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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SDHAP1 (CAeditome ID:255812)

Gene summary for SDHAP1

check button Gene summary
Gene informationGene symbol

SDHAP1

Gene ID

255812

Gene namesuccinate dehydrogenase complex flavoprotein subunit A pseudogene 1
SynonymsSDHAL1|SDHALP1
Cytomap

3q29

Type of genepseudo
Descriptionsuccinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1succinate dehydrogenase complex, subunit A, flavoprotein-like 1
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for SDHAP1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000185485.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_337544(195960201, -), CAediting_337545(195960244, -), CAediting_337546(195960256, -), CAediting_337547(195960264, -), CAediting_337548(195960270, -), CAediting_337549(195960303, -), CAediting_337550(195960306, -), CAediting_337551(195960308, -), CAediting_337552(195960313, -), CAediting_337553(195960315, -), CAediting_337554(195960316, -), CAediting_337555(195960325, -), CAediting_337556(195960330, -), CAediting_337557(195960339, -), CAediting_337558(195960378, -), CAediting_337559(195960392, -), CAediting_337560(195960419, -), CAediting_337561(195960535, -), CAediting_337562(195960539, -), CAediting_337563(195960540, -), CAediting_337564(195960578, -), CAediting_337565(195960589, -), CAediting_337566(195962754, -), CAediting_337567(195962780, -), CAediting_337568(195962848, -), CAediting_337569(195962863, -), CAediting_337570(195962918, -), CAediting_337571(195962942, -), CAediting_337572(195964284, -), CAediting_337573(195965893, -), CAediting_337574(195965921, -), CAediting_337575(195965962, -), CAediting_337576(195966003, -), CAediting_337577(195966025, -), CAediting_337578(195966093, -), CAediting_337579(195966119, -), CAediting_337580(195966123, -), CAediting_337581(195966149, -), CAediting_337582(195966155, -), CAediting_337583(195966171, -), CAediting_337584(195966247, -), CAediting_337585(195966259, -), CAediting_337586(195966260, -), CAediting_337587(195966278, -), CAediting_337588(195966281, -), CAediting_337589(195966300, -), CAediting_337590(195966321, -), CAediting_337591(195966324, -), CAediting_337592(195966336, -), CAediting_337593(195966354, -), CAediting_337594(195966373, -), CAediting_337595(195966379, -), CAediting_337596(195966381, -), CAediting_337597(195966391, -), CAediting_337598(195966394, -), CAediting_337599(195966395, -), CAediting_337600(195966420, -), CAediting_337601(195966440, -), CAediting_337602(195966446, -), CAediting_337603(195966477, -), CAediting_337604(195971809, -), CAediting_337605(195971854, -), CAediting_337606(195971858, -), CAediting_337607(195972478, -), CAediting_337608(195972485, -), CAediting_337609(195972859, -), CAediting_337610(195972881, -), CAediting_337611(195973026, -), CAediting_337612(195974771, -), CAediting_337613(195974796, -), CAediting_337614(195974802, -), CAediting_337615(195974811, -), CAediting_337616(195978283, -), CAediting_337617(195978388, -), CAediting_337618(195978417, -), CAediting_337619(195978428, -), CAediting_337620(195978459, -), CAediting_337621(195978466, -), CAediting_337622(195979265, -), CAediting_337623(195979273, -), CAediting_337624(195979301, -), CAediting_337625(195979333, -), CAediting_337626(195979396, -), CAediting_337627(195979406, -), CAediting_337628(195979415, -), CAediting_337629(195979420, -), CAediting_337630(195979433, -), CAediting_337631(195979436, -), CAediting_337632(195980200, -), CAediting_337633(195980241, -), CAediting_337634(195980340, -), CAediting_337635(195983755, -), CAediting_337636(195983768, -), CAediting_337637(195983782, -),

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RNA editing positional annotations for SDHAP1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_337544chr3_195960201_-ncRNA_intronic
CAediting_337545chr3_195960244_-ncRNA_intronic
CAediting_337546chr3_195960256_-ncRNA_intronic
CAediting_337547chr3_195960264_-ncRNA_intronic
CAediting_337548chr3_195960270_-ncRNA_intronic
CAediting_337549chr3_195960303_-ncRNA_exonic
CAediting_337550chr3_195960306_-ncRNA_exonic
CAediting_337551chr3_195960308_-ncRNA_exonic
CAediting_337552chr3_195960313_-ncRNA_exonic
CAediting_337553chr3_195960315_-ncRNA_exonic
CAediting_337554chr3_195960316_-ncRNA_exonic
CAediting_337555chr3_195960325_-ncRNA_exonic
CAediting_337556chr3_195960330_-ncRNA_exonic
CAediting_337557chr3_195960339_-ncRNA_exonic
CAediting_337558chr3_195960378_-ncRNA_exonic
CAediting_337559chr3_195960392_-ncRNA_exonic
CAediting_337560chr3_195960419_-ncRNA_exonic
CAediting_337561chr3_195960535_-ncRNA_exonic
CAediting_337562chr3_195960539_-ncRNA_exonic
CAediting_337563chr3_195960540_-ncRNA_exonic
CAediting_337564chr3_195960578_-ncRNA_exonic
CAediting_337565chr3_195960589_-ncRNA_exonic
CAediting_337566chr3_195962754_-ncRNA_intronic
CAediting_337567chr3_195962780_-ncRNA_intronic
CAediting_337568chr3_195962848_-ncRNA_intronic
CAediting_337569chr3_195962863_-ncRNA_intronic
CAediting_337570chr3_195962918_-ncRNA_intronic
CAediting_337571chr3_195962942_-ncRNA_intronic
CAediting_337572chr3_195964284_-ncRNA_intronic
CAediting_337573chr3_195965893_-ncRNA_intronic
CAediting_337574chr3_195965921_-ncRNA_intronic
CAediting_337575chr3_195965962_-ncRNA_intronic
CAediting_337576chr3_195966003_-ncRNA_intronic
CAediting_337577chr3_195966025_-ncRNA_intronic
CAediting_337578chr3_195966093_-ncRNA_intronic
CAediting_337579chr3_195966119_-ncRNA_intronic
CAediting_337580chr3_195966123_-ncRNA_intronic
CAediting_337581chr3_195966149_-ncRNA_intronic
CAediting_337582chr3_195966155_-ncRNA_intronic
CAediting_337583chr3_195966171_-ncRNA_intronic
CAediting_337584chr3_195966247_-ncRNA_intronic
CAediting_337585chr3_195966259_-ncRNA_intronic
CAediting_337586chr3_195966260_-ncRNA_intronic
CAediting_337587chr3_195966278_-ncRNA_intronic
CAediting_337588chr3_195966281_-ncRNA_intronic
CAediting_337589chr3_195966300_-ncRNA_intronic
CAediting_337590chr3_195966321_-ncRNA_intronic
CAediting_337591chr3_195966324_-ncRNA_intronic
CAediting_337592chr3_195966336_-ncRNA_intronic
CAediting_337593chr3_195966354_-ncRNA_intronic
CAediting_337594chr3_195966373_-ncRNA_intronic
CAediting_337595chr3_195966379_-ncRNA_intronic
CAediting_337596chr3_195966381_-ncRNA_intronic
CAediting_337597chr3_195966391_-ncRNA_intronic
CAediting_337598chr3_195966394_-ncRNA_intronic
CAediting_337599chr3_195966395_-ncRNA_intronic
CAediting_337600chr3_195966420_-ncRNA_intronic
CAediting_337601chr3_195966440_-ncRNA_intronic
CAediting_337602chr3_195966446_-ncRNA_intronic
CAediting_337603chr3_195966477_-ncRNA_intronic
CAediting_337604chr3_195971809_-ncRNA_intronic
CAediting_337605chr3_195971854_-ncRNA_intronic
CAediting_337606chr3_195971858_-ncRNA_intronic
CAediting_337607chr3_195972478_-ncRNA_intronic
CAediting_337608chr3_195972485_-ncRNA_intronic
CAediting_337609chr3_195972859_-ncRNA_intronic
CAediting_337610chr3_195972881_-ncRNA_intronic
CAediting_337611chr3_195973026_-ncRNA_intronic
CAediting_337612chr3_195974771_-ncRNA_intronic
CAediting_337613chr3_195974796_-ncRNA_intronic
CAediting_337614chr3_195974802_-ncRNA_intronic
CAediting_337615chr3_195974811_-ncRNA_intronic
CAediting_337616chr3_195978283_-ncRNA_intronic
CAediting_337617chr3_195978388_-ncRNA_intronic
CAediting_337618chr3_195978417_-ncRNA_intronic
CAediting_337619chr3_195978428_-ncRNA_intronic
CAediting_337620chr3_195978459_-ncRNA_intronic
CAediting_337621chr3_195978466_-ncRNA_intronic
CAediting_337622chr3_195979265_-ncRNA_intronic
CAediting_337623chr3_195979273_-ncRNA_intronic
CAediting_337624chr3_195979301_-ncRNA_intronic
CAediting_337625chr3_195979333_-ncRNA_intronic
CAediting_337626chr3_195979396_-ncRNA_intronic
CAediting_337627chr3_195979406_-ncRNA_intronic
CAediting_337628chr3_195979415_-ncRNA_intronic
CAediting_337629chr3_195979420_-ncRNA_intronic
CAediting_337630chr3_195979433_-ncRNA_intronic
CAediting_337631chr3_195979436_-ncRNA_intronic
CAediting_337632chr3_195980200_-ncRNA_intronic
CAediting_337633chr3_195980241_-ncRNA_intronic
CAediting_337634chr3_195980340_-ncRNA_intronic
CAediting_337635chr3_195983755_-ncRNA_intronic
CAediting_337636chr3_195983768_-ncRNA_intronic
CAediting_337637chr3_195983782_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_337544chr3_195960201_-SINEAluAluJb
CAediting_337545chr3_195960244_-SINEAluAluJb
CAediting_337546chr3_195960256_-SINEAluAluJb
CAediting_337547chr3_195960264_-SINEAluAluJb
CAediting_337548chr3_195960270_-SINEAluAluJb
CAediting_337549chr3_195960303_-SINEAluAluJb
CAediting_337550chr3_195960306_-SINEAluAluJb
CAediting_337551chr3_195960308_-SINEAluAluJb
CAediting_337552chr3_195960313_-SINEAluAluJb
CAediting_337553chr3_195960315_-SINEAluAluJb
CAediting_337554chr3_195960316_-SINEAluAluJb
CAediting_337555chr3_195960325_-SINEAluAluJb
CAediting_337556chr3_195960330_-SINEAluAluJb
CAediting_337557chr3_195960339_-SINEAluAluJb
CAediting_337558chr3_195960378_-SINEAluAluJb
CAediting_337559chr3_195960392_-SINEAluAluJb
CAediting_337560chr3_195960419_-SINEAluAluJb
CAediting_337561chr3_195960535_-DNATcMar-MarinerMADE1
CAediting_337562chr3_195960539_-DNATcMar-MarinerMADE1
CAediting_337563chr3_195960540_-DNATcMar-MarinerMADE1
CAediting_337564chr3_195960578_-DNATcMar-MarinerMADE1
CAediting_337565chr3_195960589_-DNATcMar-MarinerMADE1
CAediting_337566chr3_195962754_-SINEAluAluJo
CAediting_337567chr3_195962780_-SINEAluAluJo
CAediting_337568chr3_195962848_-SINEAluAluJo
CAediting_337569chr3_195962863_-SINEAluAluJo
CAediting_337570chr3_195962918_-SINEAluAluJo
CAediting_337571chr3_195962942_-SINEAluAluJo
CAediting_337572chr3_195964284_-SINEAluAluJb
CAediting_337573chr3_195965893_-SINEAluAluJb
CAediting_337574chr3_195965921_-SINEAluAluJb
CAediting_337575chr3_195965962_-SINEAluAluJb
CAediting_337576chr3_195966003_-SINEAluAluJb
CAediting_337577chr3_195966025_-SINEAluAluJb
CAediting_337578chr3_195966093_-SINEAluAluJb
CAediting_337579chr3_195966119_-SINEAluAluJb
CAediting_337580chr3_195966123_-SINEAluAluJb
CAediting_337581chr3_195966149_-SINEAluAluJb
CAediting_337582chr3_195966155_-SINEAluAluJb
CAediting_337583chr3_195966171_-SINEAluAluJb
CAediting_337584chr3_195966247_-SINEAluAluSz
CAediting_337585chr3_195966259_-SINEAluAluSz
CAediting_337586chr3_195966260_-SINEAluAluSz
CAediting_337587chr3_195966278_-SINEAluAluSz
CAediting_337588chr3_195966281_-SINEAluAluSz
CAediting_337589chr3_195966300_-SINEAluAluSz
CAediting_337590chr3_195966321_-SINEAluAluSz
CAediting_337591chr3_195966324_-SINEAluAluSz
CAediting_337592chr3_195966336_-SINEAluAluSz
CAediting_337593chr3_195966354_-SINEAluAluSz
CAediting_337594chr3_195966373_-SINEAluAluSz
CAediting_337595chr3_195966379_-SINEAluAluSz
CAediting_337596chr3_195966381_-SINEAluAluSz
CAediting_337597chr3_195966391_-SINEAluAluSz
CAediting_337598chr3_195966394_-SINEAluAluSz
CAediting_337599chr3_195966395_-SINEAluAluSz
CAediting_337600chr3_195966420_-SINEAluAluSz
CAediting_337601chr3_195966440_-SINEAluAluSz
CAediting_337602chr3_195966446_-SINEAluAluSz
CAediting_337603chr3_195966477_-SINEAluAluSz
CAediting_337604chr3_195971809_-SINEAluAluSz6
CAediting_337605chr3_195971854_-SINEAluAluSz6
CAediting_337606chr3_195971858_-SINEAluAluSz6
CAediting_337607chr3_195972478_-SINEAluAluSx1
CAediting_337608chr3_195972485_-SINEAluAluSx1
CAediting_337609chr3_195972859_-SINEAluAluSz
CAediting_337610chr3_195972881_-SINEAluAluSz
CAediting_337611chr3_195973026_-SINEAluAluSz
CAediting_337612chr3_195974771_-SINEAluAluSx1
CAediting_337613chr3_195974796_-SINEAluAluSx1
CAediting_337614chr3_195974802_-SINEAluAluSx1
CAediting_337615chr3_195974811_-SINEAluAluSx1
CAediting_337616chr3_195978283_-SINEAluAluJb
CAediting_337617chr3_195978388_-SINEAluAluJb
CAediting_337618chr3_195978417_-SINEAluAluJb
CAediting_337619chr3_195978428_-SINEAluAluJb
CAediting_337620chr3_195978459_-SINEAluAluJb
CAediting_337621chr3_195978466_-SINEAluAluJb
CAediting_337622chr3_195979265_-SINEAluAluSx
CAediting_337623chr3_195979273_-SINEAluAluSx
CAediting_337624chr3_195979301_-SINEAluAluSx
CAediting_337625chr3_195979333_-SINEAluAluSx
CAediting_337626chr3_195979396_-SINEAluAluSx
CAediting_337627chr3_195979406_-SINEAluAluSx
CAediting_337628chr3_195979415_-SINEAluAluSx
CAediting_337629chr3_195979420_-SINEAluAluSx
CAediting_337630chr3_195979433_-SINEAluAluSx
CAediting_337631chr3_195979436_-SINEAluAluSx
CAediting_337632chr3_195980200_-SINEAluAluSx
CAediting_337633chr3_195980241_-SINEAluAluSx
CAediting_337634chr3_195980340_-SINEAluAluSx
CAediting_337635chr3_195983755_-SINEAluAluJr4
CAediting_337636chr3_195983768_-SINEAluAluJr4
CAediting_337637chr3_195983782_-SINEAluAluJr4

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RNA A-to-I editing events in the alternative splicing sites for SDHAP1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000185485.13.SDHAP1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000185485.13.SDHAP1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SDHAP1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
ESCA.CAediting_337591.ENSG00000185485.SDHAP1.png
Soverview
PAAD.CAediting_337565.ENSG00000185485.SDHAP1.png
Soverview

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Protein coding region RNA A-to-I editings for SDHAP1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SDHAP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SDHAP1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000427149.4processed_transcriptSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_337549ENST00000427149.4chr3_195960303_--225.40-222.70-242.90
CAediting_337550ENST00000427149.4chr3_195960306_--229.50-222.70-242.90
CAediting_337551ENST00000427149.4chr3_195960308_--225.70-222.70-242.90
CAediting_337552ENST00000427149.4chr3_195960313_--224.90-222.70-242.90
CAediting_337553ENST00000427149.4chr3_195960315_--226.40-222.70-242.90
CAediting_337554ENST00000427149.4chr3_195960316_--223.30-222.70-242.90
CAediting_337555ENST00000427149.4chr3_195960325_--226.10-222.70-242.90
CAediting_337556ENST00000427149.4chr3_195960330_--222.60-222.70-242.90
CAediting_337557ENST00000427149.4chr3_195960339_--225.10-222.70-242.90
CAediting_337558ENST00000427149.4chr3_195960378_--223.60-222.70-242.90
CAediting_337559ENST00000427149.4chr3_195960392_--222.70-222.70-242.90
CAediting_337560ENST00000427149.4chr3_195960419_--224.70-222.70-242.90

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Relation with ADAR for SDHAP1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_337565chr3_195960589_-0.001614650816687720.389270522356741..0.02270350739735480.286735336215823
BRCACAediting_337565chr3_195960589_-1.60651501081409e-090.387673447985718....
CESCCAediting_337565chr3_195960589_-0.0005689793151752430.358141037204989....
LUADCAediting_337565chr3_195960589_-1.63684532703188e-060.509345068699755....
LUSCCAediting_337565chr3_195960589_-1.38975050840514e-060.420832552815479....
THCACAediting_337565chr3_195960589_-0.01190322927517730.257084323496046....
KIRCCAediting_337565chr3_195960589_-0.02081538825908530.17462587041104....

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Relation with cancer stages for SDHAP1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
KIRCpathologic_stageCAediting_337565chr3_195960589_-0.002022597326573380.23182135987101
LUSCpathologic_stageCAediting_337565chr3_195960589_-0.004850310347377920.253453300318191

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Relation with survival for SDHAP1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for SDHAP1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SDHAP1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource