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Editing gene: LINC00957 (CAeditome ID:255031)

Gene summary for LINC00957

Gene summary

Gene information	Gene symbol	LINC00957
	Gene ID	255031
	Gene name	long intergenic non-protein coding RNA 957
	Synonyms	-
	Cytomap	7p13
	Type of gene	ncRNA
	Description	-
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for LINC00957

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000235314.1

RNA A-to-I editing events in Cancer.

CAediting_541321(44042020, +), CAediting_541322(44042035, +), CAediting_541323(44042047, +), CAediting_541324(44042053, +), CAediting_541325(44042054, +), CAediting_541326(44042059, +), CAediting_541327(44042075, +), CAediting_541328(44042076, +), CAediting_541329(44042084, +), CAediting_541330(44042086, +), CAediting_541331(44042097, +), CAediting_541332(44042098, +), CAediting_541333(44042100, +), CAediting_541334(44042102, +), CAediting_541335(44042120, +), CAediting_541336(44042121, +), CAediting_541337(44042129, +), CAediting_541338(44042130, +), CAediting_541339(44042131, +), CAediting_541340(44042136, +), CAediting_541341(44042142, +), CAediting_541342(44042145, +), CAediting_541343(44042146, +), CAediting_541344(44042149, +), CAediting_541345(44042151, +), CAediting_541346(44042154, +), CAediting_541347(44042156, +), CAediting_541348(44042160, +), CAediting_541349(44042168, +), CAediting_541350(44042176, +), CAediting_541351(44042186, +), CAediting_541352(44042192, +), CAediting_541353(44042196, +), CAediting_541354(44042200, +), CAediting_541355(44042203, +), CAediting_541356(44042209, +), CAediting_541357(44042213, +), CAediting_541358(44042216, +), CAediting_541359(44042219, +), CAediting_541360(44042222, +), CAediting_541361(44042227, +), CAediting_541362(44042228, +), CAediting_541363(44042235, +), CAediting_541364(44042239, +), CAediting_541365(44042241, +), CAediting_541366(44042248, +), CAediting_541367(44042273, +), CAediting_541368(44042278, +), CAediting_541369(44042287, +), CAediting_541370(44042295, +), CAediting_541371(44042302, +),

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RNA editing positional annotations for LINC00957 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_541321	chr7_44042020_+	ncRNA_exonic
CAediting_541322	chr7_44042035_+	ncRNA_exonic
CAediting_541323	chr7_44042047_+	ncRNA_exonic
CAediting_541324	chr7_44042053_+	ncRNA_exonic
CAediting_541325	chr7_44042054_+	ncRNA_exonic
CAediting_541326	chr7_44042059_+	ncRNA_exonic
CAediting_541327	chr7_44042075_+	ncRNA_exonic
CAediting_541328	chr7_44042076_+	ncRNA_exonic
CAediting_541329	chr7_44042084_+	ncRNA_exonic
CAediting_541330	chr7_44042086_+	ncRNA_exonic
CAediting_541331	chr7_44042097_+	ncRNA_exonic
CAediting_541332	chr7_44042098_+	ncRNA_exonic
CAediting_541333	chr7_44042100_+	ncRNA_exonic
CAediting_541334	chr7_44042102_+	ncRNA_exonic
CAediting_541335	chr7_44042120_+	ncRNA_exonic
CAediting_541336	chr7_44042121_+	ncRNA_exonic
CAediting_541337	chr7_44042129_+	ncRNA_exonic
CAediting_541338	chr7_44042130_+	ncRNA_exonic
CAediting_541339	chr7_44042131_+	ncRNA_exonic
CAediting_541340	chr7_44042136_+	ncRNA_exonic
CAediting_541341	chr7_44042142_+	ncRNA_exonic
CAediting_541342	chr7_44042145_+	ncRNA_exonic
CAediting_541343	chr7_44042146_+	ncRNA_exonic
CAediting_541344	chr7_44042149_+	ncRNA_exonic
CAediting_541345	chr7_44042151_+	ncRNA_exonic
CAediting_541346	chr7_44042154_+	ncRNA_exonic
CAediting_541347	chr7_44042156_+	ncRNA_exonic
CAediting_541348	chr7_44042160_+	ncRNA_exonic
CAediting_541349	chr7_44042168_+	ncRNA_exonic
CAediting_541350	chr7_44042176_+	ncRNA_exonic
CAediting_541351	chr7_44042186_+	ncRNA_exonic
CAediting_541352	chr7_44042192_+	ncRNA_exonic
CAediting_541353	chr7_44042196_+	ncRNA_exonic
CAediting_541354	chr7_44042200_+	ncRNA_exonic
CAediting_541355	chr7_44042203_+	ncRNA_exonic
CAediting_541356	chr7_44042209_+	ncRNA_exonic
CAediting_541357	chr7_44042213_+	ncRNA_exonic
CAediting_541358	chr7_44042216_+	ncRNA_exonic
CAediting_541359	chr7_44042219_+	ncRNA_exonic
CAediting_541360	chr7_44042222_+	ncRNA_exonic
CAediting_541361	chr7_44042227_+	ncRNA_exonic
CAediting_541362	chr7_44042228_+	ncRNA_exonic
CAediting_541363	chr7_44042235_+	ncRNA_exonic
CAediting_541364	chr7_44042239_+	ncRNA_exonic
CAediting_541365	chr7_44042241_+	ncRNA_exonic
CAediting_541366	chr7_44042248_+	ncRNA_exonic
CAediting_541367	chr7_44042273_+	ncRNA_exonic
CAediting_541368	chr7_44042278_+	ncRNA_exonic
CAediting_541369	chr7_44042287_+	ncRNA_exonic
CAediting_541370	chr7_44042295_+	ncRNA_exonic
CAediting_541371	chr7_44042302_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_541322	chr7_44042035_+	SINE	Alu	AluSc
CAediting_541323	chr7_44042047_+	SINE	Alu	AluSc
CAediting_541324	chr7_44042053_+	SINE	Alu	AluSc
CAediting_541325	chr7_44042054_+	SINE	Alu	AluSc
CAediting_541326	chr7_44042059_+	SINE	Alu	AluSc
CAediting_541327	chr7_44042075_+	SINE	Alu	AluSc
CAediting_541328	chr7_44042076_+	SINE	Alu	AluSc
CAediting_541329	chr7_44042084_+	SINE	Alu	AluSc
CAediting_541330	chr7_44042086_+	SINE	Alu	AluSc
CAediting_541331	chr7_44042097_+	SINE	Alu	AluSc
CAediting_541332	chr7_44042098_+	SINE	Alu	AluSc
CAediting_541333	chr7_44042100_+	SINE	Alu	AluSc
CAediting_541334	chr7_44042102_+	SINE	Alu	AluSc
CAediting_541335	chr7_44042120_+	SINE	Alu	AluSc
CAediting_541336	chr7_44042121_+	SINE	Alu	AluSc
CAediting_541337	chr7_44042129_+	SINE	Alu	AluSc
CAediting_541338	chr7_44042130_+	SINE	Alu	AluSc
CAediting_541339	chr7_44042131_+	SINE	Alu	AluSc
CAediting_541340	chr7_44042136_+	SINE	Alu	AluSc
CAediting_541341	chr7_44042142_+	SINE	Alu	AluSc
CAediting_541342	chr7_44042145_+	SINE	Alu	AluSc
CAediting_541343	chr7_44042146_+	SINE	Alu	AluSc
CAediting_541344	chr7_44042149_+	SINE	Alu	AluSc
CAediting_541345	chr7_44042151_+	SINE	Alu	AluSc
CAediting_541346	chr7_44042154_+	SINE	Alu	AluSc
CAediting_541347	chr7_44042156_+	SINE	Alu	AluSc
CAediting_541348	chr7_44042160_+	SINE	Alu	AluSc
CAediting_541349	chr7_44042168_+	SINE	Alu	AluSc
CAediting_541350	chr7_44042176_+	SINE	Alu	AluSc
CAediting_541351	chr7_44042186_+	SINE	Alu	AluSc
CAediting_541352	chr7_44042192_+	SINE	Alu	AluSc
CAediting_541353	chr7_44042196_+	SINE	Alu	AluSc
CAediting_541354	chr7_44042200_+	SINE	Alu	AluSc
CAediting_541355	chr7_44042203_+	SINE	Alu	AluSc
CAediting_541356	chr7_44042209_+	SINE	Alu	AluSc
CAediting_541357	chr7_44042213_+	SINE	Alu	AluSc
CAediting_541358	chr7_44042216_+	SINE	Alu	AluSc
CAediting_541359	chr7_44042219_+	SINE	Alu	AluSc
CAediting_541360	chr7_44042222_+	SINE	Alu	AluSc
CAediting_541361	chr7_44042227_+	SINE	Alu	AluSc
CAediting_541362	chr7_44042228_+	SINE	Alu	AluSc
CAediting_541363	chr7_44042235_+	SINE	Alu	AluSc
CAediting_541364	chr7_44042239_+	SINE	Alu	AluSc
CAediting_541365	chr7_44042241_+	SINE	Alu	AluSc
CAediting_541366	chr7_44042248_+	SINE	Alu	AluSc
CAediting_541367	chr7_44042273_+	SINE	Alu	AluSc
CAediting_541368	chr7_44042278_+	SINE	Alu	AluSc
CAediting_541369	chr7_44042287_+	SINE	Alu	AluSc
CAediting_541370	chr7_44042295_+	SINE	Alu	AluSc
CAediting_541371	chr7_44042302_+	SINE	Alu	AluSc

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RNA A-to-I editing events in the alternative splicing sites for LINC00957

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000235314.1.LINC00957.

Correlation between RNA A-to-I editing and PSI for ENSG00000235314.1.LINC00957.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC00957

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LINC00957

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LINC00957

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_541322	chr7_44042035_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-7108-3p	44042031	44042037	7mer-m8	44042019	44042038	162	-30.06
CAediting_541324	chr7_44042053_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-513a-5p	44042048	44042054	7mer-m8	44042038	44042055	144	-17.77
CAediting_541324	chr7_44042053_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-638	44042053	44042059	7mer-1a	44042035	44042059	151	-33.99
CAediting_541339	chr7_44042131_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3158-3p	44042129	44042136	8mer-1a	44042116	44042136	150	-20.03
CAediting_541339	chr7_44042131_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-412-3p	44042125	44042131	7mer-m8	44042110	44042132	151	-16.53
CAediting_541339	chr7_44042131_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6754-3p	44042125	44042131	7mer-m8	44042112	44042132	144	-15.76
CAediting_541341	chr7_44042142_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-374b-3p	44042140	44042147	8mer-1a	44042122	44042147	150	-14.59
CAediting_541341	chr7_44042142_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4756-3p	44042136	44042142	7mer-m8	44042120	44042143	149	-15.72
CAediting_541343	chr7_44042146_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-325	44042140	44042147	8mer-1a	44042125	44042147	145	-9.94
CAediting_541345	chr7_44042151_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3680-3p	44042149	44042156	8mer-1a	44042134	44042156	140	-14.34
CAediting_541346	chr7_44042154_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4742-3p	44042148	44042155	8mer-1a	44042133	44042155	142	-9.18
CAediting_541351	chr7_44042186_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-140-3p	44042182	44042188	7mer-m8	44042169	44042189	155	-21.26
CAediting_541353	chr7_44042196_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1207-3p	44042190	44042196	7mer-m8	44042179	44042197	145	-13.53
CAediting_541353	chr7_44042196_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-646	44042192	44042198	7mer-m8	44042180	44042199	148	-21.05
CAediting_541321	chr7_44042020_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3130-5p	44042016	44042022	7mer-m8	44042003	44042023	150	-18.3
CAediting_541321	chr7_44042020_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4482-5p	44042016	44042022	7mer-m8	44042000	44042023	142	-17.36
CAediting_541328	chr7_44042076_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3176	44042070	44042076	7mer-m8	44042057	44042077	143	-17.19
CAediting_541328	chr7_44042076_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3620-3p	44042074	44042080	7mer-m8	44042059	44042081	156	-24.24
CAediting_541328	chr7_44042076_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3922-3p	44042070	44042076	7mer-m8	44042056	44042077	141	-20.4
CAediting_541330	chr7_44042086_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6747-3p	44042081	44042086	6mer	44042067	44042087	140	-24.49
CAediting_541332	chr7_44042098_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-378a-5p	44042094	44042100	7mer-m8	44042080	44042101	153	-23.97
CAediting_541333	chr7_44042100_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-10397-5p	44042094	44042100	7mer-m8	44042080	44042101	158	-23.23
CAediting_541333	chr7_44042100_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-188-5p	44042097	44042103	7mer-m8	44042083	44042104	156	-17.89
CAediting_541333	chr7_44042100_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4780	44042095	44042102	8mer-1a	44042077	44042102	157	-23.87
CAediting_541333	chr7_44042100_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-623	44042096	44042102	7mer-m8	44042081	44042103	140	-18.22
CAediting_541333	chr7_44042100_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6866-3p	44042097	44042103	7mer-m8	44042082	44042104	163	-21.2
CAediting_541336	chr7_44042121_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3190-5p	44042115	44042121	7mer-m8	44042103	44042122	150	-18.87
CAediting_541338	chr7_44042130_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1182	44042129	44042136	8mer-1a	44042114	44042136	143	-15.71
CAediting_541338	chr7_44042130_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1229-3p	44042125	44042131	7mer-m8	44042108	44042132	146	-16.14
CAediting_541338	chr7_44042130_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6511a-3p	44042124	44042131	8mer-1a	44042110	44042131	145	-15.2
CAediting_541338	chr7_44042130_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6511b-3p	44042124	44042131	8mer-1a	44042109	44042131	140	-13.68
CAediting_541340	chr7_44042136_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4524a-3p	44042134	44042140	7mer-m8	44042120	44042141	158	-16.64
CAediting_541340	chr7_44042136_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4524b-3p	44042133	44042139	7mer-m8	44042119	44042140	152	-20.11
CAediting_541340	chr7_44042136_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6823-5p	44042130	44042136	7mer-m8	44042117	44042137	143	-17.07
CAediting_541342	chr7_44042145_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-222-5p	44042140	44042147	8mer-1a	44042129	44042147	144	-11.65
CAediting_541342	chr7_44042145_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-30a-3p	44042142	44042149	8mer-1a	44042125	44042149	154	-10.8
CAediting_541342	chr7_44042145_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-30d-3p	44042142	44042149	8mer-1a	44042124	44042149	151	-10.92
CAediting_541342	chr7_44042145_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-30e-3p	44042142	44042149	8mer-1a	44042125	44042149	154	-12.66
CAediting_541342	chr7_44042145_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-936	44042139	44042146	8mer-1a	44042124	44042146	159	-24.07
CAediting_541347	chr7_44042156_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6844	44042151	44042157	7mer-m8	44042137	44042158	155	-7.49
CAediting_541356	chr7_44042209_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-18a-3p	44042209	44042214	6mer	44042195	44042215	142	-24.7
CAediting_541356	chr7_44042209_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1913	44042208	44042214	7mer-m8	44042196	44042215	148	-25.01
CAediting_541356	chr7_44042209_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6849-3p	44042203	44042209	7mer-m8	44042188	44042210	141	-14.9
CAediting_541358	chr7_44042216_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6752-3p	44042210	44042216	7mer-m8	44042198	44042217	152	-24.77
CAediting_541358	chr7_44042216_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6801-3p	44042211	44042218	8mer-1a	44042199	44042218	148	-24.49
CAediting_541358	chr7_44042216_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6810-3p	44042211	44042218	8mer-1a	44042196	44042218	146	-24.94
CAediting_541363	chr7_44042235_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1913	44042234	44042241	8mer-1a	44042220	44042241	147	-21.46
CAediting_541363	chr7_44042235_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-361-3p	44042231	44042236	6mer	44042211	44042237	149	-27.47
CAediting_541364	chr7_44042239_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1281	44042233	44042239	7mer-m8	44042224	44042240	141	-17.01
CAediting_541365	chr7_44042241_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6747-3p	44042235	44042241	7mer-m8	44042222	44042242	151	-23.23
CAediting_541365	chr7_44042241_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6752-3p	44042236	44042242	7mer-m8	44042222	44042243	152	-25.97
CAediting_541365	chr7_44042241_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6771-3p	44042240	44042246	7mer-m8	44042227	44042247	168	-30.09
CAediting_541365	chr7_44042241_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6801-3p	44042237	44042243	7mer-m8	44042225	44042244	158	-24.58
CAediting_541365	chr7_44042241_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6810-3p	44042237	44042243	7mer-m8	44042221	44042244	165	-29.95
CAediting_541366	chr7_44042248_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6511a-3p	44042248	44042253	6mer	44042233	44042254	140	-26.09
CAediting_541366	chr7_44042248_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6511b-3p	44042248	44042253	6mer	44042232	44042254	140	-28.04
CAediting_541366	chr7_44042248_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6784-3p	44042248	44042253	6mer	44042232	44042254	143	-28.22
CAediting_541366	chr7_44042248_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6862-3p	44042248	44042253	6mer	44042231	44042254	142	-26.63
CAediting_541368	chr7_44042278_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4743-5p	44042275	44042281	7mer-m8	44042261	44042282	145	-22.66
CAediting_541369	chr7_44042287_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1184	44042284	44042291	8mer-1a	44042267	44042291	150	-15.37
CAediting_541369	chr7_44042287_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1301-3p	44042284	44042289	6mer	44042262	44042290	148	-29.3
CAediting_541369	chr7_44042287_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-7156-3p	44042283	44042289	7mer-m8	44042267	44042290	156	-26.98
CAediting_541370	chr7_44042295_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3156-3p	44042291	44042297	7mer-m8	44042278	44042298	141	-16.3
CAediting_541370	chr7_44042295_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6777-3p	44042289	44042295	7mer-m8	44042278	44042296	149	-20.52
CAediting_541337	chr7_44042129_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-23a-5p	44042128	44042134	7mer-m8	44042109	44042135	146	-26.13
CAediting_541337	chr7_44042129_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-23b-5p	44042128	44042134	7mer-m8	44042115	44042135	156	-20.46
CAediting_541355	chr7_44042203_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-125a-5p	44042197	44042203	7mer-m8	44042181	44042204	142	-17.93
CAediting_541355	chr7_44042203_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-125b-5p	44042197	44042203	7mer-m8	44042183	44042204	141	-16.47
CAediting_541355	chr7_44042203_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3943	44042201	44042207	7mer-m8	44042188	44042208	150	-22.11
CAediting_541355	chr7_44042203_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4313	44042200	44042206	7mer-m8	44042188	44042207	146	-21.1
CAediting_541355	chr7_44042203_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4319	44042197	44042203	7mer-m8	44042188	44042204	142	-17.68

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_541324	chr7_44042053_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-10399-5p	44042049	44042055	7mer-m8	44042035	44042056	148	-10
CAediting_541325	chr7_44042054_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-10399-5p	44042049	44042055	7mer-m8	44042035	44042056	148	-10
CAediting_541322	chr7_44042035_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-10a-5p	44042034	44042039	6mer	44042016	44042040	140	-24.55
CAediting_541350	chr7_44042176_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-1227-3p	44042171	44042177	7mer-m8	44042159	44042178	151	-28.47
CAediting_541363	chr7_44042235_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-150-5p	44042230	44042236	7mer-m8	44042216	44042237	140	-14.33
CAediting_541361	chr7_44042227_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-26a-5p	44042221	44042228	8mer-1a	44042207	44042228	152	-13.83
CAediting_541360	chr7_44042222_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-26a-5p	44042221	44042228	8mer-1a	44042207	44042228	152	-13.83
CAediting_541368	chr7_44042278_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3135b	44042274	44042280	7mer-m8	44042264	44042281	155	-28.78
CAediting_541368	chr7_44042278_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3652	44042275	44042281	7mer-m8	44042263	44042282	153	-21.81
CAediting_541368	chr7_44042278_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3929	44042277	44042282	6mer	44042261	44042283	142	-28.45
CAediting_541323	chr7_44042047_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3934-5p	44042045	44042051	7mer-m8	44042030	44042052	147	-21.08
CAediting_541335	chr7_44042120_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4435	44042114	44042121	8mer-1a	44042098	44042121	141	-15.03
CAediting_541361	chr7_44042227_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4465	44042221	44042228	8mer-1a	44042202	44042228	148	-16.7
CAediting_541360	chr7_44042222_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4465	44042221	44042228	8mer-1a	44042202	44042228	148	-16.7
CAediting_541350	chr7_44042176_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4715-3p	44042170	44042176	7mer-m8	44042155	44042177	145	-20
CAediting_541335	chr7_44042120_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4781-3p	44042118	44042124	7mer-m8	44042104	44042125	140	-14.54
CAediting_541336	chr7_44042121_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4781-3p	44042118	44042124	7mer-m8	44042104	44042125	140	-14.54
CAediting_541361	chr7_44042227_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5000-5p	44042225	44042230	6mer	44042209	44042231	146	-18.31
CAediting_541362	chr7_44042228_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5000-5p	44042225	44042230	6mer	44042209	44042231	146	-18.31
CAediting_541367	chr7_44042273_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-504-3p	44042271	44042278	8mer-1a	44042255	44042278	153	-26.37
CAediting_541325	chr7_44042054_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5089-5p	44042053	44042059	7mer-m8	44042038	44042060	148	-13.62
CAediting_541326	chr7_44042059_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5089-5p	44042053	44042059	7mer-m8	44042038	44042060	148	-13.62
CAediting_541358	chr7_44042216_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5571-5p	44042215	44042222	8mer-1a	44042200	44042222	142	-20.29
CAediting_541359	chr7_44042219_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5571-5p	44042215	44042222	8mer-1a	44042200	44042222	142	-20.29
CAediting_541360	chr7_44042222_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5697	44042221	44042227	7mer-1a	44042205	44042227	142	-15.92
CAediting_541368	chr7_44042278_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-5787	44042276	44042281	6mer	44042263	44042282	149	-25
CAediting_541324	chr7_44042053_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6504-3p	44042049	44042055	7mer-m8	44042035	44042056	145	-18.79
CAediting_541325	chr7_44042054_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6504-3p	44042049	44042055	7mer-m8	44042035	44042056	145	-18.79
CAediting_541326	chr7_44042059_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6506-5p	44042054	44042060	7mer-m8	44042039	44042061	144	-14.65
CAediting_541357	chr7_44042213_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6747-3p	44042209	44042216	8mer-1a	44042194	44042216	149	-23.42
CAediting_541363	chr7_44042235_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6778-3p	44042232	44042239	8mer-1a	44042221	44042239	143	-17.28
CAediting_541355	chr7_44042203_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6791-3p	44042200	44042206	7mer-m8	44042187	44042207	154	-17.64
CAediting_541370	chr7_44042295_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6794-3p	44042289	44042295	7mer-m8	44042276	44042296	144	-16.91
CAediting_541355	chr7_44042203_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6829-3p	44042200	44042206	7mer-m8	44042188	44042207	155	-20.58
CAediting_541363	chr7_44042235_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6836-3p	44042233	44042239	7mer-m8	44042220	44042240	145	-17.9
CAediting_541364	chr7_44042239_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6836-3p	44042233	44042239	7mer-m8	44042220	44042240	145	-17.9
CAediting_541327	chr7_44042075_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6878-3p	44042069	44042076	8mer-1a	44042056	44042076	142	-14.81
CAediting_541351	chr7_44042186_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-7151-3p	44042180	44042186	7mer-m8	44042167	44042187	140	-17.86
CAediting_541351	chr7_44042186_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-8052	44042186	44042192	7mer-1a	44042172	44042192	141	-25.19

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4477b	44041025	44041032	8mer-1a	44041011	44041032	148	-13.07
CAediting_688080	chr9_63819626_+	ENSG00000235314.1	ENST00000416824.1	hsa-miR-4477b	44041025	44041032	8mer-1a	44041011	44041032	148	-13.07
CAediting_1054808	chr15_66496985_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4512	44040690	44040695	6mer	44040676	44040696	141	-22.36
CAediting_1229414	chr17_67471546_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-548aa	44041889	44041895	7mer-m8	44041871	44041896	153	-15.91
CAediting_1368054	chr19_46709310_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-320e	44041008	44041014	7mer-m8	44040998	44041015	143	-16.81
CAediting_77128	chr1_85133844_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4423-3p	44041543	44041549	7mer-m8	44041530	44041550	145	-16.18
CAediting_604450	chr7_133034877_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-3654	44041006	44041012	7mer-m8	44040993	44041013	147	-21.29
CAediting_1054808	chr15_66496985_-	ENSG00000235314.1	ENST00000416824.1	hsa-miR-4512	44040690	44040695	6mer	44040676	44040696	141	-22.36
CAediting_1368054	chr19_46709310_-	ENSG00000235314.1	ENST00000416824.1	hsa-miR-320e	44041008	44041014	7mer-m8	44040998	44041015	143	-16.81
CAediting_604450	chr7_133034877_-	ENSG00000235314.1	ENST00000416824.1	hsa-miR-3654	44041006	44041012	7mer-m8	44040993	44041013	147	-21.29
CAediting_468389	chr6_31355314_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6891-5p	44041024	44041030	7mer-1a	44041012	44041030	145	-25.48
CAediting_1524209	chrX_134546392_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-503-5p	44040930	44040936	7mer-m8	44040915	44040937	152	-25.57
CAediting_468389	chr6_31355314_-	ENSG00000235314.1	ENST00000416824.1	hsa-miR-6891-5p	44041024	44041030	7mer-1a	44041012	44041030	145	-25.48
CAediting_1524209	chrX_134546392_-	ENSG00000235314.1	ENST00000416824.1	hsa-miR-503-5p	44040930	44040936	7mer-m8	44040915	44040937	152	-25.57

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_77128	chr1_85133844_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4423-3p	44040112	44040118	7mer-m8	44040099	44040119	140	-11.03
CAediting_688080	chr9_63819626_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4477b	44040983	44040989	7mer-m8	44040968	44040990	144	-9.46
CAediting_688081	chr9_63819627_+	ENSG00000235314.1	ENST00000441052.1	hsa-miR-4477b	44040983	44040989	7mer-m8	44040968	44040990	144	-9.46
CAediting_1524209	chrX_134546392_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-503-5p	44039904	44039910	7mer-m8	44039698	44039911	145	-21.65
CAediting_1399425	chr20_1392958_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6869-5p	44042194	44042200	7mer-m8	44042177	44042201	153	-22.99
CAediting_468389	chr6_31355314_-	ENSG00000235314.1	ENST00000441052.1	hsa-miR-6891-5p	44039612	44039618	7mer-m8	44039599	44039619	152	-26.08
CAediting_688080	chr9_63819626_+	ENSG00000235314.1	ENST00000416824.1	hsa-miR-4477b	44040983	44040989	7mer-m8	44040968	44040990	144	-9.46
CAediting_1524209	chrX_134546392_-	ENSG00000235314.1	ENST00000416824.1	hsa-miR-503-5p	44039904	44039910	7mer-m8	44039282	44039911	145	-21.65

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for LINC00957

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000441052.1	lincRNA

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_541321	ENST00000441052.1	chr7_44042020_+	-1283.40	-1283.50	-1306.70
CAediting_541322	ENST00000441052.1	chr7_44042035_+	-1282.80	-1283.50	-1306.70
CAediting_541323	ENST00000441052.1	chr7_44042047_+	-1287.30	-1283.50	-1306.70
CAediting_541324	ENST00000441052.1	chr7_44042053_+	-1283.60	-1283.50	-1306.70
CAediting_541325	ENST00000441052.1	chr7_44042054_+	-1283.50	-1283.50	-1306.70
CAediting_541326	ENST00000441052.1	chr7_44042059_+	-1282.80	-1283.50	-1306.70
CAediting_541327	ENST00000441052.1	chr7_44042075_+	-1286.90	-1283.50	-1306.70
CAediting_541328	ENST00000441052.1	chr7_44042076_+	-1283.10	-1283.50	-1306.70
CAediting_541329	ENST00000441052.1	chr7_44042084_+	-1289.70	-1283.50	-1306.70
CAediting_541330	ENST00000441052.1	chr7_44042086_+	-1282.90	-1283.50	-1306.70
CAediting_541331	ENST00000441052.1	chr7_44042097_+	-1282.80	-1283.50	-1306.70
CAediting_541332	ENST00000441052.1	chr7_44042098_+	-1290.10	-1283.50	-1306.70
CAediting_541333	ENST00000441052.1	chr7_44042100_+	-1282.60	-1283.50	-1306.70
CAediting_541334	ENST00000441052.1	chr7_44042102_+	-1283.50	-1283.50	-1306.70
CAediting_541335	ENST00000441052.1	chr7_44042120_+	-1283.20	-1283.50	-1306.70
CAediting_541336	ENST00000441052.1	chr7_44042121_+	-1283.50	-1283.50	-1306.70
CAediting_541337	ENST00000441052.1	chr7_44042129_+	-1283.00	-1283.50	-1306.70
CAediting_541338	ENST00000441052.1	chr7_44042130_+	-1283.60	-1283.50	-1306.70
CAediting_541339	ENST00000441052.1	chr7_44042131_+	-1283.50	-1283.50	-1306.70
CAediting_541340	ENST00000441052.1	chr7_44042136_+	-1282.50	-1283.50	-1306.70
CAediting_541341	ENST00000441052.1	chr7_44042142_+	-1283.50	-1283.50	-1306.70
CAediting_541342	ENST00000441052.1	chr7_44042145_+	-1283.60	-1283.50	-1306.70
CAediting_541343	ENST00000441052.1	chr7_44042146_+	-1283.60	-1283.50	-1306.70
CAediting_541344	ENST00000441052.1	chr7_44042149_+	-1283.50	-1283.50	-1306.70
CAediting_541345	ENST00000441052.1	chr7_44042151_+	-1283.50	-1283.50	-1306.70
CAediting_541346	ENST00000441052.1	chr7_44042154_+	-1283.60	-1283.50	-1306.70
CAediting_541347	ENST00000441052.1	chr7_44042156_+	-1283.60	-1283.50	-1306.70
CAediting_541348	ENST00000441052.1	chr7_44042160_+	-1285.20	-1283.50	-1306.70
CAediting_541349	ENST00000441052.1	chr7_44042168_+	-1283.10	-1283.50	-1306.70
CAediting_541350	ENST00000441052.1	chr7_44042176_+	-1285.40	-1283.50	-1306.70
CAediting_541351	ENST00000441052.1	chr7_44042186_+	-1289.00	-1283.50	-1306.70
CAediting_541352	ENST00000441052.1	chr7_44042192_+	-1282.80	-1283.50	-1306.70
CAediting_541353	ENST00000441052.1	chr7_44042196_+	-1283.50	-1283.50	-1306.70
CAediting_541354	ENST00000441052.1	chr7_44042200_+	-1287.50	-1283.50	-1306.70
CAediting_541355	ENST00000441052.1	chr7_44042203_+	-1282.60	-1283.50	-1306.70
CAediting_541356	ENST00000441052.1	chr7_44042209_+	-1282.60	-1283.50	-1306.70
CAediting_541357	ENST00000441052.1	chr7_44042213_+	-1282.80	-1283.50	-1306.70
CAediting_541358	ENST00000441052.1	chr7_44042216_+	-1282.60	-1283.50	-1306.70
CAediting_541359	ENST00000441052.1	chr7_44042219_+	-1286.10	-1283.50	-1306.70
CAediting_541360	ENST00000441052.1	chr7_44042222_+	-1282.50	-1283.50	-1306.70
CAediting_541361	ENST00000441052.1	chr7_44042227_+	-1283.00	-1283.50	-1306.70
CAediting_541362	ENST00000441052.1	chr7_44042228_+	-1283.50	-1283.50	-1306.70
CAediting_541363	ENST00000441052.1	chr7_44042235_+	-1282.70	-1283.50	-1306.70
CAediting_541364	ENST00000441052.1	chr7_44042239_+	-1282.80	-1283.50	-1306.70
CAediting_541365	ENST00000441052.1	chr7_44042241_+	-1282.60	-1283.50	-1306.70
CAediting_541366	ENST00000441052.1	chr7_44042248_+	-1283.50	-1283.50	-1306.70
CAediting_541367	ENST00000441052.1	chr7_44042273_+	-1283.10	-1283.50	-1306.70
CAediting_541368	ENST00000441052.1	chr7_44042278_+	-1283.50	-1283.50	-1306.70
CAediting_541369	ENST00000441052.1	chr7_44042287_+	-1285.20	-1283.50	-1306.70
CAediting_541370	ENST00000441052.1	chr7_44042295_+	-1284.90	-1283.50	-1306.70
CAediting_541371	ENST00000441052.1	chr7_44042302_+	-1283.80	-1283.50	-1306.70

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Relation with ADAR for LINC00957

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_541323	chr7_44042047_+	3.64772937240846e-05	0.446903555921203	.	.	.	.
BRCA	CAediting_541323	chr7_44042047_+	6.93306613620734e-20	0.408068668555574	.	.	.	.
LUAD	CAediting_541323	chr7_44042047_+	0.000500511970701601	0.345141474144614	.	.	.	.
THCA	CAediting_541323	chr7_44042047_+	0.00381129453760082	0.265524165286301	.	.	0.0232787682077081	0.209667217105508
KIRC	CAediting_541323	chr7_44042047_+	0.00209593548454214	0.184086654353395	.	.	.	.
OV	CAediting_541323	chr7_44042047_+	0.00306870358529244	0.303833843213796	.	.	.	.
PCPG	CAediting_541323	chr7_44042047_+	0.000211152320800028	0.347766956115269	.	.	.	.
SKCM	CAediting_541323	chr7_44042047_+	0.0219970445105582	0.179322769832329	.	.	.	.
BRCA	CAediting_541324	chr7_44042053_+	0.00705589525487674	0.27471562771025	.	.	.	.
BRCA	CAediting_541341	chr7_44042142_+	.	.	0.00461819864251756	0.313591277698532	.	.
BRCA	CAediting_541351	chr7_44042186_+	6.01637688919562e-08	0.280405671790786	.	.	.	.
GBM	CAediting_541351	chr7_44042186_+	0.00873926037068767	0.248902182069481	.	.	.	.
THCA	CAediting_541351	chr7_44042186_+	.	.	.	.	0.0247678323472034	0.240621964354796
KIRC	CAediting_541351	chr7_44042186_+	3.42663461268614e-05	0.250211615739394	.	.	0.00196891931199426	0.188236970041412
KIRP	CAediting_541351	chr7_44042186_+	.	.	0.0217026029318287	0.263020124094286	.	.
PCPG	CAediting_541351	chr7_44042186_+	0.000982631815628468	0.303342130882506	.	.	.	.
BRCA	CAediting_541353	chr7_44042196_+	0.0408775635907108	0.157011034435889	.	.	.	.

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Relation with cancer stages for LINC00957

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_541323	chr7_44042047_+	0.0194289037720717	0.110392942418747
KIRC	pathologic_stage	CAediting_541323	chr7_44042047_+	0.000470135968772007	0.209499451733292
KIRC	pathologic_stage	CAediting_541351	chr7_44042186_+	0.0121120927755033	0.153350093063113
KIRP	clinical_stage	CAediting_541323	chr7_44042047_+	0.00301777263230865	0.35198354682967
KIRP	pathologic_stage	CAediting_541323	chr7_44042047_+	0.00922507199823925	0.268631915341422

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Relation with survival for LINC00957

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for LINC00957

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LINC00957

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene