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Editing gene: TAB3 (CAeditome ID:257397)

Gene summary for TAB3

Gene summary

Gene information	Gene symbol	TAB3
	Gene ID	257397
	Gene name	TGF-beta activated kinase 1 (MAP3K7) binding protein 3
	Synonyms	MAP3K7IP3\|NAP1
	Cytomap	Xp21.2
	Type of gene	protein-coding
	Description	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3NF-kappa-B-activating protein 1NFkB activating protein 1TAB-3TAK1-binding protein 3TGF-beta activated kinase 1 and MAP3K7 binding protein 3TGF-beta-activated kinase 1-binding protein 3mitogen-
	Modification date	20210524
	UniProtAcc	Q8N5C8
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
TAB3	GO:0008270	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3	22158122
TAB3	GO:0070530	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3	15327770
TAB3	GO:0070530	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3	22158122
TAB3	GO:0000187	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3	15327770
TAB3	GO:0000187	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3	22158122
TAB3	GO:0043123	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3	15327770
TAB3	GO:0043123	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3	22158122

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RNA A-to-I events for TAB3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000157625.14

RNA A-to-I editing events in Cancer.

CAediting_1503701(30833000, -), CAediting_1503702(30833054, -), CAediting_1503703(30833099, -), CAediting_1503704(30833135, -), CAediting_1503705(30834621, -), CAediting_1503706(30836578, -), CAediting_1503707(30836580, -), CAediting_1503708(30836584, -), CAediting_1503709(30836598, -), CAediting_1503710(30836599, -), CAediting_1503711(30836621, -), CAediting_1503712(30836625, -), CAediting_1503713(30836626, -), CAediting_1503714(30836638, -), CAediting_1503715(30836639, -), CAediting_1503716(30836640, -), CAediting_1503717(30836671, -), CAediting_1503718(30836675, -), CAediting_1503719(30836686, -), CAediting_1503720(30836695, -), CAediting_1503721(30836708, -), CAediting_1503722(30836711, -), CAediting_1503723(30836719, -), CAediting_1503724(30836724, -), CAediting_1503725(30836731, -), CAediting_1503726(30836734, -), CAediting_1503727(30836743, -), CAediting_1503728(30836756, -), CAediting_1503729(30836760, -), CAediting_1503730(30836761, -), CAediting_1503731(30836767, -), CAediting_1503732(30836774, -), CAediting_1503733(30836781, -), CAediting_1503734(30836817, -), CAediting_1503735(30836837, -), CAediting_1503736(30837121, -), CAediting_1503737(30837145, -), CAediting_1503738(30837146, -), CAediting_1503739(30837151, -), CAediting_1503740(30837157, -), CAediting_1503741(30837158, -), CAediting_1503742(30837186, -), CAediting_1503743(30837213, -), CAediting_1503744(30837222, -), CAediting_1503745(30837226, -), CAediting_1503746(30837227, -), CAediting_1503747(30837228, -), CAediting_1503748(30837231, -), CAediting_1503749(30837252, -), CAediting_1503750(30837262, -), CAediting_1503751(30837265, -), CAediting_1503752(30837267, -), CAediting_1503753(30837286, -), CAediting_1503754(30837328, -), CAediting_1503755(30837334, -), CAediting_1503756(30838213, -), CAediting_1503757(30838433, -), CAediting_1503758(30838435, -), CAediting_1503759(30838442, -), CAediting_1503760(30838443, -), CAediting_1503761(30841241, -), CAediting_1503762(30841307, -), CAediting_1503763(30841851, -), CAediting_1503764(30841911, -), CAediting_1503765(30842764, -),

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RNA editing positional annotations for TAB3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1503701	chrX_30833000_-	intronic
CAediting_1503702	chrX_30833054_-	intronic
CAediting_1503703	chrX_30833099_-	intronic
CAediting_1503704	chrX_30833135_-	intronic
CAediting_1503705	chrX_30834621_-	UTR3
CAediting_1503706	chrX_30836578_-	UTR3
CAediting_1503707	chrX_30836580_-	UTR3
CAediting_1503708	chrX_30836584_-	UTR3
CAediting_1503709	chrX_30836598_-	UTR3
CAediting_1503710	chrX_30836599_-	UTR3
CAediting_1503711	chrX_30836621_-	UTR3
CAediting_1503712	chrX_30836625_-	UTR3
CAediting_1503713	chrX_30836626_-	UTR3
CAediting_1503714	chrX_30836638_-	UTR3
CAediting_1503715	chrX_30836639_-	UTR3
CAediting_1503716	chrX_30836640_-	UTR3
CAediting_1503717	chrX_30836671_-	UTR3
CAediting_1503718	chrX_30836675_-	UTR3
CAediting_1503719	chrX_30836686_-	UTR3
CAediting_1503720	chrX_30836695_-	UTR3
CAediting_1503721	chrX_30836708_-	UTR3
CAediting_1503722	chrX_30836711_-	UTR3
CAediting_1503723	chrX_30836719_-	UTR3
CAediting_1503724	chrX_30836724_-	UTR3
CAediting_1503725	chrX_30836731_-	UTR3
CAediting_1503726	chrX_30836734_-	UTR3
CAediting_1503727	chrX_30836743_-	UTR3
CAediting_1503728	chrX_30836756_-	UTR3
CAediting_1503729	chrX_30836760_-	UTR3
CAediting_1503730	chrX_30836761_-	UTR3
CAediting_1503731	chrX_30836767_-	UTR3
CAediting_1503732	chrX_30836774_-	UTR3
CAediting_1503733	chrX_30836781_-	UTR3
CAediting_1503734	chrX_30836817_-	UTR3
CAediting_1503735	chrX_30836837_-	splicing
CAediting_1503736	chrX_30837121_-	intronic
CAediting_1503737	chrX_30837145_-	intronic
CAediting_1503738	chrX_30837146_-	intronic
CAediting_1503739	chrX_30837151_-	intronic
CAediting_1503740	chrX_30837157_-	intronic
CAediting_1503741	chrX_30837158_-	intronic
CAediting_1503742	chrX_30837186_-	intronic
CAediting_1503743	chrX_30837213_-	intronic
CAediting_1503744	chrX_30837222_-	intronic
CAediting_1503745	chrX_30837226_-	intronic
CAediting_1503746	chrX_30837227_-	intronic
CAediting_1503747	chrX_30837228_-	intronic
CAediting_1503748	chrX_30837231_-	intronic
CAediting_1503749	chrX_30837252_-	intronic
CAediting_1503750	chrX_30837262_-	intronic
CAediting_1503751	chrX_30837265_-	intronic
CAediting_1503752	chrX_30837267_-	intronic
CAediting_1503753	chrX_30837286_-	intronic
CAediting_1503754	chrX_30837328_-	intronic
CAediting_1503755	chrX_30837334_-	intronic
CAediting_1503756	chrX_30838213_-	intronic
CAediting_1503757	chrX_30838433_-	intronic
CAediting_1503758	chrX_30838435_-	intronic
CAediting_1503759	chrX_30838442_-	intronic
CAediting_1503760	chrX_30838443_-	intronic
CAediting_1503761	chrX_30841241_-	intronic
CAediting_1503762	chrX_30841307_-	intronic
CAediting_1503763	chrX_30841851_-	intronic
CAediting_1503764	chrX_30841911_-	intronic
CAediting_1503765	chrX_30842764_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1503701	chrX_30833000_-	SINE	Alu	AluY
CAediting_1503702	chrX_30833054_-	SINE	Alu	AluY
CAediting_1503703	chrX_30833099_-	SINE	Alu	AluY
CAediting_1503704	chrX_30833135_-	SINE	Alu	AluY
CAediting_1503705	chrX_30834621_-	SINE	Alu	AluJr
CAediting_1503706	chrX_30836578_-	SINE	Alu	AluJb
CAediting_1503707	chrX_30836580_-	SINE	Alu	AluJb
CAediting_1503708	chrX_30836584_-	SINE	Alu	AluJb
CAediting_1503709	chrX_30836598_-	SINE	Alu	AluJb
CAediting_1503710	chrX_30836599_-	SINE	Alu	AluJb
CAediting_1503711	chrX_30836621_-	SINE	Alu	AluJb
CAediting_1503712	chrX_30836625_-	SINE	Alu	AluJb
CAediting_1503713	chrX_30836626_-	SINE	Alu	AluJb
CAediting_1503714	chrX_30836638_-	SINE	Alu	AluJb
CAediting_1503715	chrX_30836639_-	SINE	Alu	AluJb
CAediting_1503716	chrX_30836640_-	SINE	Alu	AluJb
CAediting_1503717	chrX_30836671_-	SINE	Alu	AluJb
CAediting_1503718	chrX_30836675_-	SINE	Alu	AluJb
CAediting_1503719	chrX_30836686_-	SINE	Alu	AluJb
CAediting_1503720	chrX_30836695_-	SINE	Alu	AluJb
CAediting_1503721	chrX_30836708_-	SINE	Alu	AluJb
CAediting_1503722	chrX_30836711_-	SINE	Alu	AluJb
CAediting_1503723	chrX_30836719_-	SINE	Alu	AluJb
CAediting_1503724	chrX_30836724_-	SINE	Alu	AluJb
CAediting_1503725	chrX_30836731_-	SINE	Alu	AluJb
CAediting_1503726	chrX_30836734_-	SINE	Alu	AluJb
CAediting_1503727	chrX_30836743_-	SINE	Alu	AluJb
CAediting_1503728	chrX_30836756_-	SINE	Alu	AluJb
CAediting_1503729	chrX_30836760_-	SINE	Alu	AluJb
CAediting_1503730	chrX_30836761_-	SINE	Alu	AluJb
CAediting_1503731	chrX_30836767_-	SINE	Alu	AluJb
CAediting_1503732	chrX_30836774_-	SINE	Alu	AluJb
CAediting_1503733	chrX_30836781_-	SINE	Alu	AluJb
CAediting_1503734	chrX_30836817_-	SINE	Alu	AluJb
CAediting_1503735	chrX_30836837_-	SINE	Alu	AluJb
CAediting_1503736	chrX_30837121_-	SINE	Alu	AluSz
CAediting_1503737	chrX_30837145_-	SINE	Alu	AluSz
CAediting_1503738	chrX_30837146_-	SINE	Alu	AluSz
CAediting_1503739	chrX_30837151_-	SINE	Alu	AluSz
CAediting_1503740	chrX_30837157_-	SINE	Alu	AluSz
CAediting_1503741	chrX_30837158_-	SINE	Alu	AluSz
CAediting_1503742	chrX_30837186_-	SINE	Alu	AluSz
CAediting_1503743	chrX_30837213_-	SINE	Alu	AluSz
CAediting_1503744	chrX_30837222_-	SINE	Alu	AluSz
CAediting_1503745	chrX_30837226_-	SINE	Alu	AluSz
CAediting_1503746	chrX_30837227_-	SINE	Alu	AluSz
CAediting_1503747	chrX_30837228_-	SINE	Alu	AluSz
CAediting_1503748	chrX_30837231_-	SINE	Alu	AluSz
CAediting_1503749	chrX_30837252_-	SINE	Alu	AluSz
CAediting_1503750	chrX_30837262_-	SINE	Alu	AluSz
CAediting_1503751	chrX_30837265_-	SINE	Alu	AluSz
CAediting_1503752	chrX_30837267_-	SINE	Alu	AluSz
CAediting_1503753	chrX_30837286_-	SINE	Alu	AluSz
CAediting_1503754	chrX_30837328_-	SINE	Alu	AluSz
CAediting_1503755	chrX_30837334_-	SINE	Alu	AluSz
CAediting_1503756	chrX_30838213_-	SINE	Alu	AluJb
CAediting_1503757	chrX_30838433_-	SINE	Alu	AluJb
CAediting_1503758	chrX_30838435_-	SINE	Alu	AluJb
CAediting_1503759	chrX_30838442_-	SINE	Alu	AluJb
CAediting_1503760	chrX_30838443_-	SINE	Alu	AluJb
CAediting_1503761	chrX_30841241_-	SINE	Alu	AluSx1
CAediting_1503762	chrX_30841307_-	SINE	Alu	AluSx1
CAediting_1503763	chrX_30841851_-	SINE	Alu	AluSz6
CAediting_1503764	chrX_30841911_-	SINE	Alu	AluSz6
CAediting_1503765	chrX_30842764_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for TAB3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1503735	chrX_30836837_-	30836833:30836855	3SS	0+2i	TTGTTTTTGTTTTGAGACAGGGT	3.7	TTGTTTTTGTTTTGAGACGGGGT	-4.26

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000157625.14.TAB3.

Correlation between RNA A-to-I editing and PSI for ENSG00000157625.14.TAB3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TAB3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LIHC.CAediting_1503723.ENSG00000157625.TAB3.png
Soverview

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Protein coding region RNA A-to-I editings for TAB3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TAB3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1503709	chrX_30836598_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3189-3p	30836597	30836603	7mer-m8	30836596	30836618	142.00	-24.25
CAediting_1503709	chrX_30836598_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6813-3p	30836596	30836602	7mer-m8	30836595	30836615	140.00	-12.88
CAediting_1503713	chrX_30836626_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6512-3p	30836625	30836631	7mer-m8	30836624	30836645	145.00	-19.90
CAediting_1503713	chrX_30836626_-	ENSG00000157625.14	ENST00000467136	hsa-miR-766-3p	30836624	30836630	7mer-m8	30836623	30836644	152.00	-20.77
CAediting_1503717	chrX_30836671_-	ENSG00000157625.14	ENST00000467136	hsa-miR-340-3p	30836670	30836676	7mer-m8	30836669	30836690	141.00	-16.12
CAediting_1503717	chrX_30836671_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6827-3p	30836670	30836676	7mer-m8	30836669	30836689	143.00	-15.58
CAediting_1503724	chrX_30836724_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4323	30836721	30836728	8mer-1a	30836721	30836738	148.00	-20.43
CAediting_1503725	chrX_30836731_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4691-3p	30836727	30836733	7mer-m8	30836726	30836753	142.00	-25.13
CAediting_1503729	chrX_30836760_-	ENSG00000157625.14	ENST00000467136	hsa-miR-1199-5p	30836760	30836766	7mer-m8	30836759	30836778	152.00	-26.27
CAediting_1503729	chrX_30836760_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6751-3p	30836760	30836766	7mer-m8	30836759	30836779	145.00	-14.31
CAediting_1503731	chrX_30836767_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3940-3p	30836763	30836769	7mer-m8	30836762	30836783	140.00	-14.50
CAediting_1503710	chrX_30836599_-	ENSG00000157625.14	ENST00000467136	hsa-miR-326	30836597	30836603	7mer-m8	30836596	30836615	140.00	-15.33
CAediting_1503710	chrX_30836599_-	ENSG00000157625.14	ENST00000467136	hsa-miR-330-5p	30836597	30836603	7mer-m8	30836596	30836617	140.00	-22.45
CAediting_1503710	chrX_30836599_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4314	30836598	30836604	7mer-m8	30836597	30836614	140.00	-18.79
CAediting_1503710	chrX_30836599_-	ENSG00000157625.14	ENST00000467136	hsa-miR-514a-5p	30836596	30836602	7mer-m8	30836595	30836615	154.00	-19.31
CAediting_1503710	chrX_30836599_-	ENSG00000157625.14	ENST00000467136	hsa-miR-514a-5p	30836596	30836602	7mer-m8	30836595	30836615	154.00	-19.31
CAediting_1503710	chrX_30836599_-	ENSG00000157625.14	ENST00000467136	hsa-miR-514a-5p	30836596	30836602	7mer-m8	30836595	30836615	154.00	-19.31
CAediting_1503714	chrX_30836638_-	ENSG00000157625.14	ENST00000467136	hsa-miR-28-5p	30836633	30836639	7mer-m8	30836632	30836652	143.00	-17.81
CAediting_1503714	chrX_30836638_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3139	30836633	30836639	7mer-m8	30836632	30836654	153.00	-22.60
CAediting_1503714	chrX_30836638_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4538	30836636	30836641	6mer	30836635	30836658	145.00	-29.14
CAediting_1503714	chrX_30836638_-	ENSG00000157625.14	ENST00000467136	hsa-miR-708-5p	30836633	30836639	7mer-m8	30836632	30836653	154.00	-23.42
CAediting_1503715	chrX_30836639_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4294	30836634	30836640	7mer-m8	30836633	30836650	150.00	-18.29
CAediting_1503715	chrX_30836639_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4329	30836638	30836645	8mer-1a	30836638	30836654	149.00	-17.49
CAediting_1503719	chrX_30836686_-	ENSG00000157625.14	ENST00000467136	hsa-miR-8485	30836685	30836691	7mer-m8	30836684	30836704	142.00	-9.85
CAediting_1503720	chrX_30836695_-	ENSG00000157625.14	ENST00000467136	hsa-miR-34a-3p	30836692	30836698	7mer-m8	30836691	30836712	140.00	-8.35
CAediting_1503726	chrX_30836734_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4726-3p	30836733	30836739	7mer-m8	30836732	30836752	146.00	-20.97
CAediting_1503734	chrX_30836817_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3940-3p	30836813	30836819	7mer-m8	30836812	30836833	147.00	-22.47

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1503733	chrX_30836781_-	ENSG00000157625.14	ENST00000467136	hsa-miR-106a-3p	30836781	30836787	7mer-m8	30836780	30836799	142	-14.63
CAediting_1503717	chrX_30836671_-	ENSG00000157625.14	ENST00000467136	hsa-miR-10a-5p	30836667	30836673	7mer-m8	30836666	30836688	145	-19.07
CAediting_1503717	chrX_30836671_-	ENSG00000157625.14	ENST00000467136	hsa-miR-10b-5p	30836667	30836673	7mer-m8	30836666	30836688	141	-16.14
CAediting_1503734	chrX_30836817_-	ENSG00000157625.14	ENST00000467136	hsa-miR-1285-3p	30836816	30836821	6mer	30836815	30836835	148	-28.39
CAediting_1503734	chrX_30836817_-	ENSG00000157625.14	ENST00000467136	hsa-miR-1285-3p	30836816	30836821	6mer	30836815	30836835	148	-28.39
CAediting_1503728	chrX_30836756_-	ENSG00000157625.14	ENST00000467136	hsa-miR-135a-5p	30836755	30836761	7mer-m8	30836754	30836776	140	-10.57
CAediting_1503729	chrX_30836760_-	ENSG00000157625.14	ENST00000467136	hsa-miR-135a-5p	30836755	30836761	7mer-m8	30836754	30836776	140	-10.57
CAediting_1503728	chrX_30836756_-	ENSG00000157625.14	ENST00000467136	hsa-miR-135a-5p	30836755	30836761	7mer-m8	30836754	30836776	140	-10.57
CAediting_1503729	chrX_30836760_-	ENSG00000157625.14	ENST00000467136	hsa-miR-135a-5p	30836755	30836761	7mer-m8	30836754	30836776	140	-10.57
CAediting_1503728	chrX_30836756_-	ENSG00000157625.14	ENST00000467136	hsa-miR-135b-5p	30836755	30836761	7mer-m8	30836754	30836776	140	-11.51
CAediting_1503729	chrX_30836760_-	ENSG00000157625.14	ENST00000467136	hsa-miR-135b-5p	30836755	30836761	7mer-m8	30836754	30836776	140	-11.51
CAediting_1503723	chrX_30836719_-	ENSG00000157625.14	ENST00000467136	hsa-miR-20b-3p	30836717	30836724	8mer-1a	30836717	30836739	153	-18.13
CAediting_1503722	chrX_30836711_-	ENSG00000157625.14	ENST00000467136	hsa-miR-210-3p	30836711	30836717	7mer-m8	30836710	30836736	150	-21.1
CAediting_1503728	chrX_30836756_-	ENSG00000157625.14	ENST00000467136	hsa-miR-2392	30836752	30836758	7mer-m8	30836751	30836775	148	-20.92
CAediting_1503717	chrX_30836671_-	ENSG00000157625.14	ENST00000467136	hsa-miR-339-5p	30836668	30836674	7mer-m8	30836667	30836691	155	-26.16
CAediting_1503722	chrX_30836711_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3650	30836708	30836714	7mer-1a	30836708	30836728	141	-25.66
CAediting_1503731	chrX_30836767_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3689a-3p	30836767	30836773	7mer-m8	30836766	30836786	147	-23.13
CAediting_1503731	chrX_30836767_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3689b-3p	30836767	30836773	7mer-m8	30836766	30836786	154	-24.83
CAediting_1503731	chrX_30836767_-	ENSG00000157625.14	ENST00000467136	hsa-miR-3689c	30836767	30836773	7mer-m8	30836766	30836786	154	-24.83
CAediting_1503734	chrX_30836817_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4486	30836816	30836821	6mer	30836815	30836833	146	-21.24
CAediting_1503724	chrX_30836724_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4540	30836721	30836726	6mer	30836720	30836742	141	-17.53
CAediting_1503706	chrX_30836578_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4633-5p	30836577	30836584	8mer-1a	30836577	30836597	146	-15.43
CAediting_1503707	chrX_30836580_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4633-5p	30836577	30836584	8mer-1a	30836577	30836597	146	-15.43
CAediting_1503727	chrX_30836743_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4649-3p	30836742	30836748	7mer-m8	30836741	30836761	140	-14.11
CAediting_1503733	chrX_30836781_-	ENSG00000157625.14	ENST00000467136	hsa-miR-485-5p	30836776	30836782	7mer-m8	30836775	30836795	150	-15.76
CAediting_1503726	chrX_30836734_-	ENSG00000157625.14	ENST00000467136	hsa-miR-510-5p	30836731	30836738	8mer-1a	30836731	30836754	148	-18.39
CAediting_1503718	chrX_30836675_-	ENSG00000157625.14	ENST00000467136	hsa-miR-515-5p	30836673	30836678	6mer	30836672	30836696	141	-15.39
CAediting_1503718	chrX_30836675_-	ENSG00000157625.14	ENST00000467136	hsa-miR-515-5p	30836673	30836678	6mer	30836672	30836696	141	-15.39
CAediting_1503724	chrX_30836724_-	ENSG00000157625.14	ENST00000467136	hsa-miR-5588-3p	30836721	30836728	8mer-1a	30836721	30836740	148	-17.06
CAediting_1503725	chrX_30836731_-	ENSG00000157625.14	ENST00000467136	hsa-miR-5690	30836727	30836733	7mer-m8	30836726	30836746	145	-17.72
CAediting_1503717	chrX_30836671_-	ENSG00000157625.14	ENST00000467136	hsa-miR-5699-3p	30836669	30836675	7mer-m8	30836668	30836689	144	-16.39
CAediting_1503707	chrX_30836580_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6514-3p	30836580	30836586	7mer-m8	30836579	30836599	147	-13.92
CAediting_1503708	chrX_30836584_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6514-3p	30836580	30836586	7mer-m8	30836579	30836599	147	-13.92
CAediting_1503734	chrX_30836817_-	ENSG00000157625.14	ENST00000467136	hsa-miR-661	30836814	30836820	7mer-m8	30836813	30836835	150	-22.08
CAediting_1503717	chrX_30836671_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6732-3p	30836666	30836672	7mer-m8	30836665	30836687	155	-19.44
CAediting_1503727	chrX_30836743_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6765-5p	30836743	30836748	6mer	30836742	30836763	147	-26.74
CAediting_1503731	chrX_30836767_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6779-5p	30836767	30836773	7mer-m8	30836766	30836785	147	-26.12
CAediting_1503731	chrX_30836767_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6780a-5p	30836767	30836773	7mer-m8	30836766	30836786	145	-24.81
CAediting_1503733	chrX_30836781_-	ENSG00000157625.14	ENST00000467136	hsa-miR-6884-5p	30836776	30836782	7mer-m8	30836775	30836797	154	-20.23
CAediting_1503727	chrX_30836743_-	ENSG00000157625.14	ENST00000467136	hsa-miR-7160-5p	30836741	30836747	7mer-m8	30836740	30836759	149	-18.21
CAediting_1503724	chrX_30836724_-	ENSG00000157625.14	ENST00000467136	hsa-miR-7977	30836724	30836730	7mer-m8	30836723	30836739	145	-12.78
CAediting_1503710	chrX_30836599_-	ENSG00000157625.14	ENST00000467136	hsa-miR-887-5p	30836598	30836605	8mer-1a	30836598	30836619	148	-17.91
CAediting_1503734	chrX_30836817_-	ENSG00000157625.14	ENST00000467136	hsa-miR-939-3p	30836815	30836821	7mer-m8	30836814	30836834	141	-15.42

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000157625.14	ENST00000467136	hsa-miR-624-3p	30834817	30834823	7mer-m8	30834816	30834838	147	-16.3
CAediting_980496	chr14_31014685_-	ENSG00000157625.14	ENST00000467136	hsa-miR-624-3p	30834642	30834648	7mer-m8	30834641	30834661	156	-14.34
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30829443	30829450	8mer-1a	30829443	30829467	142	-10.41
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30829165	30829172	8mer-1a	30829165	30829191	158	-12.92
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30831296	30831302	7mer-m8	30831295	30831316	151	-15.23
CAediting_1351755	chr19_40282625_-	ENSG00000157625.14	ENST00000378933	hsa-miR-641	30829502	30829507	6mer	30829501	30829524	141	-16.45
CAediting_1351755	chr19_40282625_-	ENSG00000157625.14	ENST00000378933	hsa-miR-641	30827596	30827602	7mer-m8	30827595	30827618	149	-16.41
CAediting_86358	chr1_109598906_+	ENSG00000157625.14	ENST00000378933	hsa-miR-197-5p	30831340	30831347	8mer-1a	30831340	30831363	152	-20.98
CAediting_442554	chr5_154685830_+	ENSG00000157625.14	ENST00000378933	hsa-miR-1303	30829499	30829505	7mer-m8	30829498	30829519	162	-21.96
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30829443	30829450	8mer-1a	30829443	30829467	142	-10.41
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30829165	30829172	8mer-1a	30829165	30829191	158	-12.92
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30831296	30831302	7mer-m8	30831295	30831316	151	-15.23
CAediting_1351755	chr19_40282625_-	ENSG00000157625.14	ENST00000378930	hsa-miR-641	30829502	30829507	6mer	30829501	30829524	141	-16.45
CAediting_1351755	chr19_40282625_-	ENSG00000157625.14	ENST00000378930	hsa-miR-641	30827596	30827602	7mer-m8	30827595	30827618	149	-16.41
CAediting_86358	chr1_109598906_+	ENSG00000157625.14	ENST00000378930	hsa-miR-197-5p	30831340	30831347	8mer-1a	30831340	30831363	152	-20.98
CAediting_442554	chr5_154685830_+	ENSG00000157625.14	ENST00000378930	hsa-miR-1303	30829499	30829505	7mer-m8	30829498	30829519	162	-21.96
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378932	hsa-miR-548aa	30831296	30831302	7mer-m8	30831295	30831316	151	-15.23
CAediting_86358	chr1_109598906_+	ENSG00000157625.14	ENST00000378932	hsa-miR-197-5p	30831340	30831347	8mer-1a	30831340	30831363	152	-20.98
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000467136	hsa-miR-548aa	30844574	30844580	7mer-m8	30844573	30844597	150	-14.99
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000467136	hsa-miR-548aa	30846005	30846011	7mer-m8	30846004	30846028	152	-11
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000467136	hsa-miR-548aa	30844410	30844416	7mer-m8	30844409	30844433	161	-16.49
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000467136	hsa-miR-548aa	30843513	30843519	7mer-m8	30843512	30843538	164	-14.14
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000467136	hsa-miR-561-3p	30846151	30846158	8mer-1a	30846151	30846172	145	-8.22
CAediting_1351755	chr19_40282625_-	ENSG00000157625.14	ENST00000467136	hsa-miR-641	30835681	30835687	7mer-m8	30835680	30835703	140	-13.09
CAediting_1524209	chrX_134546392_-	ENSG00000157625.14	ENST00000467136	hsa-miR-503-5p	30836611	30836616	6mer	30836610	30836632	157	-26.11

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000157625.14	ENST00000378933	hsa-miR-195-3p	30828061	30828067	7mer-m8	30828060	30828081	142	-5.59
CAediting_393	chr1_1167164_+	ENSG00000157625.14	ENST00000378933	hsa-miR-200b-3p	30829338	30829344	7mer-m8	30829337	30829358	140	-8.28
CAediting_393	chr1_1167164_+	ENSG00000157625.14	ENST00000378933	hsa-miR-200b-3p	30827895	30827901	7mer-m8	30827894	30827915	140	-9.41
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30829407	30829414	8mer-1a	30829407	30829431	140	-10.74
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30829407	30829414	8mer-1a	30829407	30829431	140	-10.74
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30829407	30829414	8mer-1a	30829407	30829431	140	-10.74
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378933	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_117844	chr1_162342605_+	ENSG00000157625.14	ENST00000378933	hsa-miR-556-3p	30828555	30828561	7mer-m8	30828554	30828575	155	-12.16
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378933	hsa-miR-561-3p	30830403	30830409	7mer-m8	30830402	30830421	143	-11.67
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378933	hsa-miR-561-3p	30828538	30828544	7mer-m8	30828537	30828559	150	-10.89
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378933	hsa-miR-561-3p	30831389	30831395	7mer-m8	30831388	30831406	144	-9.52
CAediting_524911	chr7_5495852_-	ENSG00000157625.14	ENST00000378933	hsa-miR-589-3p	30829472	30829478	7mer-m8	30829471	30829495	153	-16.75
CAediting_1160181	chr17_7017644_-	ENSG00000157625.14	ENST00000378930	hsa-miR-195-3p	30828061	30828067	7mer-m8	30828060	30828081	142	-5.59
CAediting_393	chr1_1167164_+	ENSG00000157625.14	ENST00000378930	hsa-miR-200b-3p	30829338	30829344	7mer-m8	30829337	30829358	140	-8.28
CAediting_393	chr1_1167164_+	ENSG00000157625.14	ENST00000378930	hsa-miR-200b-3p	30827895	30827901	7mer-m8	30827894	30827915	140	-9.41
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30829407	30829414	8mer-1a	30829407	30829431	140	-10.74
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30829407	30829414	8mer-1a	30829407	30829431	140	-10.74
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30829407	30829414	8mer-1a	30829407	30829431	140	-10.74
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378930	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_117844	chr1_162342605_+	ENSG00000157625.14	ENST00000378930	hsa-miR-556-3p	30828555	30828561	7mer-m8	30828554	30828575	155	-12.16
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378930	hsa-miR-561-3p	30830403	30830409	7mer-m8	30830402	30830421	143	-11.67
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378930	hsa-miR-561-3p	30828538	30828544	7mer-m8	30828537	30828559	150	-10.89
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378930	hsa-miR-561-3p	30831389	30831395	7mer-m8	30831388	30831406	144	-9.52
CAediting_524911	chr7_5495852_-	ENSG00000157625.14	ENST00000378930	hsa-miR-589-3p	30829472	30829478	7mer-m8	30829471	30829495	153	-16.75
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000378932	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000378932	hsa-miR-548aa	30830630	30830636	7mer-m8	30830629	30830651	147	-7.96
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378932	hsa-miR-561-3p	30830403	30830409	7mer-m8	30830402	30830421	143	-11.67
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000378932	hsa-miR-561-3p	30831389	30831395	7mer-m8	30831388	30831406	144	-9.52
CAediting_1160181	chr17_7017644_-	ENSG00000157625.14	ENST00000467136	hsa-miR-195-3p	30845915	30845921	7mer-m8	30845914	30845935	149	-10.65
CAediting_1306323	chr19_13836462_-	ENSG00000157625.14	ENST00000467136	hsa-miR-27a-3p	30846282	30846289	8mer-1a	30846282	30846302	146	-12.7
CAediting_1229414	chr17_67471546_+	ENSG00000157625.14	ENST00000467136	hsa-miR-548aa	30843238	30843244	7mer-m8	30843237	30843260	152	-13.16
CAediting_1229415	chr17_67471547_+	ENSG00000157625.14	ENST00000467136	hsa-miR-548aa	30843238	30843244	7mer-m8	30843237	30843260	152	-13.16
CAediting_1229413	chr17_67471544_+	ENSG00000157625.14	ENST00000467136	hsa-miR-548aa	30843238	30843244	7mer-m8	30843237	30843260	152	-13.16
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000467136	hsa-miR-561-3p	30844160	30844166	7mer-m8	30844159	30844180	140	-4.52
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000467136	hsa-miR-561-3p	30844133	30844139	7mer-m8	30844132	30844150	155	-8.9
CAediting_228905	chr2_188297554_+	ENSG00000157625.14	ENST00000467136	hsa-miR-561-3p	30843042	30843048	7mer-m8	30843041	30843062	141	-14.44
CAediting_573001	chr7_92204086_-	ENSG00000157625.14	ENST00000467136	hsa-miR-1285-5p	30835419	30835426	8mer-1a	30835419	30835441	151	-15.68
CAediting_573000	chr7_92204081_-	ENSG00000157625.14	ENST00000467136	hsa-miR-1285-5p	30835419	30835426	8mer-1a	30835419	30835441	151	-15.68
CAediting_396018	chr5_1062918_-	ENSG00000157625.14	ENST00000467136	hsa-miR-4635	30834953	30834958	6mer	30834952	30834974	154	-21.78
CAediting_414656	chr5_72878640_+	ENSG00000157625.14	ENST00000467136	hsa-miR-4804-3p	30835722	30835729	8mer-1a	30835722	30835742	140	-10.86
CAediting_980496	chr14_31014685_-	ENSG00000157625.14	ENST00000467136	hsa-miR-624-3p	30835492	30835498	7mer-m8	30835491	30835510	144	-13.94
CAediting_1351755	chr19_40282625_-	ENSG00000157625.14	ENST00000467136	hsa-miR-641	30835880	30835886	7mer-m8	30835879	30835903	143	-10.33

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for TAB3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for TAB3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LIHC	CAediting_1503723	chrX_30836719_-	.	.	.	.	0.0201061431681648	0.312694710003169
STAD	CAediting_1503723	chrX_30836719_-	0.0321494190513134	0.184530450509635	.	.	.	.
ESCA	CAediting_1503723	chrX_30836719_-	0.0317385600418155	0.206827951227275	.	.	.	.
STAD	CAediting_1503731	chrX_30836767_-	0.0152328355646519	0.25235197708404	.	.	.	.

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Relation with cancer stages for TAB3

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
STAD	pathologic_stage	CAediting_1503730	chrX_30836761_-	0.0383040845169589	-0.290983970857406

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Relation with survival for TAB3

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TAB3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TAB3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene