_653590(100303991, -), CAediting_653591(100304004, -), CAediting_653592(100304022, -), CAediting_653593(100304029, -), CAediting_653594(100304035, -), CAediting_653595(100304048, -), CAediting_653596(100304062, -), CAediting_653597(100304065, -), CAediting_653598(100304068, -), CAediting_653599(100304072, -), CAediting_653600(100304078, -), CAediting_653601(100304089, -), CAediting_653602(100304095, -), CAediting_653603(100304101, -), CAediting_653604(100304113, -), CAediting_653605(100304180, -), CAediting_653606(100304186, -), CAediting_653607(100304194, -), CAediting_653608(100304199, -), CAediting_653609(100304202, -), CAediting_653610(100304203, -), CAediting_653611(100304204, -), CAediting_653612(100304212, -), CAediting_653613(100304226, -), CAediting_653614(100304229, -), CAediting_653615(100304234, -), CAediting_653616(100304235, -), CAediting_653617(100304243, -), CAediting_653618(100304247, -), CAediting_653619(100304253, -), CAediting_653620(100305057, -), CAediting_653621(100305068, -), CAediting_653622(100305080, -), CAediting_653623(100305084, -), CAediting_653624(100305175, -), CAediting_653625(100305179, -), CAediting_653626(100305194, -), CAediting_653627(100305200, -), CAediting_653628(100377266, -), CAediting_653629(100377293, -),

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RNA editing positional annotations for RNF19A using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_653494	chr8_100266520_-	ncRNA_intronic
CAediting_653495	chr8_100267607_-	ncRNA_intronic
CAediting_653496	chr8_100267614_-	ncRNA_intronic
CAediting_653497	chr8_100267773_-	ncRNA_intronic
CAediting_653498	chr8_100267866_-	ncRNA_intronic
CAediting_653499	chr8_100274671_-	ncRNA_intronic
CAediting_653500	chr8_100276655_-	intronic
CAediting_653501	chr8_100276669_-	intronic
CAediting_653502	chr8_100276670_-	intronic
CAediting_653503	chr8_100276675_-	intronic
CAediting_653504	chr8_100276676_-	intronic
CAediting_653505	chr8_100276699_-	intronic
CAediting_653506	chr8_100276718_-	intronic
CAediting_653507	chr8_100276720_-	intronic
CAediting_653508	chr8_100277450_-	intronic
CAediting_653509	chr8_100279735_-	intronic
CAediting_653510	chr8_100290211_-	intronic
CAediting_653511	chr8_100290266_-	intronic
CAediting_653512	chr8_100290366_-	intronic
CAediting_653513	chr8_100296157_-	intronic
CAediting_653514	chr8_100296181_-	intronic
CAediting_653515	chr8_100296201_-	intronic
CAediting_653516	chr8_100296213_-	intronic
CAediting_653517	chr8_100296220_-	intronic
CAediting_653518	chr8_100296230_-	intronic
CAediting_653519	chr8_100296233_-	intronic
CAediting_653520	chr8_100296243_-	intronic
CAediting_653521	chr8_100296253_-	intronic
CAediting_653522	chr8_100296265_-	intronic
CAediting_653523	chr8_100296269_-	intronic
CAediting_653524	chr8_100296283_-	intronic
CAediting_653525	chr8_100296287_-	intronic
CAediting_653526	chr8_100296308_-	intronic
CAediting_653527	chr8_100296323_-	intronic
CAediting_653528	chr8_100296351_-	intronic
CAediting_653529	chr8_100296369_-	intronic
CAediting_653530	chr8_100296372_-	intronic
CAediting_653531	chr8_100299047_-	intronic
CAediting_653532	chr8_100299076_-	intronic
CAediting_653533	chr8_100299077_-	intronic
CAediting_653534	chr8_100299078_-	intronic
CAediting_653535	chr8_100299086_-	intronic
CAediting_653536	chr8_100299094_-	intronic
CAediting_653537	chr8_100299098_-	intronic
CAediting_653538	chr8_100299101_-	intronic
CAediting_653539	chr8_100300132_-	intronic
CAediting_653540	chr8_100300138_-	intronic
CAediting_653541	chr8_100300144_-	intronic
CAediting_653542	chr8_100300145_-	intronic
CAediting_653543	chr8_100300157_-	intronic
CAediting_653544	chr8_100300159_-	intronic
CAediting_653545	chr8_100300165_-	intronic
CAediting_653546	chr8_100300170_-	intronic
CAediting_653547	chr8_100300171_-	intronic
CAediting_653548	chr8_100300177_-	intronic
CAediting_653549	chr8_100300391_-	intronic
CAediting_653550	chr8_100300433_-	intronic
CAediting_653551	chr8_100300487_-	intronic
CAediting_653552	chr8_100300531_-	UTR5
CAediting_653553	chr8_100300537_-	UTR5
CAediting_653554	chr8_100300601_-	ncRNA_exonic
CAediting_653555	chr8_100300617_-	ncRNA_exonic
CAediting_653556	chr8_100300619_-	ncRNA_exonic
CAediting_653557	chr8_100300647_-	ncRNA_exonic
CAediting_653558	chr8_100303649_-	ncRNA_intronic
CAediting_653559	chr8_100303654_-	ncRNA_intronic
CAediting_653560	chr8_100303667_-	ncRNA_intronic
CAediting_653561	chr8_100303679_-	ncRNA_intronic
CAediting_653562	chr8_100303680_-	ncRNA_intronic
CAediting_653563	chr8_100303681_-	ncRNA_intronic
CAediting_653564	chr8_100303689_-	ncRNA_intronic
CAediting_653565	chr8_100303702_-	ncRNA_intronic
CAediting_653566	chr8_100303706_-	ncRNA_intronic
CAediting_653567	chr8_100303707_-	ncRNA_intronic
CAediting_653568	chr8_100303720_-	ncRNA_intronic
CAediting_653569	chr8_100303726_-	ncRNA_intronic
CAediting_653570	chr8_100303732_-	ncRNA_intronic
CAediting_653571	chr8_100303758_-	ncRNA_intronic
CAediting_653572	chr8_100303810_-	ncRNA_intronic
CAediting_653573	chr8_100303814_-	ncRNA_intronic
CAediting_653574	chr8_100303816_-	ncRNA_intronic
CAediting_653575	chr8_100303826_-	ncRNA_intronic
CAediting_653576	chr8_100303837_-	ncRNA_intronic
CAediting_653577	chr8_100303844_-	ncRNA_intronic
CAediting_653578	chr8_100303850_-	ncRNA_intronic
CAediting_653579	chr8_100303853_-	ncRNA_intronic
CAediting_653580	chr8_100303854_-	ncRNA_intronic
CAediting_653581	chr8_100303855_-	ncRNA_intronic
CAediting_653582	chr8_100303880_-	ncRNA_intronic
CAediting_653583	chr8_100303895_-	ncRNA_intronic
CAediting_653584	chr8_100303899_-	ncRNA_intronic
CAediting_653585	chr8_100303911_-	ncRNA_intronic
CAediting_653586	chr8_100303915_-	ncRNA_intronic
CAediting_653587	chr8_100303923_-	ncRNA_intronic
CAediting_653588	chr8_100303931_-	ncRNA_intronic
CAediting_653589	chr8_100303933_-	ncRNA_intronic
CAediting_653590	chr8_100303991_-	ncRNA_intronic
CAediting_653591	chr8_100304004_-	ncRNA_intronic
CAediting_653592	chr8_100304022_-	ncRNA_intronic
CAediting_653593	chr8_100304029_-	ncRNA_intronic
CAediting_653594	chr8_100304035_-	ncRNA_intronic
CAediting_653595	chr8_100304048_-	ncRNA_intronic
CAediting_653596	chr8_100304062_-	ncRNA_intronic
CAediting_653597	chr8_100304065_-	ncRNA_intronic
CAediting_653598	chr8_100304068_-	ncRNA_intronic
CAediting_653599	chr8_100304072_-	ncRNA_intronic
CAediting_653600	chr8_100304078_-	ncRNA_intronic
CAediting_653601	chr8_100304089_-	ncRNA_intronic
CAediting_653602	chr8_100304095_-	ncRNA_intronic
CAediting_653603	chr8_100304101_-	ncRNA_intronic
CAediting_653604	chr8_100304113_-	ncRNA_intronic
CAediting_653605	chr8_100304180_-	ncRNA_intronic
CAediting_653606	chr8_100304186_-	ncRNA_intronic
CAediting_653607	chr8_100304194_-	ncRNA_intronic
CAediting_653608	chr8_100304199_-	ncRNA_intronic
CAediting_653609	chr8_100304202_-	ncRNA_intronic
CAediting_653610	chr8_100304203_-	ncRNA_intronic
CAediting_653611	chr8_100304204_-	ncRNA_intronic
CAediting_653612	chr8_100304212_-	ncRNA_intronic
CAediting_653613	chr8_100304226_-	ncRNA_intronic
CAediting_653614	chr8_100304229_-	ncRNA_intronic
CAediting_653615	chr8_100304234_-	ncRNA_intronic
CAediting_653616	chr8_100304235_-	ncRNA_intronic
CAediting_653617	chr8_100304243_-	ncRNA_intronic
CAediting_653618	chr8_100304247_-	ncRNA_intronic
CAediting_653619	chr8_100304253_-	ncRNA_intronic
CAediting_653620	chr8_100305057_-	ncRNA_intronic
CAediting_653621	chr8_100305068_-	ncRNA_intronic
CAediting_653622	chr8_100305080_-	ncRNA_intronic
CAediting_653623	chr8_100305084_-	ncRNA_intronic
CAediting_653624	chr8_100305175_-	ncRNA_intronic
CAediting_653625	chr8_100305179_-	ncRNA_intronic
CAediting_653626	chr8_100305194_-	ncRNA_intronic
CAediting_653627	chr8_100305200_-	ncRNA_intronic
CAediting_653628	chr8_100377266_-	intronic
CAediting_653629	chr8_100377293_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_653494	chr8_100266520_-	SINE	Alu	AluJb
CAediting_653495	chr8_100267607_-	SINE	Alu	AluJr
CAediting_653496	chr8_100267614_-	SINE	Alu	AluJr
CAediting_653497	chr8_100267773_-	SINE	Alu	AluSq2
CAediting_653498	chr8_100267866_-	SINE	Alu	AluSq2
CAediting_653499	chr8_100274671_-	SINE	Alu	AluSz
CAediting_653500	chr8_100276655_-	SINE	Alu	AluSz6
CAediting_653501	chr8_100276669_-	SINE	Alu	AluSz6
CAediting_653502	chr8_100276670_-	SINE	Alu	AluSz6
CAediting_653503	chr8_100276675_-	SINE	Alu	AluSz6
CAediting_653504	chr8_100276676_-	SINE	Alu	AluSz6
CAediting_653505	chr8_100276699_-	SINE	Alu	AluSz6
CAediting_653506	chr8_100276718_-	SINE	Alu	AluSz6
CAediting_653507	chr8_100276720_-	SINE	Alu	AluSz6
CAediting_653508	chr8_100277450_-	SINE	Alu	AluY
CAediting_653509	chr8_100279735_-	SINE	Alu	AluSz
CAediting_653510	chr8_100290211_-	SINE	Alu	AluSz
CAediting_653511	chr8_100290266_-	SINE	Alu	AluSz
CAediting_653512	chr8_100290366_-	SINE	Alu	AluSz
CAediting_653513	chr8_100296157_-	SINE	Alu	AluSz
CAediting_653514	chr8_100296181_-	SINE	Alu	AluSz
CAediting_653515	chr8_100296201_-	SINE	Alu	AluSz
CAediting_653516	chr8_100296213_-	SINE	Alu	AluSz
CAediting_653517	chr8_100296220_-	SINE	Alu	AluSz
CAediting_653518	chr8_100296230_-	SINE	Alu	AluSz
CAediting_653519	chr8_100296233_-	SINE	Alu	AluSz
CAediting_653520	chr8_100296243_-	SINE	Alu	AluSz
CAediting_653521	chr8_100296253_-	SINE	Alu	AluSz
CAediting_653522	chr8_100296265_-	SINE	Alu	AluSz
CAediting_653523	chr8_100296269_-	SINE	Alu	AluSz
CAediting_653524	chr8_100296283_-	SINE	Alu	AluSz
CAediting_653525	chr8_100296287_-	SINE	Alu	AluSz
CAediting_653526	chr8_100296308_-	SINE	Alu	AluSz
CAediting_653527	chr8_100296323_-	SINE	Alu	AluSz
CAediting_653528	chr8_100296351_-	SINE	Alu	AluSz
CAediting_653529	chr8_100296369_-	SINE	Alu	AluSz
CAediting_653530	chr8_100296372_-	SINE	Alu	AluSz
CAediting_653549	chr8_100300391_-	SINE	Alu	AluJr
CAediting_653550	chr8_100300433_-	SINE	Alu	AluJr
CAediting_653551	chr8_100300487_-	SINE	Alu	AluJr
CAediting_653552	chr8_100300531_-	SINE	Alu	AluJr
CAediting_653553	chr8_100300537_-	SINE	Alu	AluJr
CAediting_653554	chr8_100300601_-	SINE	Alu	AluJr
CAediting_653555	chr8_100300617_-	SINE	Alu	AluJr
CAediting_653556	chr8_100300619_-	SINE	Alu	AluJr
CAediting_653557	chr8_100300647_-	SINE	Alu	AluJr
CAediting_653558	chr8_100303649_-	SINE	Alu	AluSz6
CAediting_653559	chr8_100303654_-	SINE	Alu	AluSz6
CAediting_653560	chr8_100303667_-	SINE	Alu	AluSz6
CAediting_653561	chr8_100303679_-	SINE	Alu	AluSz6
CAediting_653562	chr8_100303680_-	SINE	Alu	AluSz6
CAediting_653563	chr8_100303681_-	SINE	Alu	AluSz6
CAediting_653564	chr8_100303689_-	SINE	Alu	AluSz6
CAediting_653565	chr8_100303702_-	SINE	Alu	AluSz6
CAediting_653566	chr8_100303706_-	SINE	Alu	AluSz6
CAediting_653567	chr8_100303707_-	SINE	Alu	AluSz6
CAediting_653568	chr8_100303720_-	SINE	Alu	AluSz6
CAediting_653569	chr8_100303726_-	SINE	Alu	AluSz6
CAediting_653570	chr8_100303732_-	SINE	Alu	AluSz6
CAediting_653571	chr8_100303758_-	SINE	Alu	AluSz6
CAediting_653572	chr8_100303810_-	SINE	Alu	AluSz6
CAediting_653573	chr8_100303814_-	SINE	Alu	AluSz6
CAediting_653574	chr8_100303816_-	SINE	Alu	AluSz6
CAediting_653575	chr8_100303826_-	SINE	Alu	AluSz6
CAediting_653576	chr8_100303837_-	SINE	Alu	AluSz6
CAediting_653577	chr8_100303844_-	SINE	Alu	AluSz6
CAediting_653578	chr8_100303850_-	SINE	Alu	AluSz6
CAediting_653579	chr8_100303853_-	SINE	Alu	AluSz6
CAediting_653580	chr8_100303854_-	SINE	Alu	AluSz6
CAediting_653581	chr8_100303855_-	SINE	Alu	AluSz6
CAediting_653582	chr8_100303880_-	SINE	Alu	AluSz6
CAediting_653583	chr8_100303895_-	SINE	Alu	AluSz6
CAediting_653584	chr8_100303899_-	SINE	Alu	AluSz6
CAediting_653585	chr8_100303911_-	SINE	Alu	AluSz6
CAediting_653586	chr8_100303915_-	SINE	Alu	AluSz6
CAediting_653587	chr8_100303923_-	SINE	Alu	AluSz6
CAediting_653588	chr8_100303931_-	SINE	Alu	AluSz6
CAediting_653589	chr8_100303933_-	SINE	Alu	AluSz6
CAediting_653590	chr8_100303991_-	SINE	Alu	AluSq2
CAediting_653591	chr8_100304004_-	SINE	Alu	AluSq2
CAediting_653592	chr8_100304022_-	SINE	Alu	AluSq2
CAediting_653593	chr8_100304029_-	SINE	Alu	AluSq2
CAediting_653594	chr8_100304035_-	SINE	Alu	AluSq2
CAediting_653595	chr8_100304048_-	SINE	Alu	AluSq2
CAediting_653596	chr8_100304062_-	SINE	Alu	AluSq2
CAediting_653597	chr8_100304065_-	SINE	Alu	AluSq2
CAediting_653598	chr8_100304068_-	SINE	Alu	AluSq2
CAediting_653599	chr8_100304072_-	SINE	Alu	AluSq2
CAediting_653600	chr8_100304078_-	SINE	Alu	AluSq2
CAediting_653601	chr8_100304089_-	SINE	Alu	AluSq2
CAediting_653602	chr8_100304095_-	SINE	Alu	AluSq2
CAediting_653603	chr8_100304101_-	SINE	Alu	AluSq2
CAediting_653604	chr8_100304113_-	SINE	Alu	AluSq2
CAediting_653605	chr8_100304180_-	SINE	Alu	AluSq2
CAediting_653606	chr8_100304186_-	SINE	Alu	AluSq2
CAediting_653607	chr8_100304194_-	SINE	Alu	AluSq2
CAediting_653608	chr8_100304199_-	SINE	Alu	AluSq2
CAediting_653609	chr8_100304202_-	SINE	Alu	AluSq2
CAediting_653610	chr8_100304203_-	SINE	Alu	AluSq2
CAediting_653611	chr8_100304204_-	SINE	Alu	AluSq2
CAediting_653612	chr8_100304212_-	SINE	Alu	AluSq2
CAediting_653613	chr8_100304226_-	SINE	Alu	AluSq2
CAediting_653614	chr8_100304229_-	SINE	Alu	AluSq2
CAediting_653615	chr8_100304234_-	SINE	Alu	AluSq2
CAediting_653616	chr8_100304235_-	SINE	Alu	AluSq2
CAediting_653617	chr8_100304243_-	SINE	Alu	AluSq2
CAediting_653618	chr8_100304247_-	SINE	Alu	AluSq2
CAediting_653619	chr8_100304253_-	SINE	Alu	AluSq2
CAediting_653620	chr8_100305057_-	SINE	Alu	AluSx1
CAediting_653621	chr8_100305068_-	SINE	Alu	AluSx1
CAediting_653622	chr8_100305080_-	SINE	Alu	AluSx1
CAediting_653623	chr8_100305084_-	SINE	Alu	AluSx1
CAediting_653624	chr8_100305175_-	SINE	Alu	AluSx1
CAediting_653625	chr8_100305179_-	SINE	Alu	AluSx1
CAediting_653626	chr8_100305194_-	SINE	Alu	AluSx1
CAediting_653627	chr8_100305200_-	SINE	Alu	AluSx1
CAediting_653628	chr8_100377266_-	SINE	Alu	AluJb
CAediting_653629	chr8_100377293_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for RNF19A

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_653571	chr8_100303758_-	100303754:100303776	3SS	0+2i	TTTTTTTTTTTTTTTACAAGCGG	6.37	TTTTTTTTTTTTTTTACAGGCGG	-1.58
MEX_1	CAediting_653571	chr8_100303758_-	100303754:100303776	3SS	0+2i	TTTTTTTTTTTTTTTACAAGCGG	6.37	TTTTTTTTTTTTTTTACAGGCGG	-1.58

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000034677.10.RNF19A.

Correlation between RNA A-to-I editing and PSI for ENSG00000034677.10.RNF19A.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RNF19A

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for RNF19A

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for RNF19A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000034677.10	ENST00000519449	hsa-miR-200b-3p	100258212	100258218	7mer-m8	100258211	100258231	148	-9.43
CAediting_1229414	chr17_67471546_+	ENSG00000034677.10	ENST00000519449	hsa-miR-548aa	100258256	100258263	8mer-1a	100258256	100258278	152	-9.83
CAediting_1160181	chr17_7017644_-	ENSG00000034677.10	ENST00000519449	hsa-miR-195-3p	100258290	100258296	7mer-m8	100258289	100258308	144	-10.85
CAediting_442554	chr5_154685830_+	ENSG00000034677.10	ENST00000519449	hsa-miR-1303	100257528	100257534	7mer-m8	100257527	100257549	149	-13.29

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000034677.10	ENST00000519449	hsa-miR-1303	100257786	100257792	7mer-m8	100257785	100257806	148	-14.48

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RNF19A

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000519449.4	protein_coding
ENST00000523481.4	protein_coding
ENST00000519342.1	processed_transcript
ENST00000522182.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_653552	ENST00000519449.4	chr8_100300531_-	-1163.20	-1161.00	-1173.70
CAediting_653553	ENST00000519449.4	chr8_100300537_-	-1165.20	-1161.00	-1173.70
CAediting_653554	ENST00000519449.4	chr8_100300601_-	-1165.00	-1161.00	-1173.70
CAediting_653555	ENST00000519449.4	chr8_100300617_-	-1162.30	-1161.00	-1173.70
CAediting_653556	ENST00000519449.4	chr8_100300619_-	-1160.60	-1161.00	-1173.70
CAediting_653557	ENST00000519449.4	chr8_100300647_-	-1161.40	-1161.00	-1173.70
CAediting_653552	ENST00000523481.4	chr8_100300531_-	-157.20	-154.40	-167.80
CAediting_653553	ENST00000523481.4	chr8_100300537_-	-158.10	-154.40	-167.80
CAediting_653554	ENST00000523481.4	chr8_100300601_-	-158.40	-154.40	-167.80
CAediting_653555	ENST00000523481.4	chr8_100300617_-	-156.20	-154.40	-167.80
CAediting_653556	ENST00000523481.4	chr8_100300619_-	-155.30	-154.40	-167.80
CAediting_653557	ENST00000523481.4	chr8_100300647_-	-154.80	-154.40	-167.80
CAediting_653554	ENST00000519342.1	chr8_100300601_-	-241.90	-240.60	-247.90
CAediting_653555	ENST00000519342.1	chr8_100300617_-	-239.70	-240.60	-247.90
CAediting_653556	ENST00000519342.1	chr8_100300619_-	-240.50	-240.60	-247.90
CAediting_653557	ENST00000519342.1	chr8_100300647_-	-241.00	-240.60	-247.90
CAediting_653554	ENST00000522182.1	chr8_100300601_-	-185.30	-183.30	-187.70
CAediting_653555	ENST00000522182.1	chr8_100300617_-	-182.30	-183.30	-187.70
CAediting_653556	ENST00000522182.1	chr8_100300619_-	-182.90	-183.30	-187.70
CAediting_653557	ENST00000522182.1	chr8_100300647_-	-183.70	-183.30	-187.70

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Relation with ADAR for RNF19A

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_653569	chr8_100303726_-	0.00929002804327175	0.272781994474824	.	.	.	.

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Relation with cancer stages for RNF19A

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_653604	chr8_100304113_-	0.000254764090845858	0.462746181016447
KIRC	pathologic_stage	CAediting_653618	chr8_100304247_-	0.000485069307429117	0.293107873029764

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Relation with survival for RNF19A

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LUAD	CAediting_653618	chr8_100304247_-	0.000807252503313927	0.00972219	0.00546379

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RelatedDrugs for RNF19A

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for RNF19A

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene