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Editing gene: NBPF14 (CAeditome ID:25832)

Gene summary for NBPF14

Gene summary

Gene information	Gene symbol	NBPF14
	Gene ID	25832
	Gene name	NBPF member 14
	Synonyms	DJ328E19.C1.1\|NBPF
	Cytomap	1q21.2
	Type of gene	protein-coding
	Description	neuroblastoma breakpoint family member 14AE5
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for NBPF14

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000270629.4

RNA A-to-I editing events in Cancer.

CAediting_93289(148532062, -), CAediting_93290(148532063, -), CAediting_93291(148532070, -), CAediting_93292(148532080, -), CAediting_93293(148532104, -), CAediting_93294(148532115, -), CAediting_93295(148532127, -), CAediting_93296(148532131, -), CAediting_93297(148532134, -), CAediting_93298(148532136, -), CAediting_93299(148532139, -), CAediting_93300(148532140, -), CAediting_93301(148532141, -), CAediting_93302(148532143, -), CAediting_93303(148532145, -), CAediting_93304(148532146, -), CAediting_93305(148532148, -), CAediting_93306(148532154, -), CAediting_93307(148532160, -), CAediting_93308(148532197, -), CAediting_93309(148532200, -), CAediting_93310(148532204, -),

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RNA editing positional annotations for NBPF14 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_93289	chr1_148532062_-	UTR3
CAediting_93290	chr1_148532063_-	UTR3
CAediting_93291	chr1_148532070_-	UTR3
CAediting_93292	chr1_148532080_-	UTR3
CAediting_93293	chr1_148532104_-	UTR3
CAediting_93294	chr1_148532115_-	UTR3
CAediting_93295	chr1_148532127_-	UTR3
CAediting_93296	chr1_148532131_-	UTR3
CAediting_93297	chr1_148532134_-	UTR3
CAediting_93298	chr1_148532136_-	UTR3
CAediting_93299	chr1_148532139_-	UTR3
CAediting_93300	chr1_148532140_-	UTR3
CAediting_93301	chr1_148532141_-	UTR3
CAediting_93302	chr1_148532143_-	UTR3
CAediting_93303	chr1_148532145_-	UTR3
CAediting_93304	chr1_148532146_-	UTR3
CAediting_93305	chr1_148532148_-	UTR3
CAediting_93306	chr1_148532154_-	UTR3
CAediting_93307	chr1_148532160_-	UTR3
CAediting_93308	chr1_148532197_-	UTR3
CAediting_93309	chr1_148532200_-	UTR3
CAediting_93310	chr1_148532204_-	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_93289	chr1_148532062_-	LINE	L1	L1MC4
CAediting_93290	chr1_148532063_-	LINE	L1	L1MC4
CAediting_93291	chr1_148532070_-	LINE	L1	L1MC4
CAediting_93292	chr1_148532080_-	LINE	L1	L1MC4
CAediting_93293	chr1_148532104_-	LINE	L1	L1MC4
CAediting_93294	chr1_148532115_-	LINE	L1	L1MC4
CAediting_93295	chr1_148532127_-	LINE	L1	L1MC4
CAediting_93296	chr1_148532131_-	LINE	L1	L1MC4
CAediting_93297	chr1_148532134_-	LINE	L1	L1MC4
CAediting_93298	chr1_148532136_-	LINE	L1	L1MC4
CAediting_93299	chr1_148532139_-	LINE	L1	L1MC4
CAediting_93300	chr1_148532140_-	LINE	L1	L1MC4
CAediting_93301	chr1_148532141_-	LINE	L1	L1MC4
CAediting_93302	chr1_148532143_-	LINE	L1	L1MC4
CAediting_93303	chr1_148532145_-	LINE	L1	L1MC4
CAediting_93304	chr1_148532146_-	LINE	L1	L1MC4
CAediting_93305	chr1_148532148_-	LINE	L1	L1MC4
CAediting_93306	chr1_148532154_-	LINE	L1	L1MC4
CAediting_93307	chr1_148532160_-	LINE	L1	L1MC4
CAediting_93308	chr1_148532197_-	LINE	L1	L1MC4
CAediting_93309	chr1_148532200_-	LINE	L1	L1MC4
CAediting_93310	chr1_148532204_-	LINE	L1	L1MC4

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RNA A-to-I editing events in the alternative splicing sites for NBPF14

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000270629.4.NBPF14.

Correlation between RNA A-to-I editing and PSI for ENSG00000270629.4.NBPF14.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NBPF14

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for NBPF14

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for NBPF14

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6845-3p	148532129	148532136	8mer-1a	148532129	148532149	154.00	-19.14
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6873-3p	148532129	148532134	6mer	148532128	148532150	146.00	-14.24
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6845-3p	148532129	148532136	8mer-1a	148532129	148532149	154.00	-19.14
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6873-3p	148532129	148532134	6mer	148532128	148532150	146.00	-14.24
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6845-3p	148532129	148532136	8mer-1a	148532129	148532149	154.00	-19.14
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6873-3p	148532129	148532134	6mer	148532128	148532150	146.00	-14.24
CAediting_93298	chr1_148532136_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6832-3p	148532136	148532142	7mer-m8	148532135	148532154	147.00	-9.85
CAediting_93298	chr1_148532136_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6832-3p	148532136	148532142	7mer-m8	148532135	148532154	147.00	-9.85
CAediting_93298	chr1_148532136_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6832-3p	148532136	148532142	7mer-m8	148532135	148532154	147.00	-9.85
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000614999	hsa-miR-204-5p	148532136	148532142	7mer-m8	148532135	148532157	141.00	-11.65
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000614999	hsa-miR-211-5p	148532136	148532142	7mer-m8	148532135	148532157	141.00	-11.65
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000614999	hsa-miR-4287	148532134	148532141	8mer-1a	148532134	148532152	140.00	-14.47
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000614999	hsa-miR-4685-3p	148532134	148532141	8mer-1a	148532134	148532155	140.00	-15.67
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6832-3p	148532136	148532143	8mer-1a	148532136	148532155	143.00	-8.39
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6867-3p	148532133	148532140	8mer-1a	148532133	148532153	147.00	-11.27
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000619423	hsa-miR-204-5p	148532136	148532142	7mer-m8	148532135	148532157	141.00	-11.65
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000619423	hsa-miR-211-5p	148532136	148532142	7mer-m8	148532135	148532157	141.00	-11.65
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000619423	hsa-miR-4287	148532134	148532141	8mer-1a	148532134	148532152	140.00	-14.47
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000619423	hsa-miR-4685-3p	148532134	148532141	8mer-1a	148532134	148532155	140.00	-15.67
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6832-3p	148532136	148532143	8mer-1a	148532136	148532155	143.00	-8.39
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6867-3p	148532133	148532140	8mer-1a	148532133	148532153	147.00	-11.27
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000621066	hsa-miR-204-5p	148532136	148532142	7mer-m8	148532135	148532157	141.00	-11.65
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000621066	hsa-miR-211-5p	148532136	148532142	7mer-m8	148532135	148532157	141.00	-11.65
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000621066	hsa-miR-4287	148532134	148532141	8mer-1a	148532134	148532152	140.00	-14.47
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000621066	hsa-miR-4685-3p	148532134	148532141	8mer-1a	148532134	148532155	140.00	-15.67
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6832-3p	148532136	148532143	8mer-1a	148532136	148532155	143.00	-8.39
CAediting_93299	chr1_148532139_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6867-3p	148532133	148532140	8mer-1a	148532133	148532153	147.00	-11.27
CAediting_93300	chr1_148532140_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6844	148532139	148532145	7mer-m8	148532138	148532159	155.00	-9.16
CAediting_93300	chr1_148532140_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6881-3p	148532136	148532142	7mer-m8	148532135	148532155	146.00	-11.27
CAediting_93300	chr1_148532140_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6844	148532139	148532145	7mer-m8	148532138	148532159	155.00	-9.16
CAediting_93300	chr1_148532140_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6881-3p	148532136	148532142	7mer-m8	148532135	148532155	146.00	-11.27
CAediting_93300	chr1_148532140_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6844	148532139	148532145	7mer-m8	148532138	148532159	155.00	-9.16
CAediting_93300	chr1_148532140_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6881-3p	148532136	148532142	7mer-m8	148532135	148532155	146.00	-11.27
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000614999	hsa-miR-1248	148532136	148532143	8mer-1a	148532136	148532163	155.00	-16.84
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000614999	hsa-miR-578	148532139	148532145	7mer-m8	148532138	148532156	148.00	-13.77
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6868-3p	148532136	148532142	7mer-m8	148532135	148532156	163.00	-20.50
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000619423	hsa-miR-1248	148532136	148532143	8mer-1a	148532136	148532163	155.00	-16.84
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000619423	hsa-miR-578	148532139	148532145	7mer-m8	148532138	148532156	148.00	-13.77
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6868-3p	148532136	148532142	7mer-m8	148532135	148532156	163.00	-20.50
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000621066	hsa-miR-1248	148532136	148532143	8mer-1a	148532136	148532163	155.00	-16.84
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000621066	hsa-miR-578	148532139	148532145	7mer-m8	148532138	148532156	148.00	-13.77
CAediting_93301	chr1_148532141_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6868-3p	148532136	148532142	7mer-m8	148532135	148532156	163.00	-20.50
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000614999	hsa-miR-199a-5p	148532200	148532206	7mer-m8	148532199	148532220	155.00	-24.90
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000614999	hsa-miR-199a-5p	148532200	148532206	7mer-m8	148532199	148532220	155.00	-24.90
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000614999	hsa-miR-199b-5p	148532200	148532206	7mer-m8	148532199	148532220	159.00	-24.04
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000619423	hsa-miR-199a-5p	148532200	148532206	7mer-m8	148532199	148532220	155.00	-24.90
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000619423	hsa-miR-199a-5p	148532200	148532206	7mer-m8	148532199	148532220	155.00	-24.90
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000619423	hsa-miR-199b-5p	148532200	148532206	7mer-m8	148532199	148532220	159.00	-24.04
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000621066	hsa-miR-199a-5p	148532200	148532206	7mer-m8	148532199	148532220	155.00	-24.90
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000621066	hsa-miR-199a-5p	148532200	148532206	7mer-m8	148532199	148532220	155.00	-24.90
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000621066	hsa-miR-199b-5p	148532200	148532206	7mer-m8	148532199	148532220	159.00	-24.04
CAediting_93290	chr1_148532063_-	ENSG00000270629.4	ENST00000614999	hsa-miR-1298-3p	148532060	148532067	8mer-1a	148532060	148532084	153.00	-16.65
CAediting_93290	chr1_148532063_-	ENSG00000270629.4	ENST00000614999	hsa-miR-7155-5p	148532062	148532069	8mer-1a	148532062	148532080	140.00	-15.65
CAediting_93290	chr1_148532063_-	ENSG00000270629.4	ENST00000619423	hsa-miR-1298-3p	148532060	148532067	8mer-1a	148532060	148532084	153.00	-16.65
CAediting_93290	chr1_148532063_-	ENSG00000270629.4	ENST00000619423	hsa-miR-7155-5p	148532062	148532069	8mer-1a	148532062	148532080	140.00	-15.65
CAediting_93291	chr1_148532070_-	ENSG00000270629.4	ENST00000614999	hsa-miR-615-5p	148532064	148532071	8mer-1a	148532064	148532085	144.00	-19.42
CAediting_93291	chr1_148532070_-	ENSG00000270629.4	ENST00000619423	hsa-miR-615-5p	148532064	148532071	8mer-1a	148532064	148532085	144.00	-19.42
CAediting_93293	chr1_148532104_-	ENSG00000270629.4	ENST00000614999	hsa-miR-4753-3p	148532101	148532107	7mer-m8	148532100	148532122	151.00	-12.86
CAediting_93293	chr1_148532104_-	ENSG00000270629.4	ENST00000619423	hsa-miR-4753-3p	148532101	148532107	7mer-m8	148532100	148532122	151.00	-12.86
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000614999	hsa-miR-1248	148532131	148532136	6mer	148532130	148532156	140.00	-13.07
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000614999	hsa-miR-188-5p	148532127	148532134	8mer-1a	148532127	148532147	140.00	-10.36
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000614999	hsa-miR-320a-5p	148532131	148532137	7mer-m8	148532130	148532151	151.00	-14.83
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000614999	hsa-miR-5088-3p	148532129	148532136	8mer-1a	148532129	148532149	148.00	-18.67
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6866-3p	148532127	148532134	8mer-1a	148532127	148532148	151.00	-13.87
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000619423	hsa-miR-1248	148532131	148532136	6mer	148532130	148532156	140.00	-13.07
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000619423	hsa-miR-188-5p	148532127	148532134	8mer-1a	148532127	148532147	140.00	-10.36
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000619423	hsa-miR-320a-5p	148532131	148532137	7mer-m8	148532130	148532151	151.00	-14.83
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000619423	hsa-miR-5088-3p	148532129	148532136	8mer-1a	148532129	148532149	148.00	-18.67
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6866-3p	148532127	148532134	8mer-1a	148532127	148532148	151.00	-13.87
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000621066	hsa-miR-1248	148532131	148532136	6mer	148532130	148532156	140.00	-13.07
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000621066	hsa-miR-188-5p	148532127	148532134	8mer-1a	148532127	148532147	140.00	-10.36
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000621066	hsa-miR-320a-5p	148532131	148532137	7mer-m8	148532130	148532151	151.00	-14.83
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000621066	hsa-miR-5088-3p	148532129	148532136	8mer-1a	148532129	148532149	148.00	-18.67
CAediting_93296	chr1_148532131_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6866-3p	148532127	148532134	8mer-1a	148532127	148532148	151.00	-13.87
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6717-5p	148532157	148532163	7mer-1a	148532157	148532179	151.00	-26.36
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6717-5p	148532157	148532163	7mer-1a	148532157	148532179	151.00	-26.36
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6717-5p	148532157	148532163	7mer-1a	148532157	148532179	151.00	-26.36
CAediting_93289	chr1_148532062_-	ENSG00000270629.4	ENST00000614999	hsa-miR-12126	148532060	148532067	8mer-1a	148532060	148532083	155.00	-17.45
CAediting_93289	chr1_148532062_-	ENSG00000270629.4	ENST00000619423	hsa-miR-12126	148532060	148532067	8mer-1a	148532060	148532083	155.00	-17.45

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_93308	chr1_148532197_-	ENSG00000270629.4	ENST00000614999	hsa-miR-1178-3p	148532197	148532202	6mer	148532196	148532216	140	-17.85
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000614999	hsa-miR-1178-3p	148532197	148532202	6mer	148532196	148532216	140	-17.85
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000614999	hsa-miR-3689a-5p	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000614999	hsa-miR-3689b-5p	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000614999	hsa-miR-3689e	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000614999	hsa-miR-3689f	148532159	148532165	7mer-m8	148532158	148532178	146	-10.66
CAediting_93310	chr1_148532204_-	ENSG00000270629.4	ENST00000614999	hsa-miR-4255	148532202	148532208	7mer-m8	148532201	148532217	140	-13.08
CAediting_93292	chr1_148532080_-	ENSG00000270629.4	ENST00000614999	hsa-miR-4744	148532079	148532085	7mer-m8	148532078	148532102	143	-11.93
CAediting_93290	chr1_148532063_-	ENSG00000270629.4	ENST00000614999	hsa-miR-5572	148532062	148532069	8mer-1a	148532062	148532082	150	-19.29
CAediting_93304	chr1_148532146_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6818-5p	148532145	148532152	8mer-1a	148532145	148532166	142	-10.87
CAediting_93305	chr1_148532148_-	ENSG00000270629.4	ENST00000614999	hsa-miR-6818-5p	148532145	148532152	8mer-1a	148532145	148532166	142	-10.87
CAediting_93308	chr1_148532197_-	ENSG00000270629.4	ENST00000614999	hsa-miR-767-3p	148532196	148532202	7mer-m8	148532195	148532218	144	-14.43
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000614999	hsa-miR-767-3p	148532196	148532202	7mer-m8	148532195	148532218	144	-14.43
CAediting_93305	chr1_148532148_-	ENSG00000270629.4	ENST00000614999	hsa-miR-8070	148532148	148532154	7mer-m8	148532147	148532167	147	-12.06
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000614999	hsa-miR-942-5p	148532131	148532137	7mer-1a	148532131	148532152	146	-20.42
CAediting_93298	chr1_148532136_-	ENSG00000270629.4	ENST00000614999	hsa-miR-942-5p	148532131	148532137	7mer-1a	148532131	148532152	146	-20.42
CAediting_93308	chr1_148532197_-	ENSG00000270629.4	ENST00000619423	hsa-miR-1178-3p	148532197	148532202	6mer	148532196	148532216	140	-17.85
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000619423	hsa-miR-1178-3p	148532197	148532202	6mer	148532196	148532216	140	-17.85
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000619423	hsa-miR-3689a-5p	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000619423	hsa-miR-3689b-5p	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000619423	hsa-miR-3689e	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000619423	hsa-miR-3689f	148532159	148532165	7mer-m8	148532158	148532178	146	-10.66
CAediting_93310	chr1_148532204_-	ENSG00000270629.4	ENST00000619423	hsa-miR-4255	148532202	148532208	7mer-m8	148532201	148532217	140	-13.08
CAediting_93292	chr1_148532080_-	ENSG00000270629.4	ENST00000619423	hsa-miR-4744	148532079	148532085	7mer-m8	148532078	148532102	143	-11.93
CAediting_93290	chr1_148532063_-	ENSG00000270629.4	ENST00000619423	hsa-miR-5572	148532062	148532069	8mer-1a	148532062	148532082	150	-19.29
CAediting_93304	chr1_148532146_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6818-5p	148532145	148532152	8mer-1a	148532145	148532166	142	-10.87
CAediting_93305	chr1_148532148_-	ENSG00000270629.4	ENST00000619423	hsa-miR-6818-5p	148532145	148532152	8mer-1a	148532145	148532166	142	-10.87
CAediting_93308	chr1_148532197_-	ENSG00000270629.4	ENST00000619423	hsa-miR-767-3p	148532196	148532202	7mer-m8	148532195	148532218	144	-14.43
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000619423	hsa-miR-767-3p	148532196	148532202	7mer-m8	148532195	148532218	144	-14.43
CAediting_93305	chr1_148532148_-	ENSG00000270629.4	ENST00000619423	hsa-miR-8070	148532148	148532154	7mer-m8	148532147	148532167	147	-12.06
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000619423	hsa-miR-942-5p	148532131	148532137	7mer-1a	148532131	148532152	146	-20.42
CAediting_93298	chr1_148532136_-	ENSG00000270629.4	ENST00000619423	hsa-miR-942-5p	148532131	148532137	7mer-1a	148532131	148532152	146	-20.42
CAediting_93308	chr1_148532197_-	ENSG00000270629.4	ENST00000621066	hsa-miR-1178-3p	148532197	148532202	6mer	148532196	148532216	140	-17.85
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000621066	hsa-miR-1178-3p	148532197	148532202	6mer	148532196	148532216	140	-17.85
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000621066	hsa-miR-3689a-5p	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000621066	hsa-miR-3689b-5p	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000621066	hsa-miR-3689e	148532159	148532165	7mer-m8	148532158	148532179	140	-10.31
CAediting_93307	chr1_148532160_-	ENSG00000270629.4	ENST00000621066	hsa-miR-3689f	148532159	148532165	7mer-m8	148532158	148532178	146	-10.66
CAediting_93310	chr1_148532204_-	ENSG00000270629.4	ENST00000621066	hsa-miR-4255	148532202	148532208	7mer-m8	148532201	148532217	140	-13.08
CAediting_93304	chr1_148532146_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6818-5p	148532145	148532152	8mer-1a	148532145	148532166	142	-10.87
CAediting_93305	chr1_148532148_-	ENSG00000270629.4	ENST00000621066	hsa-miR-6818-5p	148532145	148532152	8mer-1a	148532145	148532166	142	-10.87
CAediting_93308	chr1_148532197_-	ENSG00000270629.4	ENST00000621066	hsa-miR-767-3p	148532196	148532202	7mer-m8	148532195	148532218	144	-14.43
CAediting_93309	chr1_148532200_-	ENSG00000270629.4	ENST00000621066	hsa-miR-767-3p	148532196	148532202	7mer-m8	148532195	148532218	144	-14.43
CAediting_93305	chr1_148532148_-	ENSG00000270629.4	ENST00000621066	hsa-miR-8070	148532148	148532154	7mer-m8	148532147	148532167	147	-12.06
CAediting_93297	chr1_148532134_-	ENSG00000270629.4	ENST00000621066	hsa-miR-942-5p	148532131	148532137	7mer-1a	148532131	148532152	146	-20.42
CAediting_93298	chr1_148532136_-	ENSG00000270629.4	ENST00000621066	hsa-miR-942-5p	148532131	148532137	7mer-1a	148532131	148532152	146	-20.42

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000270629.4	ENST00000614999	hsa-miR-200b-3p	148532393	148532399	7mer-m8	148532392	148532413	149	-11.59
CAediting_393	chr1_1167164_+	ENSG00000270629.4	ENST00000619423	hsa-miR-200b-3p	148532393	148532399	7mer-m8	148532392	148532413	149	-11.59
CAediting_393	chr1_1167164_+	ENSG00000270629.4	ENST00000621066	hsa-miR-200b-3p	148532393	148532399	7mer-m8	148532392	148532413	149	-11.59
CAediting_1229413	chr17_67471544_+	ENSG00000270629.4	ENST00000614999	hsa-miR-548aa	148532616	148532623	8mer-1a	148532616	148532642	157	-16.24
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000614999	hsa-miR-641	148532689	148532695	7mer-m8	148532688	148532717	144	-19.81
CAediting_1229413	chr17_67471544_+	ENSG00000270629.4	ENST00000619423	hsa-miR-548aa	148532616	148532623	8mer-1a	148532616	148532642	157	-16.24
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000619423	hsa-miR-641	148532689	148532695	7mer-m8	148532688	148532717	144	-19.81
CAediting_1229413	chr17_67471544_+	ENSG00000270629.4	ENST00000621066	hsa-miR-548aa	148532616	148532623	8mer-1a	148532616	148532642	157	-16.24
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000621066	hsa-miR-641	148532689	148532695	7mer-m8	148532688	148532717	144	-19.81
CAediting_1229415	chr17_67471547_+	ENSG00000270629.4	ENST00000614329	hsa-miR-548aa	148551992	148551998	7mer-m8	148551991	148552014	153	-14.49
CAediting_1229415	chr17_67471547_+	ENSG00000270629.4	ENST00000616120	hsa-miR-548aa	148551992	148551998	7mer-m8	148551991	148552014	153	-14.49
CAediting_1229415	chr17_67471547_+	ENSG00000270629.4	ENST00000620240	hsa-miR-548aa	148551992	148551998	7mer-m8	148551991	148552014	153	-14.49

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000270629.4	ENST00000614999	hsa-miR-548aa	148531734	148531740	7mer-m8	148531733	148531765	152	-12.65
CAediting_1229413	chr17_67471544_+	ENSG00000270629.4	ENST00000614999	hsa-miR-548aa	148531426	148531432	7mer-m8	148531425	148531447	151	-11.21
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000614999	hsa-miR-641	148531946	148531952	7mer-m8	148531945	148531971	147	-15.43
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000614999	hsa-miR-641	148532588	148532593	6mer	148532587	148532611	140	-13.87
CAediting_1229413	chr17_67471544_+	ENSG00000270629.4	ENST00000619423	hsa-miR-548aa	148531734	148531740	7mer-m8	148531733	148531765	152	-12.65
CAediting_1229413	chr17_67471544_+	ENSG00000270629.4	ENST00000619423	hsa-miR-548aa	148531426	148531432	7mer-m8	148531425	148531447	151	-11.21
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000619423	hsa-miR-641	148531946	148531952	7mer-m8	148531945	148531971	147	-15.43
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000619423	hsa-miR-641	148532588	148532593	6mer	148532587	148532611	140	-13.87
CAediting_1351755	chr19_40282625_-	ENSG00000270629.4	ENST00000621066	hsa-miR-641	148532588	148532593	6mer	148532587	148532611	140	-13.87

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for NBPF14

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000614999.3	protein_coding
ENST00000619423.3	protein_coding
ENST00000621066.3	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_93289	ENST00000614999.3	chr1_148532062_-	-3235.99	-3235.99	-3233.59
CAediting_93290	ENST00000614999.3	chr1_148532063_-	-3236.09	-3235.99	-3233.59
CAediting_93291	ENST00000614999.3	chr1_148532070_-	-3235.49	-3235.99	-3233.59
CAediting_93292	ENST00000614999.3	chr1_148532080_-	-3236.09	-3235.99	-3233.59
CAediting_93293	ENST00000614999.3	chr1_148532104_-	-3239.39	-3235.99	-3233.59
CAediting_93294	ENST00000614999.3	chr1_148532115_-	-3236.09	-3235.99	-3233.59
CAediting_93295	ENST00000614999.3	chr1_148532127_-	-3235.99	-3235.99	-3233.59
CAediting_93296	ENST00000614999.3	chr1_148532131_-	-3234.99	-3235.99	-3233.59
CAediting_93297	ENST00000614999.3	chr1_148532134_-	-3235.09	-3235.99	-3233.59
CAediting_93298	ENST00000614999.3	chr1_148532136_-	-3235.39	-3235.99	-3233.59
CAediting_93299	ENST00000614999.3	chr1_148532139_-	-3235.69	-3235.99	-3233.59
CAediting_93300	ENST00000614999.3	chr1_148532140_-	-3236.09	-3235.99	-3233.59
CAediting_93301	ENST00000614999.3	chr1_148532141_-	-3236.09	-3235.99	-3233.59
CAediting_93302	ENST00000614999.3	chr1_148532143_-	-3235.69	-3235.99	-3233.59
CAediting_93303	ENST00000614999.3	chr1_148532145_-	-3235.99	-3235.99	-3233.59
CAediting_93304	ENST00000614999.3	chr1_148532146_-	-3235.69	-3235.99	-3233.59
CAediting_93305	ENST00000614999.3	chr1_148532148_-	-3235.59	-3235.99	-3233.59
CAediting_93306	ENST00000614999.3	chr1_148532154_-	-3235.99	-3235.99	-3233.59
CAediting_93307	ENST00000614999.3	chr1_148532160_-	-3235.59	-3235.99	-3233.59
CAediting_93308	ENST00000614999.3	chr1_148532197_-	-3238.59	-3235.99	-3233.59
CAediting_93309	ENST00000614999.3	chr1_148532200_-	-3235.09	-3235.99	-3233.59
CAediting_93310	ENST00000614999.3	chr1_148532204_-	-3235.29	-3235.99	-3233.59
CAediting_93289	ENST00000619423.3	chr1_148532062_-	-3469.09	-3469.09	-3466.69
CAediting_93290	ENST00000619423.3	chr1_148532063_-	-3469.19	-3469.09	-3466.69
CAediting_93291	ENST00000619423.3	chr1_148532070_-	-3468.59	-3469.09	-3466.69
CAediting_93292	ENST00000619423.3	chr1_148532080_-	-3469.19	-3469.09	-3466.69
CAediting_93293	ENST00000619423.3	chr1_148532104_-	-3472.49	-3469.09	-3466.69
CAediting_93294	ENST00000619423.3	chr1_148532115_-	-3469.19	-3469.09	-3466.69
CAediting_93295	ENST00000619423.3	chr1_148532127_-	-3469.09	-3469.09	-3466.69
CAediting_93296	ENST00000619423.3	chr1_148532131_-	-3468.09	-3469.09	-3466.69
CAediting_93297	ENST00000619423.3	chr1_148532134_-	-3468.19	-3469.09	-3466.69
CAediting_93298	ENST00000619423.3	chr1_148532136_-	-3468.49	-3469.09	-3466.69
CAediting_93299	ENST00000619423.3	chr1_148532139_-	-3468.79	-3469.09	-3466.69
CAediting_93300	ENST00000619423.3	chr1_148532140_-	-3469.19	-3469.09	-3466.69
CAediting_93301	ENST00000619423.3	chr1_148532141_-	-3469.19	-3469.09	-3466.69
CAediting_93302	ENST00000619423.3	chr1_148532143_-	-3468.79	-3469.09	-3466.69
CAediting_93303	ENST00000619423.3	chr1_148532145_-	-3469.09	-3469.09	-3466.69
CAediting_93304	ENST00000619423.3	chr1_148532146_-	-3468.79	-3469.09	-3466.69
CAediting_93305	ENST00000619423.3	chr1_148532148_-	-3468.69	-3469.09	-3466.69
CAediting_93306	ENST00000619423.3	chr1_148532154_-	-3469.09	-3469.09	-3466.69
CAediting_93307	ENST00000619423.3	chr1_148532160_-	-3468.69	-3469.09	-3466.69
CAediting_93308	ENST00000619423.3	chr1_148532197_-	-3471.69	-3469.09	-3466.69
CAediting_93309	ENST00000619423.3	chr1_148532200_-	-3468.19	-3469.09	-3466.69
CAediting_93310	ENST00000619423.3	chr1_148532204_-	-3468.39	-3469.09	-3466.69
CAediting_93295	ENST00000621066.3	chr1_148532127_-	-1160.30	-1159.90	-1175.90
CAediting_93296	ENST00000621066.3	chr1_148532131_-	-1161.60	-1159.90	-1175.90
CAediting_93297	ENST00000621066.3	chr1_148532134_-	-1161.21	-1159.90	-1175.90
CAediting_93298	ENST00000621066.3	chr1_148532136_-	-1159.90	-1159.90	-1175.90
CAediting_93299	ENST00000621066.3	chr1_148532139_-	-1159.90	-1159.90	-1175.90
CAediting_93300	ENST00000621066.3	chr1_148532140_-	-1159.90	-1159.90	-1175.90
CAediting_93301	ENST00000621066.3	chr1_148532141_-	-1161.50	-1159.90	-1175.90
CAediting_93302	ENST00000621066.3	chr1_148532143_-	-1159.90	-1159.90	-1175.90
CAediting_93303	ENST00000621066.3	chr1_148532145_-	-1161.10	-1159.90	-1175.90
CAediting_93304	ENST00000621066.3	chr1_148532146_-	-1159.90	-1159.90	-1175.90
CAediting_93305	ENST00000621066.3	chr1_148532148_-	-1159.90	-1159.90	-1175.90
CAediting_93306	ENST00000621066.3	chr1_148532154_-	-1160.00	-1159.90	-1175.90
CAediting_93307	ENST00000621066.3	chr1_148532160_-	-1160.20	-1159.90	-1175.90
CAediting_93308	ENST00000621066.3	chr1_148532197_-	-1161.20	-1159.90	-1175.90
CAediting_93309	ENST00000621066.3	chr1_148532200_-	-1164.00	-1159.90	-1175.90
CAediting_93310	ENST00000621066.3	chr1_148532204_-	-1162.10	-1159.90	-1175.90

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Relation with ADAR for NBPF14

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_93299	chr1_148532139_-	0.00199716526622326	0.238218242979976	.	.	.	.
LGG	CAediting_93299	chr1_148532139_-	.	.	0.0230038284251128	0.133706182996632	0.0465279726973637	0.11719657479841
BRCA	CAediting_93299	chr1_148532139_-	1.02273706147211e-23	0.351663584778273	.	.	.	.
LIHC	CAediting_93299	chr1_148532139_-	0.00505920931748399	0.195094795048157	.	.	.	.
CESC	CAediting_93299	chr1_148532139_-	0.00287924058543857	0.245822361080012	.	.	0.0220426489131408	0.190052078268896
LUAD	CAediting_93299	chr1_148532139_-	5.598910077224e-06	0.267607912755872	.	.	.	.
LUSC	CAediting_93299	chr1_148532139_-	0.00829773911774369	0.189029892871518	.	.	.	.
PRAD	CAediting_93299	chr1_148532139_-	0.0274833409266925	0.133934067350753	.	.	.	.
HNSC	CAediting_93299	chr1_148532139_-	0.00494812180983607	0.197505117781281	.	.	.	.
THCA	CAediting_93299	chr1_148532139_-	0.0133689224153075	0.158506319551289	.	.	.	.
UCEC	CAediting_93299	chr1_148532139_-	0.00494878007142357	0.315145773585138	.	.	.	.
SARC	CAediting_93299	chr1_148532139_-	0.0035022058523222	0.223414506357639	0.00360518420160925	0.222740025239086	.	.
TGCT	CAediting_93299	chr1_148532139_-	0.000413353764016659	0.448560532158229	.	.	.	.
LIHC	CAediting_93301	chr1_148532141_-	0.0431776016597488	0.191436616863176	.	.	.	.
BRCA	CAediting_93308	chr1_148532197_-	0.0376474645313678	0.143213966329934	.	.	.	.
LGG	CAediting_93309	chr1_148532200_-	.	.	.	.	0.0133694854541049	0.205022913850328
BRCA	CAediting_93309	chr1_148532200_-	2.34346119818158e-05	0.227528399976494	.	.	.	.
LUAD	CAediting_93309	chr1_148532200_-	0.0103882594589479	0.349174450478378	.	.	.	.

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Relation with cancer stages for NBPF14

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_93299	chr1_148532139_-	0.00415415142869606	0.104200723365755
BRCA	pathologic_stage	CAediting_93301	chr1_148532141_-	0.0247668989769652	0.132976757868905
HNSC	pathologic_stage	CAediting_93301	chr1_148532141_-	0.0217393002407449	0.275926481187216
OV	clinical_stage	CAediting_93291	chr1_148532070_-	0.0244850403025991	-0.297747987404727
THCA	pathologic_stage	CAediting_93299	chr1_148532139_-	0.00185212818454816	0.199952375585889

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Relation with survival for NBPF14

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for NBPF14

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for NBPF14

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene